data_3O8I # _model_server_result.job_id hAFaUP5hYgPx1PfILvnILw _model_server_result.datetime_utc '2024-11-27 04:12:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":232}' # _entry.id 3O8I # _exptl.entry_id 3O8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 162.184 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6,6-dihydroxy-1-methoxyhexan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O8I _cell.length_a 83.31 _cell.length_b 114.86 _cell.length_c 64.93 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C THR 4 B THR 258 1_555 B N SEP 5 B SEP 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.362 ? covale ? covale2 B C SEP 5 B SEP 259 1_555 B N THR 6 B THR 260 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.326 ? covale ? covale3 B C SEP 5 B SEP 259 1_555 B N THR 6 B THR 260 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.332 ? # _chem_comp.formula 'C7 H14 O4' _chem_comp.formula_weight 162.184 _chem_comp.id M1T _chem_comp.mon_nstd_flag . _chem_comp.name 6,6-dihydroxy-1-methoxyhexan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA OAI M1T sing 218 n n OAB CAJ M1T doub 219 n n OAC CAK M1T sing 220 n n OAD CAK M1T sing 221 n n CAE CAF M1T sing 222 n n CAE CAG M1T sing 223 n n CAF CAJ M1T sing 224 n n CAG CAK M1T sing 225 n n CAH OAI M1T sing 226 n n CAH CAJ M1T sing 227 n n CAA HAA M1T sing 228 n n CAA HAAA M1T sing 229 n n CAA HAAB M1T sing 230 n n OAC HOAC M1T sing 231 n n OAD HOAD M1T sing 232 n n CAE HAE M1T sing 233 n n CAE HAEA M1T sing 234 n n CAF HAF M1T sing 235 n n CAF HAFA M1T sing 236 n n CAG HAG M1T sing 237 n n CAG HAGA M1T sing 238 n n CAH HAH M1T sing 239 n n CAH HAHA M1T sing 240 n n CAK HAK M1T sing 241 n n # _atom_sites.entry_id 3O8I _atom_sites.fract_transf_matrix[1][1] 0.012003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 M1T A 1 232 1 M1T M1T . D 4 HOH A 1 233 1 HOH HOH . D 4 HOH A 2 234 2 HOH HOH . D 4 HOH A 3 235 3 HOH HOH . D 4 HOH A 4 236 4 HOH HOH . D 4 HOH A 5 237 5 HOH HOH . D 4 HOH A 6 238 6 HOH HOH . D 4 HOH A 7 239 7 HOH HOH . D 4 HOH A 8 240 8 HOH HOH . D 4 HOH A 9 241 9 HOH HOH . D 4 HOH A 10 242 10 HOH HOH . D 4 HOH A 11 243 11 HOH HOH . D 4 HOH A 12 244 12 HOH HOH . D 4 HOH A 13 245 13 HOH HOH . D 4 HOH A 14 246 15 HOH HOH . D 4 HOH A 15 247 16 HOH HOH . D 4 HOH A 16 248 17 HOH HOH . D 4 HOH A 17 249 18 HOH HOH . D 4 HOH A 18 250 19 HOH HOH . D 4 HOH A 19 251 20 HOH HOH . D 4 HOH A 20 252 21 HOH HOH . D 4 HOH A 21 253 22 HOH HOH . D 4 HOH A 22 254 23 HOH HOH . D 4 HOH A 23 255 24 HOH HOH . D 4 HOH A 24 256 25 HOH HOH . D 4 HOH A 25 257 26 HOH HOH . D 4 HOH A 26 258 27 HOH HOH . D 4 HOH A 27 259 28 HOH HOH . D 4 HOH A 28 260 29 HOH HOH . D 4 HOH A 29 261 30 HOH HOH . D 4 HOH A 30 262 31 HOH HOH . D 4 HOH A 31 263 32 HOH HOH . D 4 HOH A 32 264 33 HOH HOH . D 4 HOH A 33 265 34 HOH HOH . D 4 HOH A 34 266 35 HOH HOH . D 4 HOH A 35 267 36 HOH HOH . D 4 HOH A 36 268 37 HOH HOH . D 4 HOH A 37 269 38 HOH HOH . D 4 HOH A 38 270 39 HOH HOH . D 4 HOH A 39 271 40 HOH HOH . D 4 HOH A 40 272 41 HOH HOH . D 4 HOH A 41 273 42 HOH HOH . D 4 HOH A 42 274 43 HOH HOH . D 4 HOH A 43 275 44 HOH HOH . D 4 HOH A 44 276 45 HOH HOH . D 4 HOH A 45 277 46 HOH HOH . D 4 HOH A 46 278 47 HOH HOH . D 4 HOH A 47 279 48 HOH HOH . D 4 HOH A 48 280 49 HOH HOH . D 4 HOH A 49 281 50 HOH HOH . D 4 HOH A 50 282 51 HOH HOH . D 4 HOH A 51 283 52 HOH HOH . D 4 HOH A 52 284 53 HOH HOH . D 4 HOH A 53 285 54 HOH HOH . D 4 HOH A 54 286 55 HOH HOH . D 4 HOH A 55 287 56 HOH HOH . D 4 HOH A 56 288 57 HOH HOH . D 4 HOH A 57 289 58 HOH HOH . D 4 HOH A 58 290 59 HOH HOH . D 4 HOH A 59 291 60 HOH HOH . D 4 HOH A 60 292 61 HOH HOH . D 4 HOH A 61 293 62 HOH HOH . D 4 HOH A 62 294 63 HOH HOH . D 4 HOH A 63 295 64 HOH HOH . D 4 HOH A 64 296 65 HOH HOH . D 4 HOH A 65 297 66 HOH HOH . D 4 HOH A 66 298 67 HOH HOH . D 4 HOH A 67 299 68 HOH HOH . D 4 HOH A 68 300 69 HOH HOH . D 4 HOH A 69 301 70 HOH HOH . D 4 HOH A 70 302 71 HOH HOH . D 4 HOH A 71 303 72 HOH HOH . D 4 HOH A 72 304 73 HOH HOH . D 4 HOH A 73 305 74 HOH HOH . D 4 HOH A 74 306 75 HOH HOH . D 4 HOH A 75 307 76 HOH HOH . D 4 HOH A 76 308 77 HOH HOH . D 4 HOH A 77 309 78 HOH HOH . D 4 HOH A 78 310 79 HOH HOH . D 4 HOH A 79 311 80 HOH HOH . D 4 HOH A 80 312 81 HOH HOH . D 4 HOH A 81 313 82 HOH HOH . D 4 HOH A 82 314 83 HOH HOH . D 4 HOH A 83 315 84 HOH HOH . D 4 HOH A 84 316 85 HOH HOH . D 4 HOH A 85 317 86 HOH HOH . D 4 HOH A 86 318 87 HOH HOH . D 4 HOH A 87 319 88 HOH HOH . D 4 HOH A 88 320 89 HOH HOH . D 4 HOH A 89 321 90 HOH HOH . D 4 HOH A 90 322 91 HOH HOH . D 4 HOH A 91 323 92 HOH HOH . D 4 HOH A 92 324 93 HOH HOH . D 4 HOH A 93 325 94 HOH HOH . D 4 HOH A 94 326 95 HOH HOH . D 4 HOH A 95 327 96 HOH HOH . D 4 HOH A 96 328 97 HOH HOH . D 4 HOH A 97 329 98 HOH HOH . D 4 HOH A 98 330 99 HOH HOH . D 4 HOH A 99 331 101 HOH HOH . D 4 HOH A 100 332 102 HOH HOH . D 4 HOH A 101 333 103 HOH HOH . D 4 HOH A 102 334 104 HOH HOH . D 4 HOH A 103 335 105 HOH HOH . D 4 HOH A 104 336 106 HOH HOH . D 4 HOH A 105 337 107 HOH HOH . D 4 HOH A 106 338 108 HOH HOH . D 4 HOH A 107 339 109 HOH HOH . D 4 HOH A 108 340 110 HOH HOH . D 4 HOH A 109 341 112 HOH HOH . D 4 HOH A 110 342 113 HOH HOH . D 4 HOH A 111 343 114 HOH HOH . D 4 HOH A 112 344 115 HOH HOH . D 4 HOH A 113 345 116 HOH HOH . D 4 HOH A 114 346 117 HOH HOH . D 4 HOH A 115 347 119 HOH HOH . D 4 HOH A 116 348 120 HOH HOH . D 4 HOH A 117 349 121 HOH HOH . D 4 HOH A 118 350 122 HOH HOH . D 4 HOH A 119 351 123 HOH HOH . D 4 HOH A 120 352 124 HOH HOH . D 4 HOH A 121 353 125 HOH HOH . D 4 HOH A 122 354 126 HOH HOH . D 4 HOH A 123 355 127 HOH HOH . D 4 HOH A 124 356 128 HOH HOH . D 4 HOH A 125 357 129 HOH HOH . D 4 HOH A 126 358 130 HOH HOH . D 4 HOH A 127 359 132 HOH HOH . D 4 HOH A 128 360 133 HOH HOH . D 4 HOH A 129 361 135 HOH HOH . D 4 HOH A 130 362 136 HOH HOH . D 4 HOH A 131 363 137 HOH HOH . D 4 HOH A 132 364 138 HOH HOH . D 4 HOH A 133 365 141 HOH HOH . D 4 HOH A 134 366 142 HOH HOH . D 4 HOH A 135 367 143 HOH HOH . D 4 HOH A 136 368 144 HOH HOH . D 4 HOH A 137 369 146 HOH HOH . D 4 HOH A 138 370 147 HOH HOH . D 4 HOH A 139 371 148 HOH HOH . D 4 HOH A 140 372 149 HOH HOH . D 4 HOH A 141 373 150 HOH HOH . D 4 HOH A 142 374 151 HOH HOH . D 4 HOH A 143 375 152 HOH HOH . D 4 HOH A 144 376 153 HOH HOH . D 4 HOH A 145 377 154 HOH HOH . D 4 HOH A 146 378 155 HOH HOH . D 4 HOH A 147 379 156 HOH HOH . D 4 HOH A 148 380 157 HOH HOH . D 4 HOH A 149 381 158 HOH HOH . D 4 HOH A 150 382 160 HOH HOH . D 4 HOH A 151 383 161 HOH HOH . D 4 HOH A 152 384 162 HOH HOH . D 4 HOH A 153 385 140 HOH HOH . E 4 HOH B 1 14 14 HOH HOH . E 4 HOH B 2 100 100 HOH HOH . E 4 HOH B 3 111 111 HOH HOH . E 4 HOH B 4 118 118 HOH HOH . E 4 HOH B 5 131 131 HOH HOH . E 4 HOH B 6 134 134 HOH HOH . E 4 HOH B 7 139 139 HOH HOH . E 4 HOH B 8 145 145 HOH HOH . E 4 HOH B 9 159 159 HOH HOH . E 4 HOH B 10 163 163 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA M1T . . . C 3 -23.636 -22.012 4.348 1 33.8 ? CAA M1T 232 A 1 HETATM 2 O OAB M1T . . . C 3 -19.566 -21.243 4.005 1 33.56 ? OAB M1T 232 A 1 HETATM 3 O OAC M1T . . . C 3 -14.97 -19.556 2.086 1 43.76 ? OAC M1T 232 A 1 HETATM 4 O OAD M1T . . . C 3 -15.597 -21.246 0.612 1 45.88 ? OAD M1T 232 A 1 HETATM 5 C CAE M1T . . . C 3 -18.317 -21.068 1.644 1 41.1 ? CAE M1T 232 A 1 HETATM 6 C CAF M1T . . . C 3 -19.697 -20.485 1.72 1 37.26 ? CAF M1T 232 A 1 HETATM 7 C CAG M1T . . . C 3 -17.309 -19.977 1.848 1 41.72 ? CAG M1T 232 A 1 HETATM 8 C CAH M1T . . . C 3 -21.851 -20.993 3.049 1 34.94 ? CAH M1T 232 A 1 HETATM 9 O OAI M1T . . . C 3 -22.57 -20.951 4.292 1 36.35 ? OAI M1T 232 A 1 HETATM 10 C CAJ M1T . . . C 3 -20.299 -20.947 3.04 1 36.72 ? CAJ M1T 232 A 1 HETATM 11 C CAK M1T . . . C 3 -15.909 -20.607 1.863 1 42.87 ? CAK M1T 232 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #