data_3O8A
#
_model_server_result.job_id            C7ePDq8tgGgc6HdwHJyteg 
_model_server_result.datetime_utc      '2024-11-29 13:04:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o8a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    3O8A 
#
_exptl.entry_id    3O8A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              156.096 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'OROTIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3O8A 
_cell.length_a            85.287 
_cell.length_b            85.287 
_cell.length_c            138.719 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O8A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        172 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 64' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C5 H4 N2 O4' 
_chem_comp.formula_weight    156.096 
_chem_comp.id                ORO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'OROTIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 ORO sing 380 n y 
N1 C6 ORO sing 381 n y 
N1 HN1 ORO sing 382 n n 
C2 O2 ORO doub 383 n n 
C2 N3 ORO sing 384 n y 
N3 C4 ORO sing 385 n y 
N3 HN3 ORO sing 386 n n 
C4 O4 ORO doub 387 n n 
C4 C5 ORO sing 388 n y 
C5 C6 ORO doub 389 n y 
C5 H5 ORO sing 390 n n 
C6 C7 ORO sing 391 n n 
C7 O71 ORO doub 392 n n 
C7 O72 ORO sing 393 n n 
O72 HO7 ORO sing 394 n n 
#
_atom_sites.entry_id                     3O8A 
_atom_sites.fract_transf_matrix[1][1]    0.011725 
_atom_sites.fract_transf_matrix[1][2]    0.006769 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013539 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007209 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 O8A A 1 1001 1001 O8A O8A . 
C 3 FMN A 1 1002 1002 FMN FMN . 
D 4 ORO A 1 1003 1003 ORO ORO . 
E 5 LDA A 1 1004 1004 LDA LDA . 
F 6 HOH A 1 600 600 HOH HOH . 
F 6 HOH A 2 601 601 HOH HOH . 
F 6 HOH A 3 602 602 HOH HOH . 
F 6 HOH A 4 603 603 HOH HOH . 
F 6 HOH A 5 604 604 HOH HOH . 
F 6 HOH A 6 605 605 HOH HOH . 
F 6 HOH A 7 606 606 HOH HOH . 
F 6 HOH A 8 607 607 HOH HOH . 
F 6 HOH A 9 608 608 HOH HOH . 
F 6 HOH A 10 609 609 HOH HOH . 
F 6 HOH A 11 610 610 HOH HOH . 
F 6 HOH A 12 611 611 HOH HOH . 
F 6 HOH A 13 612 612 HOH HOH . 
F 6 HOH A 14 613 613 HOH HOH . 
F 6 HOH A 15 614 614 HOH HOH . 
F 6 HOH A 16 615 615 HOH HOH . 
F 6 HOH A 17 616 616 HOH HOH . 
F 6 HOH A 18 617 617 HOH HOH . 
F 6 HOH A 19 618 618 HOH HOH . 
F 6 HOH A 20 619 619 HOH HOH . 
F 6 HOH A 21 620 620 HOH HOH . 
F 6 HOH A 22 621 621 HOH HOH . 
F 6 HOH A 23 622 622 HOH HOH . 
F 6 HOH A 24 623 623 HOH HOH . 
F 6 HOH A 25 624 624 HOH HOH . 
F 6 HOH A 26 625 625 HOH HOH . 
F 6 HOH A 27 626 626 HOH HOH . 
F 6 HOH A 28 627 627 HOH HOH . 
F 6 HOH A 29 628 628 HOH HOH . 
F 6 HOH A 30 629 629 HOH HOH . 
F 6 HOH A 31 630 630 HOH HOH . 
F 6 HOH A 32 631 631 HOH HOH . 
F 6 HOH A 33 632 632 HOH HOH . 
F 6 HOH A 34 633 633 HOH HOH . 
F 6 HOH A 35 634 634 HOH HOH . 
F 6 HOH A 36 635 635 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 ORO . . . D 4 13.745 -14.243 8.263 1 58.85 ? N1 ORO 1003 A 1 
HETATM 2 C C2 ORO . . . D 4 14.231 -15.161 7.426 1 59.36 ? C2 ORO 1003 A 1 
HETATM 3 O O2 ORO . . . D 4 14.693 -16.222 7.92 1 62.19 ? O2 ORO 1003 A 1 
HETATM 4 N N3 ORO . . . D 4 14.224 -14.969 6.073 1 58.35 ? N3 ORO 1003 A 1 
HETATM 5 C C4 ORO . . . D 4 13.738 -13.829 5.532 1 58.73 ? C4 ORO 1003 A 1 
HETATM 6 O O4 ORO . . . D 4 13.749 -13.674 4.292 1 55.75 ? O4 ORO 1003 A 1 
HETATM 7 C C5 ORO . . . D 4 13.219 -12.836 6.38 1 60.1 ? C5 ORO 1003 A 1 
HETATM 8 C C6 ORO . . . D 4 13.235 -13.103 7.76 1 63.32 ? C6 ORO 1003 A 1 
HETATM 9 C C7 ORO . . . D 4 12.664 -12.129 8.722 1 66.35 ? C7 ORO 1003 A 1 
HETATM 10 O O71 ORO . . . D 4 12.758 -10.9 8.512 1 69.89 ? O71 ORO 1003 A 1 
HETATM 11 O O72 ORO . . . D 4 12.054 -12.636 9.698 1 65.94 ? O72 ORO 1003 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           11 
#