data_3O8O # _model_server_result.job_id 5D3S3jvovJTrxgbypovSkQ _model_server_result.datetime_utc '2025-02-05 19:04:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o8o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":5}' # _entry.id 3O8O # _exptl.entry_id 3O8O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 4 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O8O _cell.length_a 180.046 _cell.length_b 186.205 _cell.length_c 236.507 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O8O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P 1 1 E,F,G,H,Q,R,S,T,U,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 L N N ? 4 N N N ? 4 P N N ? 4 R N N ? 4 T N N ? 4 V N N ? 4 X N N # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FDP _chem_comp.mon_nstd_flag n _chem_comp.name 2,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms FRUCTOSE-2,6-DIPHOSPHATE;2,6-di-O-phosphono-beta-D-fructose;2,6-di-O-phosphono-D-fructose;2,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FDP doub 112 n n P1 O2P FDP sing 113 n n P1 O3P FDP sing 114 n n P1 O2 FDP sing 115 n n O2P HOP2 FDP sing 116 n n O3P HOP3 FDP sing 117 n n O1 C1 FDP sing 118 n n O1 HO1 FDP sing 119 n n C1 C2 FDP sing 120 n n C1 H11 FDP sing 121 n n C1 H12 FDP sing 122 n n C2 O2 FDP sing 123 n n C2 C3 FDP sing 124 n n C2 O5 FDP sing 125 n n C3 O3 FDP sing 126 n n C3 C4 FDP sing 127 n n C3 H3 FDP sing 128 n n O3 HO3 FDP sing 129 n n C4 O4 FDP sing 130 n n C4 C5 FDP sing 131 n n C4 H4 FDP sing 132 n n O4 HO4 FDP sing 133 n n C5 O5 FDP sing 134 n n C5 C6 FDP sing 135 n n C5 H5 FDP sing 136 n n C6 O6 FDP sing 137 n n C6 H61 FDP sing 138 n n C6 H62 FDP sing 139 n n O6 P2 FDP sing 140 n n P2 O4P FDP doub 141 n n P2 O5P FDP sing 142 n n P2 O6P FDP sing 143 n n O5P HOP5 FDP sing 144 n n O6P HOP6 FDP sing 145 n n # _pdbx_chem_comp_identifier.comp_id FDP _pdbx_chem_comp_identifier.identifier b-D-Fruf2PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3O8O _atom_sites.fract_transf_matrix[1][1] 0.005554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00537 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004228 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 3 F6P A 1 988 988 F6P F6P . J 4 FDP A 1 1 1 FDP FDP . K 3 F6P B 1 980 980 F6P F6P . L 4 FDP B 1 2 2 FDP FDP . M 3 F6P C 1 988 988 F6P F6P . N 4 FDP C 1 3 3 FDP FDP . O 3 F6P D 1 982 982 F6P F6P . P 4 FDP D 1 4 4 FDP FDP . Q 3 F6P E 1 988 988 F6P F6P . R 4 FDP E 1 5 5 FDP FDP . S 3 F6P F 1 984 984 F6P F6P . T 4 FDP F 1 6 6 FDP FDP . U 3 F6P G 1 988 988 F6P F6P . V 4 FDP G 1 7 7 FDP FDP . W 3 F6P H 1 986 986 F6P F6P . X 4 FDP H 1 8 8 FDP FDP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FDP . . . R 4 -9.5 2.234 135.391 1 71.11 ? P1 FDP 5 E 1 HETATM 2 O O1P FDP . . . R 4 -10.849 2.305 135.993 1 71.17 ? O1P FDP 5 E 1 HETATM 3 O O2P FDP . . . R 4 -8.351 2.797 136.368 1 70.44 ? O2P FDP 5 E 1 HETATM 4 O O3P FDP . . . R 4 -9.402 3.158 134.078 1 70.56 ? O3P FDP 5 E 1 HETATM 5 O O1 FDP . . . R 4 -8.54 -1.134 138.076 1 66.87 ? O1 FDP 5 E 1 HETATM 6 C C1 FDP . . . R 4 -8.606 0.027 137.242 1 69.83 ? C1 FDP 5 E 1 HETATM 7 C C2 FDP . . . R 4 -8.973 -0.384 135.815 1 70.44 ? C2 FDP 5 E 1 HETATM 8 O O2 FDP . . . R 4 -9.059 0.749 134.939 1 70.96 ? O2 FDP 5 E 1 HETATM 9 C C3 FDP . . . R 4 -10.259 -1.221 135.809 1 71.18 ? C3 FDP 5 E 1 HETATM 10 O O3 FDP . . . R 4 -11.393 -0.412 135.487 1 71.1 ? O3 FDP 5 E 1 HETATM 11 C C4 FDP . . . R 4 -9.972 -2.2 134.673 1 70.53 ? C4 FDP 5 E 1 HETATM 12 O O4 FDP . . . R 4 -10.787 -3.365 134.837 1 69.72 ? O4 FDP 5 E 1 HETATM 13 C C5 FDP . . . R 4 -8.521 -2.525 135.014 1 70.81 ? C5 FDP 5 E 1 HETATM 14 O O5 FDP . . . R 4 -7.941 -1.244 135.306 1 70.64 ? O5 FDP 5 E 1 HETATM 15 C C6 FDP . . . R 4 -7.789 -3.274 133.898 1 71.95 ? C6 FDP 5 E 1 HETATM 16 O O6 FDP . . . R 4 -7.81 -2.548 132.666 1 73.48 ? O6 FDP 5 E 1 HETATM 17 P P2 FDP . . . R 4 -7.081 -3.145 131.359 1 74.79 ? P2 FDP 5 E 1 HETATM 18 O O4P FDP . . . R 4 -6.284 -2.136 130.626 1 73.22 ? O4P FDP 5 E 1 HETATM 19 O O5P FDP . . . R 4 -6.167 -4.377 131.846 1 73.36 ? O5P FDP 5 E 1 HETATM 20 O O6P FDP . . . R 4 -8.282 -3.758 130.477 1 74.97 ? O6P FDP 5 E 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 70 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #