data_3O82 # _model_server_result.job_id E0XMYKYMKQP3iw30EutJnw _model_server_result.datetime_utc '2024-10-19 10:33:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o82 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3O82 # _exptl.entry_id 3O82 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 482.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-O-{[(2,3-dihydroxyphenyl)carbonyl]sulfamoyl}adenosine" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O82 _cell.length_a 65.447 _cell.length_b 145.259 _cell.length_c 149.063 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O82 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 A,B,C,D,E,F,G,H,I,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O GLN 55 A GLN 53 1_555 D CA CA . A CA 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.406 ? metalc ? metalc2 A OE2 GLU 60 A GLU 58 1_555 D CA CA . A CA 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc3 A OE1 GLU 60 A GLU 58 1_555 D CA CA . A CA 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.59 ? metalc ? metalc4 A O GLN 307 A GLN 305 1_555 E CA CA . A CA 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc5 A O LEU 309 A LEU 307 1_555 E CA CA . A CA 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.384 ? metalc ? metalc6 A O ASN 332 A ASN 330 1_555 E CA CA . A CA 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc7 D CA CA . A CA 543 1_555 I O HOH . A HOH 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc8 D CA CA . A CA 543 1_555 I O HOH . A HOH 558 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc9 B O GLN 55 B GLN 53 1_555 G CA CA . B CA 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc10 B O GLN 307 B GLN 305 1_555 H CA CA . B CA 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc11 B O LEU 309 B LEU 307 1_555 H CA CA . B CA 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.57 ? metalc ? metalc12 B O ASN 332 B ASN 330 1_555 H CA CA . B CA 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc13 G CA CA . B CA 543 1_555 J O HOH . B HOH 565 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc14 G CA CA . B CA 543 1_555 J O HOH . B HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? metalc ? metalc15 H CA CA . B CA 544 1_555 J O HOH . B HOH 568 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? # _chem_comp.formula 'C17 H18 N6 O9 S' _chem_comp.formula_weight 482.425 _chem_comp.id HP8 _chem_comp.mon_nstd_flag . _chem_comp.name "5'-O-{[(2,3-dihydroxyphenyl)carbonyl]sulfamoyl}adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "5'-O-[N-(2,3-dihydroxybenzoyl)sulfamoyl] adenosine" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OS1 S HP8 doub 152 n n NHS S HP8 sing 153 n n S OS2 HP8 doub 154 n n S O5' HP8 sing 155 n n C6 N1 HP8 doub 156 n y N1 C2 HP8 sing 157 n y N3 C2 HP8 doub 158 n y C2 H2 HP8 sing 159 n n C4 N3 HP8 sing 160 n y N9 C4 HP8 sing 161 n y C5 C4 HP8 doub 162 n y N7 C5 HP8 sing 163 n y C5 C6 HP8 sing 164 n y N6 C6 HP8 sing 165 n n N6 HN6 HP8 sing 166 n n N6 HN6A HP8 sing 167 n n C8 N7 HP8 doub 168 n y C8 N9 HP8 sing 169 n y C8 H8 HP8 sing 170 n n C1' N9 HP8 sing 171 n n C21 O9 HP8 doub 172 n n O4' C1' HP8 sing 173 n n C2' C1' HP8 sing 174 n n C1' H1' HP8 sing 175 n n C2S C1S HP8 doub 176 n y C1S C21 HP8 sing 177 n n C1S C6S HP8 sing 178 n y C3' C2' HP8 sing 179 n n C2' O2' HP8 sing 180 n n C2' H2' HP8 sing 181 n n O2' HO2' HP8 sing 182 n n NHS C21 HP8 sing 183 n n O2S C2S HP8 sing 184 n n C3S C2S HP8 sing 185 n y O2S HO2S HP8 sing 186 n n O3' C3' HP8 sing 187 n n C3' C4' HP8 sing 188 n n C3' H3' HP8 sing 189 n n O3' HO3' HP8 sing 190 n n O3S C3S HP8 sing 191 n n C3S C4S HP8 doub 192 n y O3S HO3S HP8 sing 193 n n C5' C4' HP8 sing 194 n n C4' O4' HP8 sing 195 n n C4' H4' HP8 sing 196 n n C4S C5S HP8 sing 197 n y C4S H4S HP8 sing 198 n n C5' O5' HP8 sing 199 n n C5' H5' HP8 sing 200 n n C5' "H5'A" HP8 sing 201 n n C5S C6S HP8 doub 202 n y C5S H5S HP8 sing 203 n n C6S H6S HP8 sing 204 n n NHS HNHS HP8 sing 205 n n # _atom_sites.entry_id 3O82 _atom_sites.fract_transf_matrix[1][1] 0.01528 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006709 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HP8 A 1 601 601 HP8 HP8 . D 3 CA A 1 543 1 CA CA . E 3 CA A 1 544 4 CA CA . F 2 HP8 B 1 602 602 HP8 HP8 . G 3 CA B 1 543 2 CA CA . H 3 CA B 1 544 3 CA CA . I 4 HOH A 1 545 1 HOH HOH . I 4 HOH A 2 546 2 HOH HOH . I 4 HOH A 3 547 3 HOH HOH . I 4 HOH A 4 548 4 HOH HOH . I 4 HOH A 5 549 5 HOH HOH . I 4 HOH A 6 550 6 HOH HOH . I 4 HOH A 7 551 7 HOH HOH . I 4 HOH A 8 552 8 HOH HOH . I 4 HOH A 9 553 9 HOH HOH . I 4 HOH A 10 554 11 HOH HOH . I 4 HOH A 11 555 12 HOH HOH . I 4 HOH A 12 556 13 HOH HOH . I 4 HOH A 13 557 29 HOH HOH . I 4 HOH A 14 558 30 HOH HOH . I 4 HOH A 15 559 31 HOH HOH . I 4 HOH A 16 560 32 HOH HOH . I 4 HOH A 17 561 33 HOH HOH . I 4 HOH A 18 562 34 HOH HOH . I 4 HOH A 19 563 35 HOH HOH . I 4 HOH A 20 564 36 HOH HOH . I 4 HOH A 21 565 37 HOH HOH . I 4 HOH A 22 566 38 HOH HOH . I 4 HOH A 23 567 39 HOH HOH . I 4 HOH A 24 568 40 HOH HOH . I 4 HOH A 25 569 42 HOH HOH . J 4 HOH B 1 545 10 HOH HOH . J 4 HOH B 2 546 14 HOH HOH . J 4 HOH B 3 547 15 HOH HOH . J 4 HOH B 4 548 16 HOH HOH . J 4 HOH B 5 549 17 HOH HOH . J 4 HOH B 6 550 18 HOH HOH . J 4 HOH B 7 551 19 HOH HOH . J 4 HOH B 8 552 20 HOH HOH . J 4 HOH B 9 553 21 HOH HOH . J 4 HOH B 10 554 22 HOH HOH . J 4 HOH B 11 555 23 HOH HOH . J 4 HOH B 12 556 24 HOH HOH . J 4 HOH B 13 557 25 HOH HOH . J 4 HOH B 14 558 26 HOH HOH . J 4 HOH B 15 559 27 HOH HOH . J 4 HOH B 16 560 28 HOH HOH . J 4 HOH B 17 561 41 HOH HOH . J 4 HOH B 18 562 43 HOH HOH . J 4 HOH B 19 563 44 HOH HOH . J 4 HOH B 20 564 45 HOH HOH . J 4 HOH B 21 565 46 HOH HOH . J 4 HOH B 22 566 47 HOH HOH . J 4 HOH B 23 567 48 HOH HOH . J 4 HOH B 24 568 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S HP8 . . . C 2 -20.094 -6.524 13.382 1 46.15 ? S HP8 601 A 1 HETATM 2 N N1 HP8 . . . C 2 -26.068 -2.103 6.736 1 36.76 ? N1 HP8 601 A 1 HETATM 3 C C2 HP8 . . . C 2 -24.837 -1.689 6.463 1 37.77 ? C2 HP8 601 A 1 HETATM 4 N N3 HP8 . . . C 2 -23.783 -2 7.241 1 41 ? N3 HP8 601 A 1 HETATM 5 C C4 HP8 . . . C 2 -23.926 -2.754 8.363 1 40.9 ? C4 HP8 601 A 1 HETATM 6 C C5 HP8 . . . C 2 -25.207 -3.179 8.696 1 39.48 ? C5 HP8 601 A 1 HETATM 7 C C6 HP8 . . . C 2 -26.276 -2.829 7.864 1 38.6 ? C6 HP8 601 A 1 HETATM 8 N N6 HP8 . . . C 2 -27.538 -3.204 8.133 1 37.66 ? N6 HP8 601 A 1 HETATM 9 N N7 HP8 . . . C 2 -25.065 -3.888 9.843 1 40.49 ? N7 HP8 601 A 1 HETATM 10 C C8 HP8 . . . C 2 -23.758 -3.905 10.231 1 37.68 ? C8 HP8 601 A 1 HETATM 11 N N9 HP8 . . . C 2 -23.054 -3.215 9.303 1 41.24 ? N9 HP8 601 A 1 HETATM 12 O O9 HP8 . . . C 2 -22.245 -6.608 11.663 1 50.07 ? O9 HP8 601 A 1 HETATM 13 C C1' HP8 . . . C 2 -21.58 -2.955 9.355 1 39.21 ? C1' HP8 601 A 1 HETATM 14 C C1S HP8 . . . C 2 -23.98 -6.725 13.274 1 46.02 ? C1S HP8 601 A 1 HETATM 15 C C2' HP8 . . . C 2 -21.406 -1.617 10.075 1 40.06 ? C2' HP8 601 A 1 HETATM 16 O O2' HP8 . . . C 2 -20.317 -0.958 9.519 1 37.31 ? O2' HP8 601 A 1 HETATM 17 C C21 HP8 . . . C 2 -22.543 -6.678 12.851 1 46.72 ? C21 HP8 601 A 1 HETATM 18 C C2S HP8 . . . C 2 -24.333 -6.839 14.605 1 45.47 ? C2S HP8 601 A 1 HETATM 19 O O2S HP8 . . . C 2 -23.401 -6.91 15.612 1 43.34 ? O2S HP8 601 A 1 HETATM 20 C C3' HP8 . . . C 2 -21.012 -1.953 11.501 1 39.83 ? C3' HP8 601 A 1 HETATM 21 O O3' HP8 . . . C 2 -20.082 -1.033 12.045 1 38.01 ? O3' HP8 601 A 1 HETATM 22 C C3S HP8 . . . C 2 -25.66 -6.908 14.918 1 46.16 ? C3S HP8 601 A 1 HETATM 23 O O3S HP8 . . . C 2 -25.995 -7.012 16.207 1 55.97 ? O3S HP8 601 A 1 HETATM 24 C C4' HP8 . . . C 2 -20.351 -3.296 11.351 1 38.72 ? C4' HP8 601 A 1 HETATM 25 O O4' HP8 . . . C 2 -20.974 -3.896 10.236 1 37.27 ? O4' HP8 601 A 1 HETATM 26 C C4S HP8 . . . C 2 -26.674 -6.886 14.005 1 45.2 ? C4S HP8 601 A 1 HETATM 27 C C5' HP8 . . . C 2 -20.624 -4.134 12.541 1 40.14 ? C5' HP8 601 A 1 HETATM 28 O O5' HP8 . . . C 2 -19.895 -5.353 12.391 1 45.4 ? O5' HP8 601 A 1 HETATM 29 C C5S HP8 . . . C 2 -26.309 -6.78 12.675 1 47.15 ? C5S HP8 601 A 1 HETATM 30 C C6S HP8 . . . C 2 -24.965 -6.714 12.308 1 46.64 ? C6S HP8 601 A 1 HETATM 31 N NHS HP8 . . . C 2 -21.609 -6.71 13.785 1 44.8 ? NHS HP8 601 A 1 HETATM 32 O OS1 HP8 . . . C 2 -19.463 -6.005 14.553 1 49.6 ? OS1 HP8 601 A 1 HETATM 33 O OS2 HP8 . . . C 2 -19.61 -7.76 12.868 1 43.88 ? OS2 HP8 601 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 33 #