data_3O8A
#
_model_server_result.job_id            l0TBTRX2ddCJGZiru4NbKw 
_model_server_result.datetime_utc      '2025-02-18 09:02:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1002}' 
#
_entry.id    3O8A 
#
_exptl.entry_id    3O8A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3O8A 
_cell.length_a            85.287 
_cell.length_b            85.287 
_cell.length_c            138.719 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     3O8A 
_atom_sites.fract_transf_matrix[1][1]    0.011725 
_atom_sites.fract_transf_matrix[1][2]    0.006769 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O8A A 1 1001 1001 O8A O8A . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 ORO A 1 1003 1003 ORO ORO . 
E 5 LDA A 1 1004 1004 LDA LDA . 
F 6 HOH A 1 600 600 HOH HOH . 
F 6 HOH A 2 601 601 HOH HOH . 
F 6 HOH A 3 602 602 HOH HOH . 
F 6 HOH A 4 603 603 HOH HOH . 
F 6 HOH A 5 604 604 HOH HOH . 
F 6 HOH A 6 605 605 HOH HOH . 
F 6 HOH A 7 606 606 HOH HOH . 
F 6 HOH A 8 607 607 HOH HOH . 
F 6 HOH A 9 608 608 HOH HOH . 
F 6 HOH A 10 609 609 HOH HOH . 
F 6 HOH A 11 610 610 HOH HOH . 
F 6 HOH A 12 611 611 HOH HOH . 
F 6 HOH A 13 612 612 HOH HOH . 
F 6 HOH A 14 613 613 HOH HOH . 
F 6 HOH A 15 614 614 HOH HOH . 
F 6 HOH A 16 615 615 HOH HOH . 
F 6 HOH A 17 616 616 HOH HOH . 
F 6 HOH A 18 617 617 HOH HOH . 
F 6 HOH A 19 618 618 HOH HOH . 
F 6 HOH A 20 619 619 HOH HOH . 
F 6 HOH A 21 620 620 HOH HOH . 
F 6 HOH A 22 621 621 HOH HOH . 
F 6 HOH A 23 622 622 HOH HOH . 
F 6 HOH A 24 623 623 HOH HOH . 
F 6 HOH A 25 624 624 HOH HOH . 
F 6 HOH A 26 625 625 HOH HOH . 
F 6 HOH A 27 626 626 HOH HOH . 
F 6 HOH A 28 627 627 HOH HOH . 
F 6 HOH A 29 628 628 HOH HOH . 
F 6 HOH A 30 629 629 HOH HOH . 
F 6 HOH A 31 630 630 HOH HOH . 
F 6 HOH A 32 631 631 HOH HOH . 
F 6 HOH A 33 632 632 HOH HOH . 
F 6 HOH A 34 633 633 HOH HOH . 
F 6 HOH A 35 634 634 HOH HOH . 
F 6 HOH A 36 635 635 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . C 3 16.881 -13.484 4.083 1 61.73 ? N1 FMN 1002 A 1 
HETATM 2 C C2 FMN . . . C 3 16.316 -12.55 3.261 1 64.39 ? C2 FMN 1002 A 1 
HETATM 3 O O2 FMN . . . C 3 16.173 -12.774 2.037 1 66.93 ? O2 FMN 1002 A 1 
HETATM 4 N N3 FMN . . . C 3 15.872 -11.365 3.813 1 64.37 ? N3 FMN 1002 A 1 
HETATM 5 C C4 FMN . . . C 3 16.006 -11.091 5.151 1 63.37 ? C4 FMN 1002 A 1 
HETATM 6 O O4 FMN . . . C 3 15.631 -10.023 5.615 1 63.25 ? O4 FMN 1002 A 1 
HETATM 7 C C4A FMN . . . C 3 16.599 -12.005 5.976 1 64.43 ? C4A FMN 1002 A 1 
HETATM 8 N N5 FMN . . . C 3 16.733 -11.726 7.326 1 65.6 ? N5 FMN 1002 A 1 
HETATM 9 C C5A FMN . . . C 3 17.325 -12.671 8.158 1 64.86 ? C5A FMN 1002 A 1 
HETATM 10 C C6 FMN . . . C 3 17.484 -12.422 9.526 1 63.12 ? C6 FMN 1002 A 1 
HETATM 11 C C7 FMN . . . C 3 18.099 -13.38 10.329 1 62.57 ? C7 FMN 1002 A 1 
HETATM 12 C C7M FMN . . . C 3 18.298 -13.126 11.795 1 62.89 ? C7M FMN 1002 A 1 
HETATM 13 C C8 FMN . . . C 3 18.555 -14.568 9.779 1 64.88 ? C8 FMN 1002 A 1 
HETATM 14 C C8M FMN . . . C 3 19.232 -15.637 10.615 1 64.75 ? C8M FMN 1002 A 1 
HETATM 15 C C9 FMN . . . C 3 18.376 -14.81 8.432 1 64.83 ? C9 FMN 1002 A 1 
HETATM 16 C C9A FMN . . . C 3 17.782 -13.861 7.608 1 64.08 ? C9A FMN 1002 A 1 
HETATM 17 N N10 FMN . . . C 3 17.621 -14.141 6.259 1 63.99 ? N10 FMN 1002 A 1 
HETATM 18 C C10 FMN . . . C 3 17.029 -13.215 5.434 1 64.9 ? C10 FMN 1002 A 1 
HETATM 19 C C1' FMN . . . C 3 18.111 -15.438 5.662 1 64.48 ? C1' FMN 1002 A 1 
HETATM 20 C C2' FMN . . . C 3 19.616 -15.261 5.365 1 65 ? C2' FMN 1002 A 1 
HETATM 21 O O2' FMN . . . C 3 19.767 -14.217 4.42 1 58.57 ? O2' FMN 1002 A 1 
HETATM 22 C C3' FMN . . . C 3 20.237 -16.541 4.809 1 66.04 ? C3' FMN 1002 A 1 
HETATM 23 O O3' FMN . . . C 3 19.587 -16.828 3.612 1 69.62 ? O3' FMN 1002 A 1 
HETATM 24 C C4' FMN . . . C 3 20.057 -17.764 5.695 1 68.24 ? C4' FMN 1002 A 1 
HETATM 25 O O4' FMN . . . C 3 20.521 -17.47 6.99 1 70.51 ? O4' FMN 1002 A 1 
HETATM 26 C C5' FMN . . . C 3 20.852 -18.96 5.215 1 70.45 ? C5' FMN 1002 A 1 
HETATM 27 O O5' FMN . . . C 3 22.227 -18.682 5.327 1 68.52 ? O5' FMN 1002 A 1 
HETATM 28 P P FMN . . . C 3 23.23 -19.268 6.409 1 71.77 ? P FMN 1002 A 1 
HETATM 29 O O1P FMN . . . C 3 23.046 -18.542 7.709 1 73.95 ? O1P FMN 1002 A 1 
HETATM 30 O O2P FMN . . . C 3 24.635 -18.994 5.91 1 75.14 ? O2P FMN 1002 A 1 
HETATM 31 O O3P FMN . . . C 3 23.024 -20.751 6.595 1 73.49 ? O3P FMN 1002 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           31 
#