data_3O7R # _model_server_result.job_id YgjGo5MGhQXoou5f35CCiQ _model_server_result.datetime_utc '2024-12-02 18:29:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":179}' # _entry.id 3O7R # _exptl.entry_id 3O7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 101.07 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'RUTHENIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O7R _cell.length_a 181.703 _cell.length_b 181.703 _cell.length_c 181.703 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 A ASP 38 1_555 D CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc2 A OE1 GLU 45 A GLU 45 1_555 D CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc3 A OE1 GLU 60 A GLU 60 1_555 C CD CD . A CD 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc4 A OD1 ASP 80 A ASP 80 1_555 B CD CD . A CD 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc5 A NE2 HIS 114 A HIS 114 1_555 E RU RU . A RU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc6 A OE2 GLU 130 A GLU 130 1_555 E RU RU . A RU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.736 ? metalc ? metalc7 B CD CD . A CD 175 1_555 O O HOH . A HOH 225 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc8 D CD CD . A CD 177 1_555 O O HOH . A HOH 346 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc9 D CD CD . A CD 177 1_555 O O HOH . A HOH 367 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc10 E RU RU . A RU 178 1_555 O O HOH . A HOH 370 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? # _chem_comp.formula 'Ru 3' _chem_comp.formula_weight 101.07 _chem_comp.id RU _chem_comp.mon_nstd_flag . _chem_comp.name 'RUTHENIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O7R _atom_sites.fract_transf_matrix[1][1] 0.005503 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005503 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 175 175 CD CD . C 2 CD A 1 176 176 CD CD . D 2 CD A 1 177 177 CD CD . E 3 RU A 1 178 178 RU RU . F 3 RU A 1 179 179 RU RU . G 4 SO4 A 1 180 180 SO4 SO4 . H 4 SO4 A 1 181 181 SO4 SO4 . I 5 EDO A 1 182 182 EDO EDO . J 5 EDO A 1 183 183 EDO EDO . K 5 EDO A 1 184 184 EDO EDO . L 5 EDO A 1 186 186 EDO EDO . M 5 EDO A 1 187 187 EDO EDO . N 5 EDO A 1 188 188 EDO EDO . O 6 HOH A 1 189 189 HOH HOH . O 6 HOH A 2 190 190 HOH HOH . O 6 HOH A 3 191 191 HOH HOH . O 6 HOH A 4 192 192 HOH HOH . O 6 HOH A 5 193 193 HOH HOH . O 6 HOH A 6 194 194 HOH HOH . O 6 HOH A 7 195 195 HOH HOH . O 6 HOH A 8 196 196 HOH HOH . O 6 HOH A 9 197 197 HOH HOH . O 6 HOH A 10 198 198 HOH HOH . O 6 HOH A 11 199 199 HOH HOH . O 6 HOH A 12 200 200 HOH HOH . O 6 HOH A 13 201 201 HOH HOH . O 6 HOH A 14 202 202 HOH HOH . O 6 HOH A 15 203 203 HOH HOH . O 6 HOH A 16 204 204 HOH HOH . O 6 HOH A 17 205 205 HOH HOH . O 6 HOH A 18 206 206 HOH HOH . O 6 HOH A 19 207 207 HOH HOH . O 6 HOH A 20 208 208 HOH HOH . O 6 HOH A 21 209 209 HOH HOH . O 6 HOH A 22 210 210 HOH HOH . O 6 HOH A 23 211 211 HOH HOH . O 6 HOH A 24 212 212 HOH HOH . O 6 HOH A 25 213 213 HOH HOH . O 6 HOH A 26 214 214 HOH HOH . O 6 HOH A 27 215 215 HOH HOH . O 6 HOH A 28 216 216 HOH HOH . O 6 HOH A 29 217 217 HOH HOH . O 6 HOH A 30 218 218 HOH HOH . O 6 HOH A 31 219 219 HOH HOH . O 6 HOH A 32 220 220 HOH HOH . O 6 HOH A 33 221 221 HOH HOH . O 6 HOH A 34 222 222 HOH HOH . O 6 HOH A 35 223 223 HOH HOH . O 6 HOH A 36 224 224 HOH HOH . O 6 HOH A 37 225 225 HOH HOH . O 6 HOH A 38 226 226 HOH HOH . O 6 HOH A 39 227 227 HOH HOH . O 6 HOH A 40 228 228 HOH HOH . O 6 HOH A 41 229 229 HOH HOH . O 6 HOH A 42 230 230 HOH HOH . O 6 HOH A 43 231 231 HOH HOH . O 6 HOH A 44 232 232 HOH HOH . O 6 HOH A 45 233 233 HOH HOH . O 6 HOH A 46 234 234 HOH HOH . O 6 HOH A 47 235 235 HOH HOH . O 6 HOH A 48 236 236 HOH HOH . O 6 HOH A 49 237 237 HOH HOH . O 6 HOH A 50 238 238 HOH HOH . O 6 HOH A 51 239 239 HOH HOH . O 6 HOH A 52 240 240 HOH HOH . O 6 HOH A 53 241 241 HOH HOH . O 6 HOH A 54 242 242 HOH HOH . O 6 HOH A 55 243 243 HOH HOH . O 6 HOH A 56 244 244 HOH HOH . O 6 HOH A 57 245 245 HOH HOH . O 6 HOH A 58 246 246 HOH HOH . O 6 HOH A 59 247 247 HOH HOH . O 6 HOH A 60 248 248 HOH HOH . O 6 HOH A 61 249 249 HOH HOH . O 6 HOH A 62 250 250 HOH HOH . O 6 HOH A 63 251 251 HOH HOH . O 6 HOH A 64 252 252 HOH HOH . O 6 HOH A 65 253 253 HOH HOH . O 6 HOH A 66 254 254 HOH HOH . O 6 HOH A 67 255 255 HOH HOH . O 6 HOH A 68 256 256 HOH HOH . O 6 HOH A 69 257 257 HOH HOH . O 6 HOH A 70 258 258 HOH HOH . O 6 HOH A 71 259 259 HOH HOH . O 6 HOH A 72 260 260 HOH HOH . O 6 HOH A 73 261 261 HOH HOH . O 6 HOH A 74 262 262 HOH HOH . O 6 HOH A 75 263 263 HOH HOH . O 6 HOH A 76 264 264 HOH HOH . O 6 HOH A 77 265 265 HOH HOH . O 6 HOH A 78 266 266 HOH HOH . O 6 HOH A 79 267 267 HOH HOH . O 6 HOH A 80 268 268 HOH HOH . O 6 HOH A 81 269 269 HOH HOH . O 6 HOH A 82 270 270 HOH HOH . O 6 HOH A 83 271 271 HOH HOH . O 6 HOH A 84 272 272 HOH HOH . O 6 HOH A 85 273 273 HOH HOH . O 6 HOH A 86 274 274 HOH HOH . O 6 HOH A 87 275 275 HOH HOH . O 6 HOH A 88 276 276 HOH HOH . O 6 HOH A 89 277 277 HOH HOH . O 6 HOH A 90 278 278 HOH HOH . O 6 HOH A 91 279 279 HOH HOH . O 6 HOH A 92 280 280 HOH HOH . O 6 HOH A 93 281 281 HOH HOH . O 6 HOH A 94 282 282 HOH HOH . O 6 HOH A 95 283 283 HOH HOH . O 6 HOH A 96 284 284 HOH HOH . O 6 HOH A 97 285 285 HOH HOH . O 6 HOH A 98 286 286 HOH HOH . O 6 HOH A 99 287 287 HOH HOH . O 6 HOH A 100 288 288 HOH HOH . O 6 HOH A 101 289 289 HOH HOH . O 6 HOH A 102 290 290 HOH HOH . O 6 HOH A 103 291 291 HOH HOH . O 6 HOH A 104 292 292 HOH HOH . O 6 HOH A 105 293 293 HOH HOH . O 6 HOH A 106 294 294 HOH HOH . O 6 HOH A 107 295 295 HOH HOH . O 6 HOH A 108 296 296 HOH HOH . O 6 HOH A 109 297 297 HOH HOH . O 6 HOH A 110 298 298 HOH HOH . O 6 HOH A 111 299 299 HOH HOH . O 6 HOH A 112 300 300 HOH HOH . O 6 HOH A 113 301 301 HOH HOH . O 6 HOH A 114 302 302 HOH HOH . O 6 HOH A 115 303 303 HOH HOH . O 6 HOH A 116 304 304 HOH HOH . O 6 HOH A 117 305 305 HOH HOH . O 6 HOH A 118 306 306 HOH HOH . O 6 HOH A 119 307 307 HOH HOH . O 6 HOH A 120 308 308 HOH HOH . O 6 HOH A 121 309 309 HOH HOH . O 6 HOH A 122 310 310 HOH HOH . O 6 HOH A 123 311 311 HOH HOH . O 6 HOH A 124 312 312 HOH HOH . O 6 HOH A 125 313 313 HOH HOH . O 6 HOH A 126 314 314 HOH HOH . O 6 HOH A 127 315 315 HOH HOH . O 6 HOH A 128 316 316 HOH HOH . O 6 HOH A 129 317 317 HOH HOH . O 6 HOH A 130 318 318 HOH HOH . O 6 HOH A 131 319 319 HOH HOH . O 6 HOH A 132 320 320 HOH HOH . O 6 HOH A 133 321 321 HOH HOH . O 6 HOH A 134 322 322 HOH HOH . O 6 HOH A 135 323 323 HOH HOH . O 6 HOH A 136 324 324 HOH HOH . O 6 HOH A 137 325 325 HOH HOH . O 6 HOH A 138 326 326 HOH HOH . O 6 HOH A 139 327 327 HOH HOH . O 6 HOH A 140 328 328 HOH HOH . O 6 HOH A 141 329 329 HOH HOH . O 6 HOH A 142 330 330 HOH HOH . O 6 HOH A 143 331 331 HOH HOH . O 6 HOH A 144 332 332 HOH HOH . O 6 HOH A 145 333 333 HOH HOH . O 6 HOH A 146 334 334 HOH HOH . O 6 HOH A 147 335 335 HOH HOH . O 6 HOH A 148 336 336 HOH HOH . O 6 HOH A 149 337 337 HOH HOH . O 6 HOH A 150 338 338 HOH HOH . O 6 HOH A 151 339 339 HOH HOH . O 6 HOH A 152 340 340 HOH HOH . O 6 HOH A 153 341 341 HOH HOH . O 6 HOH A 154 342 342 HOH HOH . O 6 HOH A 155 343 343 HOH HOH . O 6 HOH A 156 344 344 HOH HOH . O 6 HOH A 157 345 345 HOH HOH . O 6 HOH A 158 346 346 HOH HOH . O 6 HOH A 159 347 347 HOH HOH . O 6 HOH A 160 348 348 HOH HOH . O 6 HOH A 161 349 349 HOH HOH . O 6 HOH A 162 350 350 HOH HOH . O 6 HOH A 163 351 351 HOH HOH . O 6 HOH A 164 352 352 HOH HOH . O 6 HOH A 165 353 353 HOH HOH . O 6 HOH A 166 354 354 HOH HOH . O 6 HOH A 167 355 355 HOH HOH . O 6 HOH A 168 356 356 HOH HOH . O 6 HOH A 169 357 357 HOH HOH . O 6 HOH A 170 358 358 HOH HOH . O 6 HOH A 171 359 359 HOH HOH . O 6 HOH A 172 360 360 HOH HOH . O 6 HOH A 173 361 361 HOH HOH . O 6 HOH A 174 362 362 HOH HOH . O 6 HOH A 175 363 363 HOH HOH . O 6 HOH A 176 364 364 HOH HOH . O 6 HOH A 177 365 365 HOH HOH . O 6 HOH A 178 366 366 HOH HOH . O 6 HOH A 179 367 367 HOH HOH . O 6 HOH A 180 368 368 HOH HOH . O 6 HOH A 181 369 369 HOH HOH . O 6 HOH A 182 370 370 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol RU _atom_site.label_atom_id RU _atom_site.label_comp_id RU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 3.549 _atom_site.Cartn_y 4.526 _atom_site.Cartn_z 36.765 _atom_site.occupancy 0.3 _atom_site.B_iso_or_equiv 55.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id RU _atom_site.auth_comp_id RU _atom_site.auth_seq_id 179 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #