data_3O8A
#
_model_server_result.job_id            AExUX9DEUayOow29cakoDw 
_model_server_result.datetime_utc      '2024-11-26 00:24:41' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":1001}' 
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_entry.id    3O8A 
#
_exptl.entry_id    3O8A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              381.372 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-cyclopropyl-5-[2-methyl-5-(trifluoromethoxy)-1H-benzimidazol-1-yl]thiophene-2-carboxamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3O8A 
_cell.length_a            85.287 
_cell.length_b            85.287 
_cell.length_c            138.719 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H14 F3 N3 O2 S' 
_chem_comp.formula_weight    381.372 
_chem_comp.id                O8A 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-cyclopropyl-5-[2-methyl-5-(trifluoromethoxy)-1H-benzimidazol-1-yl]thiophene-2-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 N1 O8A sing 337 n y 
C1 C2 O8A doub 338 n y 
C1 C6 O8A sing 339 n y 
F1 C8 O8A sing 340 n n 
N1 C7 O8A doub 341 n y 
O1 C5 O8A sing 342 n n 
O1 C8 O8A sing 343 n n 
S1 C10 O8A sing 344 n y 
S1 C11 O8A sing 345 n y 
C2 N2 O8A sing 346 n y 
C2 C3 O8A sing 347 n y 
F2 C8 O8A sing 348 n n 
N2 C7 O8A sing 349 n y 
N2 C10 O8A sing 350 n y 
O2 C14 O8A doub 351 n n 
C3 C4 O8A doub 352 n y 
F3 C8 O8A sing 353 n n 
N3 C14 O8A sing 354 n n 
N3 C15 O8A sing 355 n n 
C4 C5 O8A sing 356 n y 
C5 C6 O8A doub 357 n y 
C7 C9 O8A sing 358 n n 
C10 C13 O8A doub 359 n y 
C11 C12 O8A doub 360 n y 
C11 C14 O8A sing 361 n n 
C12 C13 O8A sing 362 n y 
C15 C16 O8A sing 363 n n 
C15 C17 O8A sing 364 n n 
C16 C17 O8A sing 365 n n 
C3 H3 O8A sing 366 n n 
N3 HN3 O8A sing 367 n n 
C4 H4 O8A sing 368 n n 
C6 H6 O8A sing 369 n n 
C9 H9 O8A sing 370 n n 
C9 H9A O8A sing 371 n n 
C9 H9B O8A sing 372 n n 
C12 H12 O8A sing 373 n n 
C13 H13 O8A sing 374 n n 
C15 H15 O8A sing 375 n n 
C16 H16 O8A sing 376 n n 
C16 H16A O8A sing 377 n n 
C17 H17 O8A sing 378 n n 
C17 H17A O8A sing 379 n n 
#
_atom_sites.entry_id                     3O8A 
_atom_sites.fract_transf_matrix[1][1]    0.011725 
_atom_sites.fract_transf_matrix[1][2]    0.006769 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O8A A 1 1001 1001 O8A O8A . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 ORO A 1 1003 1003 ORO ORO . 
E 5 LDA A 1 1004 1004 LDA LDA . 
F 6 HOH A 1 600 600 HOH HOH . 
F 6 HOH A 2 601 601 HOH HOH . 
F 6 HOH A 3 602 602 HOH HOH . 
F 6 HOH A 4 603 603 HOH HOH . 
F 6 HOH A 5 604 604 HOH HOH . 
F 6 HOH A 6 605 605 HOH HOH . 
F 6 HOH A 7 606 606 HOH HOH . 
F 6 HOH A 8 607 607 HOH HOH . 
F 6 HOH A 9 608 608 HOH HOH . 
F 6 HOH A 10 609 609 HOH HOH . 
F 6 HOH A 11 610 610 HOH HOH . 
F 6 HOH A 12 611 611 HOH HOH . 
F 6 HOH A 13 612 612 HOH HOH . 
F 6 HOH A 14 613 613 HOH HOH . 
F 6 HOH A 15 614 614 HOH HOH . 
F 6 HOH A 16 615 615 HOH HOH . 
F 6 HOH A 17 616 616 HOH HOH . 
F 6 HOH A 18 617 617 HOH HOH . 
F 6 HOH A 19 618 618 HOH HOH . 
F 6 HOH A 20 619 619 HOH HOH . 
F 6 HOH A 21 620 620 HOH HOH . 
F 6 HOH A 22 621 621 HOH HOH . 
F 6 HOH A 23 622 622 HOH HOH . 
F 6 HOH A 24 623 623 HOH HOH . 
F 6 HOH A 25 624 624 HOH HOH . 
F 6 HOH A 26 625 625 HOH HOH . 
F 6 HOH A 27 626 626 HOH HOH . 
F 6 HOH A 28 627 627 HOH HOH . 
F 6 HOH A 29 628 628 HOH HOH . 
F 6 HOH A 30 629 629 HOH HOH . 
F 6 HOH A 31 630 630 HOH HOH . 
F 6 HOH A 32 631 631 HOH HOH . 
F 6 HOH A 33 632 632 HOH HOH . 
F 6 HOH A 34 633 633 HOH HOH . 
F 6 HOH A 35 634 634 HOH HOH . 
F 6 HOH A 36 635 635 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 O8A . . . B 2 31.402 -9.845 17.28 1 59.24 ? C1 O8A 1001 A 1 
HETATM 2 F F1 O8A . . . B 2 32.919 -6.729 19.717 1 69.06 ? F1 O8A 1001 A 1 
HETATM 3 N N1 O8A . . . B 2 31.844 -10.435 16.154 1 57.85 ? N1 O8A 1001 A 1 
HETATM 4 O O1 O8A . . . B 2 31.658 -8.272 20.516 1 65.8 ? O1 O8A 1001 A 1 
HETATM 5 S S1 O8A . . . B 2 27.333 -11.817 16.556 1 54.21 ? S1 O8A 1001 A 1 
HETATM 6 C C2 O8A . . . B 2 29.964 -9.842 17.155 1 59.36 ? C2 O8A 1001 A 1 
HETATM 7 F F2 O8A . . . B 2 31.057 -6.232 20.504 1 66.92 ? F2 O8A 1001 A 1 
HETATM 8 N N2 O8A . . . B 2 29.613 -10.39 15.973 1 56.21 ? N2 O8A 1001 A 1 
HETATM 9 O O2 O8A . . . B 2 24.855 -13.11 16.795 1 57.54 ? O2 O8A 1001 A 1 
HETATM 10 C C3 O8A . . . B 2 29.163 -9.315 18.121 1 58.66 ? C3 O8A 1001 A 1 
HETATM 11 F F3 O8A . . . B 2 32.632 -6.722 21.724 1 68.87 ? F3 O8A 1001 A 1 
HETATM 12 N N3 O8A . . . B 2 23.763 -12.309 15.132 1 53.93 ? N3 O8A 1001 A 1 
HETATM 13 C C4 O8A . . . B 2 29.775 -8.793 19.238 1 59.61 ? C4 O8A 1001 A 1 
HETATM 14 C C5 O8A . . . B 2 31.14 -8.78 19.382 1 63.35 ? C5 O8A 1001 A 1 
HETATM 15 C C6 O8A . . . B 2 31.964 -9.311 18.415 1 61.08 ? C6 O8A 1001 A 1 
HETATM 16 C C7 O8A . . . B 2 30.822 -10.791 15.357 1 57.53 ? C7 O8A 1001 A 1 
HETATM 17 C C8 O8A . . . B 2 32.071 -6.971 20.618 1 67.23 ? C8 O8A 1001 A 1 
HETATM 18 C C9 O8A . . . B 2 30.725 -11.447 14.019 1 56.76 ? C9 O8A 1001 A 1 
HETATM 19 C C10 O8A . . . B 2 28.294 -10.794 15.633 1 55.1 ? C10 O8A 1001 A 1 
HETATM 20 C C11 O8A . . . B 2 26.047 -11.682 15.466 1 54.24 ? C11 O8A 1001 A 1 
HETATM 21 C C12 O8A . . . B 2 26.385 -10.848 14.424 1 52.8 ? C12 O8A 1001 A 1 
HETATM 22 C C13 O8A . . . B 2 27.666 -10.329 14.517 1 53.82 ? C13 O8A 1001 A 1 
HETATM 23 C C14 O8A . . . B 2 24.843 -12.43 15.831 1 54.22 ? C14 O8A 1001 A 1 
HETATM 24 C C15 O8A . . . B 2 22.539 -12.854 15.607 1 54.56 ? C15 O8A 1001 A 1 
HETATM 25 C C16 O8A . . . B 2 21.652 -13.138 14.427 1 54.48 ? C16 O8A 1001 A 1 
HETATM 26 C C17 O8A . . . B 2 22.387 -14.266 15.105 1 54.74 ? C17 O8A 1001 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#