data_3O7S # _model_server_result.job_id gT0PbQIv2gPK_q978ScJww _model_server_result.datetime_utc '2024-12-02 16:57:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o7s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":175}' # _entry.id 3O7S # _exptl.entry_id 3O7S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O7S _cell.length_a 181.443 _cell.length_b 181.443 _cell.length_c 181.443 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O7S _symmetry.cell_setting ? _symmetry.Int_Tables_number 209 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'F 4 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 24-meric _pdbx_struct_assembly.oligomeric_count 24 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 5 'crystal symmetry operation' 5_555 z,x,y 0 0 1 1 0 0 0 1 0 0 0 0 6 'crystal symmetry operation' 6_555 z,-x,-y 0 0 1 -1 0 0 0 -1 0 0 0 0 7 'crystal symmetry operation' 7_555 -z,-x,y 0 0 -1 -1 0 0 0 1 0 0 0 0 8 'crystal symmetry operation' 8_555 -z,x,-y 0 0 -1 1 0 0 0 -1 0 0 0 0 9 'crystal symmetry operation' 9_555 y,z,x 0 1 0 0 0 1 1 0 0 0 0 0 10 'crystal symmetry operation' 10_555 -y,z,-x 0 -1 0 0 0 1 -1 0 0 0 0 0 11 'crystal symmetry operation' 11_555 y,-z,-x 0 1 0 0 0 -1 -1 0 0 0 0 0 12 'crystal symmetry operation' 12_555 -y,-z,x 0 -1 0 0 0 -1 1 0 0 0 0 0 13 'crystal symmetry operation' 13_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 14 'crystal symmetry operation' 14_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 15 'crystal symmetry operation' 15_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 16 'crystal symmetry operation' 16_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 17 'crystal symmetry operation' 17_555 x,z,-y 1 0 0 0 0 1 0 -1 0 0 0 0 18 'crystal symmetry operation' 18_555 -x,z,y -1 0 0 0 0 1 0 1 0 0 0 0 19 'crystal symmetry operation' 19_555 -x,-z,-y -1 0 0 0 0 -1 0 -1 0 0 0 0 20 'crystal symmetry operation' 20_555 x,-z,y 1 0 0 0 0 -1 0 1 0 0 0 0 21 'crystal symmetry operation' 21_555 z,y,-x 0 0 1 0 1 0 -1 0 0 0 0 0 22 'crystal symmetry operation' 22_555 z,-y,x 0 0 1 0 -1 0 1 0 0 0 0 0 23 'crystal symmetry operation' 23_555 -z,y,x 0 0 -1 0 1 0 1 0 0 0 0 0 24 'crystal symmetry operation' 24_555 -z,-y,-x 0 0 -1 0 -1 0 -1 0 0 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 38 A ASP 38 1_555 D CD CD . A CD 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc2 A SG CYS 48 A CYS 48 1_555 G RU RU . A RU 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.018 ? metalc ? metalc3 A NE2 HIS 49 A HIS 49 1_555 C RU RU . A RU 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc4 A OE2 GLU 53 A GLU 53 1_555 C RU RU . A RU 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc5 A OE2 GLU 60 A GLU 60 1_555 H CD CD . A CD 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc6 A OD2 ASP 80 A ASP 80 1_555 B CD CD . A CD 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc7 A OD1 ASP 80 A ASP 80 1_555 B CD CD . A CD 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? metalc ? metalc8 A NE2 HIS 114 A HIS 114 1_555 E RU RU . A RU 178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc9 A NE2 HIS 173 A HIS 173 1_555 C RU RU . A RU 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc10 D CD CD . A CD 177 1_555 O O HOH . A HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc11 G RU RU . A RU 180 1_555 O O HOH . A HOH 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.791 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O7S _atom_sites.fract_transf_matrix[1][1] 0.005511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005511 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005511 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CD A 1 175 1 CD CD . C 3 RU A 1 176 2 RU RU . D 2 CD A 1 177 3 CD CD . E 3 RU A 1 178 4 RU RU . F 4 MML A 1 179 7 MML PCY . G 3 RU A 1 180 5 RU RU . H 2 CD A 1 181 6 CD CD . I 5 SO4 A 1 182 1 SO4 SO4 . J 6 EDO A 1 183 1 EDO EDO . K 6 EDO A 1 184 2 EDO EDO . L 6 EDO A 1 185 3 EDO EDO . M 6 EDO A 1 186 4 EDO EDO . N 6 EDO A 1 187 5 EDO EDO . O 7 HOH A 1 188 1 HOH HOH . O 7 HOH A 2 189 2 HOH HOH . O 7 HOH A 3 190 3 HOH HOH . O 7 HOH A 4 191 4 HOH HOH . O 7 HOH A 5 192 5 HOH HOH . O 7 HOH A 6 193 6 HOH HOH . O 7 HOH A 7 194 7 HOH HOH . O 7 HOH A 8 195 8 HOH HOH . O 7 HOH A 9 196 9 HOH HOH . O 7 HOH A 10 197 10 HOH HOH . O 7 HOH A 11 198 11 HOH HOH . O 7 HOH A 12 199 12 HOH HOH . O 7 HOH A 13 200 13 HOH HOH . O 7 HOH A 14 201 14 HOH HOH . O 7 HOH A 15 202 15 HOH HOH . O 7 HOH A 16 203 16 HOH HOH . O 7 HOH A 17 204 17 HOH HOH . O 7 HOH A 18 205 18 HOH HOH . O 7 HOH A 19 206 19 HOH HOH . O 7 HOH A 20 207 20 HOH HOH . O 7 HOH A 21 208 21 HOH HOH . O 7 HOH A 22 209 22 HOH HOH . O 7 HOH A 23 210 23 HOH HOH . O 7 HOH A 24 211 24 HOH HOH . O 7 HOH A 25 212 25 HOH HOH . O 7 HOH A 26 213 26 HOH HOH . O 7 HOH A 27 214 27 HOH HOH . O 7 HOH A 28 215 28 HOH HOH . O 7 HOH A 29 216 29 HOH HOH . O 7 HOH A 30 217 30 HOH HOH . O 7 HOH A 31 218 31 HOH HOH . O 7 HOH A 32 219 32 HOH HOH . O 7 HOH A 33 220 33 HOH HOH . O 7 HOH A 34 221 34 HOH HOH . O 7 HOH A 35 222 35 HOH HOH . O 7 HOH A 36 223 36 HOH HOH . O 7 HOH A 37 224 37 HOH HOH . O 7 HOH A 38 225 38 HOH HOH . O 7 HOH A 39 226 39 HOH HOH . O 7 HOH A 40 227 40 HOH HOH . O 7 HOH A 41 228 41 HOH HOH . O 7 HOH A 42 229 42 HOH HOH . O 7 HOH A 43 230 43 HOH HOH . O 7 HOH A 44 231 44 HOH HOH . O 7 HOH A 45 232 45 HOH HOH . O 7 HOH A 46 233 46 HOH HOH . O 7 HOH A 47 234 47 HOH HOH . O 7 HOH A 48 235 48 HOH HOH . O 7 HOH A 49 236 49 HOH HOH . O 7 HOH A 50 237 50 HOH HOH . O 7 HOH A 51 238 51 HOH HOH . O 7 HOH A 52 239 52 HOH HOH . O 7 HOH A 53 240 53 HOH HOH . O 7 HOH A 54 241 54 HOH HOH . O 7 HOH A 55 242 55 HOH HOH . O 7 HOH A 56 243 56 HOH HOH . O 7 HOH A 57 244 57 HOH HOH . O 7 HOH A 58 245 58 HOH HOH . O 7 HOH A 59 246 59 HOH HOH . O 7 HOH A 60 247 60 HOH HOH . O 7 HOH A 61 248 61 HOH HOH . O 7 HOH A 62 249 62 HOH HOH . O 7 HOH A 63 250 63 HOH HOH . O 7 HOH A 64 251 64 HOH HOH . O 7 HOH A 65 252 65 HOH HOH . O 7 HOH A 66 253 66 HOH HOH . O 7 HOH A 67 254 67 HOH HOH . O 7 HOH A 68 255 68 HOH HOH . O 7 HOH A 69 256 69 HOH HOH . O 7 HOH A 70 257 70 HOH HOH . O 7 HOH A 71 258 71 HOH HOH . O 7 HOH A 72 259 72 HOH HOH . O 7 HOH A 73 260 73 HOH HOH . O 7 HOH A 74 261 74 HOH HOH . O 7 HOH A 75 262 75 HOH HOH . O 7 HOH A 76 263 76 HOH HOH . O 7 HOH A 77 264 77 HOH HOH . O 7 HOH A 78 265 78 HOH HOH . O 7 HOH A 79 266 79 HOH HOH . O 7 HOH A 80 267 80 HOH HOH . O 7 HOH A 81 268 81 HOH HOH . O 7 HOH A 82 269 82 HOH HOH . O 7 HOH A 83 270 83 HOH HOH . O 7 HOH A 84 271 84 HOH HOH . O 7 HOH A 85 272 85 HOH HOH . O 7 HOH A 86 273 86 HOH HOH . O 7 HOH A 87 274 87 HOH HOH . O 7 HOH A 88 275 88 HOH HOH . O 7 HOH A 89 276 89 HOH HOH . O 7 HOH A 90 277 90 HOH HOH . O 7 HOH A 91 278 91 HOH HOH . O 7 HOH A 92 279 92 HOH HOH . O 7 HOH A 93 280 93 HOH HOH . O 7 HOH A 94 281 94 HOH HOH . O 7 HOH A 95 282 95 HOH HOH . O 7 HOH A 96 283 96 HOH HOH . O 7 HOH A 97 284 97 HOH HOH . O 7 HOH A 98 285 98 HOH HOH . O 7 HOH A 99 286 99 HOH HOH . O 7 HOH A 100 287 100 HOH HOH . O 7 HOH A 101 288 101 HOH HOH . O 7 HOH A 102 289 102 HOH HOH . O 7 HOH A 103 290 103 HOH HOH . O 7 HOH A 104 291 104 HOH HOH . O 7 HOH A 105 292 105 HOH HOH . O 7 HOH A 106 293 106 HOH HOH . O 7 HOH A 107 294 107 HOH HOH . O 7 HOH A 108 295 108 HOH HOH . O 7 HOH A 109 296 109 HOH HOH . O 7 HOH A 110 297 110 HOH HOH . O 7 HOH A 111 298 111 HOH HOH . O 7 HOH A 112 299 112 HOH HOH . O 7 HOH A 113 300 113 HOH HOH . O 7 HOH A 114 301 114 HOH HOH . O 7 HOH A 115 302 115 HOH HOH . O 7 HOH A 116 303 116 HOH HOH . O 7 HOH A 117 304 117 HOH HOH . O 7 HOH A 118 305 118 HOH HOH . O 7 HOH A 119 306 119 HOH HOH . O 7 HOH A 120 307 120 HOH HOH . O 7 HOH A 121 308 121 HOH HOH . O 7 HOH A 122 309 122 HOH HOH . O 7 HOH A 123 310 123 HOH HOH . O 7 HOH A 124 311 124 HOH HOH . O 7 HOH A 125 312 125 HOH HOH . O 7 HOH A 126 313 126 HOH HOH . O 7 HOH A 127 314 127 HOH HOH . O 7 HOH A 128 315 128 HOH HOH . O 7 HOH A 129 316 129 HOH HOH . O 7 HOH A 130 317 130 HOH HOH . O 7 HOH A 131 318 131 HOH HOH . O 7 HOH A 132 319 132 HOH HOH . O 7 HOH A 133 320 133 HOH HOH . O 7 HOH A 134 321 134 HOH HOH . O 7 HOH A 135 322 135 HOH HOH . O 7 HOH A 136 323 136 HOH HOH . O 7 HOH A 137 324 137 HOH HOH . O 7 HOH A 138 325 138 HOH HOH . O 7 HOH A 139 326 139 HOH HOH . O 7 HOH A 140 327 140 HOH HOH . O 7 HOH A 141 328 141 HOH HOH . O 7 HOH A 142 329 142 HOH HOH . O 7 HOH A 143 330 143 HOH HOH . O 7 HOH A 144 331 144 HOH HOH . O 7 HOH A 145 332 145 HOH HOH . O 7 HOH A 146 333 146 HOH HOH . O 7 HOH A 147 334 147 HOH HOH . O 7 HOH A 148 335 148 HOH HOH . O 7 HOH A 149 336 149 HOH HOH . O 7 HOH A 150 337 150 HOH HOH . O 7 HOH A 151 338 151 HOH HOH . O 7 HOH A 152 339 152 HOH HOH . O 7 HOH A 153 340 153 HOH HOH . O 7 HOH A 154 341 154 HOH HOH . O 7 HOH A 155 342 155 HOH HOH . O 7 HOH A 156 343 156 HOH HOH . O 7 HOH A 157 344 157 HOH HOH . O 7 HOH A 158 345 158 HOH HOH . O 7 HOH A 159 346 159 HOH HOH . O 7 HOH A 160 347 160 HOH HOH . O 7 HOH A 161 348 161 HOH HOH . O 7 HOH A 162 349 162 HOH HOH . O 7 HOH A 163 350 163 HOH HOH . O 7 HOH A 164 351 164 HOH HOH . O 7 HOH A 165 352 165 HOH HOH . O 7 HOH A 166 353 166 HOH HOH . O 7 HOH A 167 354 167 HOH HOH . O 7 HOH A 168 355 168 HOH HOH . O 7 HOH A 169 356 169 HOH HOH . O 7 HOH A 170 357 170 HOH HOH . O 7 HOH A 171 358 171 HOH HOH . O 7 HOH A 172 359 172 HOH HOH . O 7 HOH A 173 360 173 HOH HOH . O 7 HOH A 174 361 174 HOH HOH . O 7 HOH A 175 362 175 HOH HOH . O 7 HOH A 176 363 176 HOH HOH . O 7 HOH A 177 364 177 HOH HOH . O 7 HOH A 178 365 178 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x 48.01 _atom_site.Cartn_y 0.003 _atom_site.Cartn_z 42.714 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 27.79 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 175 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #