data_3O7W # _model_server_result.job_id 1ovJhzCStXgkYz3EWST45w _model_server_result.datetime_utc '2024-12-23 06:21:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o7w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":801}' # _entry.id 3O7W # _exptl.entry_id 3O7W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 398.437 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYLMETHIONINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O7W _cell.length_a 49.086 _cell.length_b 63.296 _cell.length_c 81.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O7W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H22 N6 O5 S' _chem_comp.formula_weight 398.437 _chem_comp.id SAM _chem_comp.mon_nstd_flag . _chem_comp.name S-ADENOSYLMETHIONINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAM sing 290 n n N HN1 SAM sing 291 n n N HN2 SAM sing 292 n n CA C SAM sing 293 n n CA CB SAM sing 294 n n CA HA SAM sing 295 n n C O SAM doub 296 n n C OXT SAM sing 297 n n CB CG SAM sing 298 n n CB HB1 SAM sing 299 n n CB HB2 SAM sing 300 n n CG SD SAM sing 301 n n CG HG1 SAM sing 302 n n CG HG2 SAM sing 303 n n SD CE SAM sing 304 n n SD C5' SAM sing 305 n n CE HE1 SAM sing 306 n n CE HE2 SAM sing 307 n n CE HE3 SAM sing 308 n n C5' C4' SAM sing 309 n n C5' "H5'1" SAM sing 310 n n C5' "H5'2" SAM sing 311 n n C4' O4' SAM sing 312 n n C4' C3' SAM sing 313 n n C4' H4' SAM sing 314 n n O4' C1' SAM sing 315 n n C3' O3' SAM sing 316 n n C3' C2' SAM sing 317 n n C3' H3' SAM sing 318 n n O3' HO3' SAM sing 319 n n C2' O2' SAM sing 320 n n C2' C1' SAM sing 321 n n C2' H2' SAM sing 322 n n O2' HO2' SAM sing 323 n n C1' N9 SAM sing 324 n n C1' H1' SAM sing 325 n n N9 C8 SAM sing 326 n y N9 C4 SAM sing 327 n y C8 N7 SAM doub 328 n y C8 H8 SAM sing 329 n n N7 C5 SAM sing 330 n y C5 C6 SAM sing 331 n y C5 C4 SAM doub 332 n y C6 N6 SAM sing 333 n n C6 N1 SAM doub 334 n y N6 HN61 SAM sing 335 n n N6 HN62 SAM sing 336 n n N1 C2 SAM sing 337 n y C2 N3 SAM doub 338 n y C2 H2 SAM sing 339 n n N3 C4 SAM sing 340 n y # _atom_sites.entry_id 3O7W _atom_sites.fract_transf_matrix[1][1] 0.020372 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015799 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012229 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 701 701 GOL GOL . C 3 SAM A 1 801 801 SAM SAM . D 4 NA A 1 1 1 NA NA . E 5 HOH A 1 2 2 HOH HOH . E 5 HOH A 2 3 3 HOH HOH . E 5 HOH A 3 5 5 HOH HOH . E 5 HOH A 4 6 6 HOH HOH . E 5 HOH A 5 7 7 HOH HOH . E 5 HOH A 6 8 8 HOH HOH . E 5 HOH A 7 9 9 HOH HOH . E 5 HOH A 8 10 10 HOH HOH . E 5 HOH A 9 11 11 HOH HOH . E 5 HOH A 10 12 12 HOH HOH . E 5 HOH A 11 14 14 HOH HOH . E 5 HOH A 12 15 15 HOH HOH . E 5 HOH A 13 335 18 HOH HOH . E 5 HOH A 14 336 20 HOH HOH . E 5 HOH A 15 337 21 HOH HOH . E 5 HOH A 16 338 22 HOH HOH . E 5 HOH A 17 339 23 HOH HOH . E 5 HOH A 18 340 24 HOH HOH . E 5 HOH A 19 341 25 HOH HOH . E 5 HOH A 20 342 26 HOH HOH . E 5 HOH A 21 343 27 HOH HOH . E 5 HOH A 22 344 28 HOH HOH . E 5 HOH A 23 345 29 HOH HOH . E 5 HOH A 24 346 30 HOH HOH . E 5 HOH A 25 347 31 HOH HOH . E 5 HOH A 26 348 32 HOH HOH . E 5 HOH A 27 349 33 HOH HOH . E 5 HOH A 28 350 34 HOH HOH . E 5 HOH A 29 351 35 HOH HOH . E 5 HOH A 30 352 36 HOH HOH . E 5 HOH A 31 353 37 HOH HOH . E 5 HOH A 32 354 38 HOH HOH . E 5 HOH A 33 355 39 HOH HOH . E 5 HOH A 34 356 40 HOH HOH . E 5 HOH A 35 357 41 HOH HOH . E 5 HOH A 36 358 42 HOH HOH . E 5 HOH A 37 359 44 HOH HOH . E 5 HOH A 38 360 45 HOH HOH . E 5 HOH A 39 361 47 HOH HOH . E 5 HOH A 40 362 48 HOH HOH . E 5 HOH A 41 363 49 HOH HOH . E 5 HOH A 42 364 50 HOH HOH . E 5 HOH A 43 365 51 HOH HOH . E 5 HOH A 44 366 52 HOH HOH . E 5 HOH A 45 367 54 HOH HOH . E 5 HOH A 46 368 55 HOH HOH . E 5 HOH A 47 369 56 HOH HOH . E 5 HOH A 48 370 57 HOH HOH . E 5 HOH A 49 371 58 HOH HOH . E 5 HOH A 50 372 59 HOH HOH . E 5 HOH A 51 373 60 HOH HOH . E 5 HOH A 52 374 61 HOH HOH . E 5 HOH A 53 375 63 HOH HOH . E 5 HOH A 54 376 65 HOH HOH . E 5 HOH A 55 377 66 HOH HOH . E 5 HOH A 56 378 67 HOH HOH . E 5 HOH A 57 379 68 HOH HOH . E 5 HOH A 58 380 70 HOH HOH . E 5 HOH A 59 381 71 HOH HOH . E 5 HOH A 60 382 72 HOH HOH . E 5 HOH A 61 383 73 HOH HOH . E 5 HOH A 62 384 74 HOH HOH . E 5 HOH A 63 385 75 HOH HOH . E 5 HOH A 64 386 76 HOH HOH . E 5 HOH A 65 387 77 HOH HOH . E 5 HOH A 66 388 78 HOH HOH . E 5 HOH A 67 389 79 HOH HOH . E 5 HOH A 68 390 80 HOH HOH . E 5 HOH A 69 391 81 HOH HOH . E 5 HOH A 70 392 82 HOH HOH . E 5 HOH A 71 393 83 HOH HOH . E 5 HOH A 72 394 84 HOH HOH . E 5 HOH A 73 395 86 HOH HOH . E 5 HOH A 74 396 87 HOH HOH . E 5 HOH A 75 397 88 HOH HOH . E 5 HOH A 76 398 90 HOH HOH . E 5 HOH A 77 399 91 HOH HOH . E 5 HOH A 78 400 94 HOH HOH . E 5 HOH A 79 401 95 HOH HOH . E 5 HOH A 80 402 96 HOH HOH . E 5 HOH A 81 403 99 HOH HOH . E 5 HOH A 82 404 100 HOH HOH . E 5 HOH A 83 405 102 HOH HOH . E 5 HOH A 84 406 105 HOH HOH . E 5 HOH A 85 407 106 HOH HOH . E 5 HOH A 86 408 107 HOH HOH . E 5 HOH A 87 409 109 HOH HOH . E 5 HOH A 88 410 110 HOH HOH . E 5 HOH A 89 411 115 HOH HOH . E 5 HOH A 90 412 116 HOH HOH . E 5 HOH A 91 413 117 HOH HOH . E 5 HOH A 92 414 119 HOH HOH . E 5 HOH A 93 415 121 HOH HOH . E 5 HOH A 94 416 122 HOH HOH . E 5 HOH A 95 417 123 HOH HOH . E 5 HOH A 96 418 125 HOH HOH . E 5 HOH A 97 419 129 HOH HOH . E 5 HOH A 98 420 130 HOH HOH . E 5 HOH A 99 421 131 HOH HOH . E 5 HOH A 100 422 134 HOH HOH . E 5 HOH A 101 423 135 HOH HOH . E 5 HOH A 102 424 137 HOH HOH . E 5 HOH A 103 425 139 HOH HOH . E 5 HOH A 104 426 140 HOH HOH . E 5 HOH A 105 427 141 HOH HOH . E 5 HOH A 106 428 143 HOH HOH . E 5 HOH A 107 429 145 HOH HOH . E 5 HOH A 108 430 146 HOH HOH . E 5 HOH A 109 431 147 HOH HOH . E 5 HOH A 110 432 148 HOH HOH . E 5 HOH A 111 433 149 HOH HOH . E 5 HOH A 112 434 151 HOH HOH . E 5 HOH A 113 435 152 HOH HOH . E 5 HOH A 114 436 153 HOH HOH . E 5 HOH A 115 437 155 HOH HOH . E 5 HOH A 116 438 156 HOH HOH . E 5 HOH A 117 439 157 HOH HOH . E 5 HOH A 118 440 158 HOH HOH . E 5 HOH A 119 441 159 HOH HOH . E 5 HOH A 120 442 160 HOH HOH . E 5 HOH A 121 443 163 HOH HOH . E 5 HOH A 122 444 165 HOH HOH . E 5 HOH A 123 445 168 HOH HOH . E 5 HOH A 124 446 170 HOH HOH . E 5 HOH A 125 447 171 HOH HOH . E 5 HOH A 126 448 172 HOH HOH . E 5 HOH A 127 449 173 HOH HOH . E 5 HOH A 128 450 174 HOH HOH . E 5 HOH A 129 451 177 HOH HOH . E 5 HOH A 130 452 178 HOH HOH . E 5 HOH A 131 453 179 HOH HOH . E 5 HOH A 132 454 181 HOH HOH . E 5 HOH A 133 455 182 HOH HOH . E 5 HOH A 134 456 183 HOH HOH . E 5 HOH A 135 457 186 HOH HOH . E 5 HOH A 136 458 188 HOH HOH . E 5 HOH A 137 459 191 HOH HOH . E 5 HOH A 138 460 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAM . . . C 3 26.239 -4.022 -1.048 1 27.43 ? N SAM 801 A 1 HETATM 2 C CA SAM . . . C 3 26.128 -5.086 0.034 1 29.01 ? CA SAM 801 A 1 HETATM 3 C C SAM . . . C 3 25.793 -4.435 1.376 1 29.44 ? C SAM 801 A 1 HETATM 4 O O SAM . . . C 3 26.148 -3.256 1.593 1 28.62 ? O SAM 801 A 1 HETATM 5 O OXT SAM . . . C 3 25.186 -5.086 2.27 1 31.42 ? OXT SAM 801 A 1 HETATM 6 C CB SAM . . . C 3 27.399 -5.94 0.211 1 27.83 ? CB SAM 801 A 1 HETATM 7 C CG SAM . . . C 3 28.674 -5.137 0.552 1 27.92 ? CG SAM 801 A 1 HETATM 8 S SD SAM . . . C 3 30.133 -6.241 0.684 1 29.07 ? SD SAM 801 A 1 HETATM 9 C CE SAM . . . C 3 31.32 -5.155 1.537 1 33.08 ? CE SAM 801 A 1 HETATM 10 C C5' SAM . . . C 3 30.853 -6.03 -0.961 1 27.78 ? C5' SAM 801 A 1 HETATM 11 C C4' SAM . . . C 3 30.316 -7.022 -1.962 1 29.7 ? C4' SAM 801 A 1 HETATM 12 O O4' SAM . . . C 3 30.964 -6.637 -3.145 1 34.09 ? O4' SAM 801 A 1 HETATM 13 C C3' SAM . . . C 3 30.66 -8.49 -1.695 1 28.74 ? C3' SAM 801 A 1 HETATM 14 O O3' SAM . . . C 3 29.483 -9.293 -1.786 1 24.71 ? O3' SAM 801 A 1 HETATM 15 C C2' SAM . . . C 3 31.687 -8.785 -2.787 1 28.93 ? C2' SAM 801 A 1 HETATM 16 O O2' SAM . . . C 3 31.654 -10.12 -3.251 1 29.62 ? O2' SAM 801 A 1 HETATM 17 C C1' SAM . . . C 3 31.287 -7.791 -3.865 1 30.02 ? C1' SAM 801 A 1 HETATM 18 N N9 SAM . . . C 3 32.397 -7.512 -4.771 1 28.98 ? N9 SAM 801 A 1 HETATM 19 C C8 SAM . . . C 3 33.613 -6.924 -4.473 1 27.45 ? C8 SAM 801 A 1 HETATM 20 N N7 SAM . . . C 3 34.319 -6.847 -5.642 1 23.66 ? N7 SAM 801 A 1 HETATM 21 C C5 SAM . . . C 3 33.602 -7.431 -6.629 1 24.27 ? C5 SAM 801 A 1 HETATM 22 C C6 SAM . . . C 3 33.884 -7.714 -7.964 1 24.87 ? C6 SAM 801 A 1 HETATM 23 N N6 SAM . . . C 3 35.04 -7.323 -8.509 1 22.13 ? N6 SAM 801 A 1 HETATM 24 N N1 SAM . . . C 3 32.912 -8.29 -8.74 1 24.67 ? N1 SAM 801 A 1 HETATM 25 C C2 SAM . . . C 3 31.717 -8.681 -8.202 1 25.94 ? C2 SAM 801 A 1 HETATM 26 N N3 SAM . . . C 3 31.447 -8.412 -6.875 1 28.11 ? N3 SAM 801 A 1 HETATM 27 C C4 SAM . . . C 3 32.38 -7.825 -6.102 1 27.66 ? C4 SAM 801 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #