data_3O96 # _model_server_result.job_id PkKcOUzGymC2b6iQQHFpag _model_server_result.datetime_utc '2024-11-04 23:06:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o96 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":444}' # _entry.id 3O96 # _exptl.entry_id 3O96 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 551.64 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-(1-(4-(7-phenyl-1H-imidazo[4,5-g]quinoxalin-6-yl)benzyl)piperidin-4-yl)-1H-benzo[d]imidazol-2(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.6 _cell.angle_gamma 90 _cell.entry_id 3O96 _cell.length_a 49.31 _cell.length_b 69.94 _cell.length_c 61.85 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O96 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 63 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 60 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 80 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 77 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.946 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C34 H29 N7 O' _chem_comp.formula_weight 551.64 _chem_comp.id IQO _chem_comp.mon_nstd_flag . _chem_comp.name 1-(1-(4-(7-phenyl-1H-imidazo[4,5-g]quinoxalin-6-yl)benzyl)piperidin-4-yl)-1H-benzo[d]imidazol-2(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-{1-[4-(6-phenyl-1H-imidazo[4,5-g]quinoxalin-7-yl)benzyl]piperidin-4-yl}-1,3-dihydro-2H-benzimidazol-2-one # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C3 IQO doub 173 n y C4 N5 IQO sing 174 n n C4 C9 IQO sing 175 n y C6 C7 IQO doub 176 n y C6 C3 IQO sing 177 n y C7 C8 IQO sing 178 n y C8 C9 IQO doub 179 n y C13 N5 IQO sing 180 n n C13 C12 IQO sing 181 n n C13 C14 IQO sing 182 n n C15 C14 IQO sing 183 n n C15 N42 IQO sing 184 n n C17 C22 IQO doub 185 n y C17 C16 IQO sing 186 n n C17 C18 IQO sing 187 n y C20 C21 IQO doub 188 n y C20 C19 IQO sing 189 n y C20 C25 IQO sing 190 n y C21 C22 IQO sing 191 n y C24 N23 IQO doub 192 n y C24 C25 IQO sing 193 n y C24 C36 IQO sing 194 n y C28 C27 IQO doub 195 n y C28 C29 IQO sing 196 n y C1 N2 IQO sing 197 n n C1 N5 IQO sing 198 n n C1 O10 IQO doub 199 n n N2 C3 IQO sing 200 n n C11 C12 IQO sing 201 n n C11 N42 IQO sing 202 n n C16 N42 IQO sing 203 n n C18 C19 IQO doub 204 n y N23 C32 IQO sing 205 n y C25 N26 IQO doub 206 n y N26 C27 IQO sing 207 n y C27 C32 IQO sing 208 n y C29 C30 IQO doub 209 n y C29 N34 IQO sing 210 n y C30 C31 IQO sing 211 n y C30 N35 IQO sing 212 n y C31 C32 IQO doub 213 n y C33 N34 IQO sing 214 n y C33 N35 IQO doub 215 n y C36 C37 IQO doub 216 n y C36 C41 IQO sing 217 n y C37 C38 IQO sing 218 n y C38 C39 IQO doub 219 n y C39 C40 IQO sing 220 n y C40 C41 IQO doub 221 n y C6 H6 IQO sing 222 n n C7 H7 IQO sing 223 n n C8 H8 IQO sing 224 n n C13 H13 IQO sing 225 n n C15 H15 IQO sing 226 n n C15 H15A IQO sing 227 n n C21 H21 IQO sing 228 n n C22 H22 IQO sing 229 n n C28 H28 IQO sing 230 n n N2 HN2 IQO sing 231 n n C9 H9 IQO sing 232 n n C11 H11 IQO sing 233 n n C11 H11A IQO sing 234 n n C12 H12 IQO sing 235 n n C12 H12A IQO sing 236 n n C14 H14 IQO sing 237 n n C14 H14A IQO sing 238 n n C16 H16 IQO sing 239 n n C16 H16A IQO sing 240 n n C18 H18 IQO sing 241 n n C19 H19 IQO sing 242 n n C31 H31 IQO sing 243 n n C33 H33 IQO sing 244 n n N34 HN34 IQO sing 245 n n C37 H37 IQO sing 246 n n C38 H38 IQO sing 247 n n C39 H39 IQO sing 248 n n C40 H40 IQO sing 249 n n C41 H41 IQO sing 250 n n # _atom_sites.entry_id 3O96 _atom_sites.fract_transf_matrix[1][1] 0.02028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003795 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014298 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IQO A 1 444 1 IQO IQO . C 3 HOH A 1 445 1 HOH HOH . C 3 HOH A 2 446 2 HOH HOH . C 3 HOH A 3 447 3 HOH HOH . C 3 HOH A 4 448 4 HOH HOH . C 3 HOH A 5 449 5 HOH HOH . C 3 HOH A 6 450 6 HOH HOH . C 3 HOH A 7 451 7 HOH HOH . C 3 HOH A 8 452 8 HOH HOH . C 3 HOH A 9 453 9 HOH HOH . C 3 HOH A 10 454 10 HOH HOH . C 3 HOH A 11 455 11 HOH HOH . C 3 HOH A 12 456 12 HOH HOH . C 3 HOH A 13 457 13 HOH HOH . C 3 HOH A 14 458 14 HOH HOH . C 3 HOH A 15 459 15 HOH HOH . C 3 HOH A 16 460 16 HOH HOH . C 3 HOH A 17 461 17 HOH HOH . C 3 HOH A 18 462 18 HOH HOH . C 3 HOH A 19 463 19 HOH HOH . C 3 HOH A 20 464 20 HOH HOH . C 3 HOH A 21 465 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 IQO . . . B 2 11.138 -13.389 15.819 1 49.29 ? C4 IQO 444 A 1 HETATM 2 C C6 IQO . . . B 2 11.985 -15.647 15.802 1 51.27 ? C6 IQO 444 A 1 HETATM 3 C C7 IQO . . . B 2 13.294 -15.187 16.17 1 52 ? C7 IQO 444 A 1 HETATM 4 C C8 IQO . . . B 2 13.513 -13.795 16.362 1 51 ? C8 IQO 444 A 1 HETATM 5 C C13 IQO . . . B 2 9.811 -11.238 15.714 1 41.87 ? C13 IQO 444 A 1 HETATM 6 C C15 IQO . . . B 2 8.611 -9.3 16.77 1 40.37 ? C15 IQO 444 A 1 HETATM 7 C C17 IQO . . . B 2 8.24 -6.278 14.47 1 37.57 ? C17 IQO 444 A 1 HETATM 8 C C20 IQO . . . B 2 7.57 -4.775 12.214 1 39.79 ? C20 IQO 444 A 1 HETATM 9 C C21 IQO . . . B 2 8.797 -4.578 12.875 1 39.87 ? C21 IQO 444 A 1 HETATM 10 C C22 IQO . . . B 2 9.117 -5.321 13.985 1 37.75 ? C22 IQO 444 A 1 HETATM 11 C C24 IQO . . . B 2 7.168 -2.495 11.105 1 39.01 ? C24 IQO 444 A 1 HETATM 12 C C28 IQO . . . B 2 6.54 -4.574 7.548 1 43.34 ? C28 IQO 444 A 1 HETATM 13 C C1 IQO . . . B 2 8.977 -13.648 15.264 1 48.6 ? C1 IQO 444 A 1 HETATM 14 N N2 IQO . . . B 2 9.583 -14.9 15.286 1 49.76 ? N2 IQO 444 A 1 HETATM 15 C C3 IQO . . . B 2 10.927 -14.695 15.637 1 50.03 ? C3 IQO 444 A 1 HETATM 16 N N5 IQO . . . B 2 9.949 -12.698 15.598 1 47.72 ? N5 IQO 444 A 1 HETATM 17 C C9 IQO . . . B 2 12.427 -12.885 16.187 1 49.28 ? C9 IQO 444 A 1 HETATM 18 O O10 IQO . . . B 2 7.793 -13.417 14.999 1 48.95 ? O10 IQO 444 A 1 HETATM 19 C C11 IQO . . . B 2 9.793 -8.945 14.58 1 39.21 ? C11 IQO 444 A 1 HETATM 20 C C12 IQO . . . B 2 9.869 -10.485 14.377 1 40.52 ? C12 IQO 444 A 1 HETATM 21 C C14 IQO . . . B 2 8.62 -10.811 16.553 1 39.97 ? C14 IQO 444 A 1 HETATM 22 C C16 IQO . . . B 2 8.605 -7.077 15.711 1 38.32 ? C16 IQO 444 A 1 HETATM 23 C C18 IQO . . . B 2 7 -6.496 13.818 1 38.23 ? C18 IQO 444 A 1 HETATM 24 C C19 IQO . . . B 2 6.67 -5.742 12.69 1 38.83 ? C19 IQO 444 A 1 HETATM 25 N N23 IQO . . . B 2 6.881 -1.803 9.976 1 42.14 ? N23 IQO 444 A 1 HETATM 26 C C25 IQO . . . B 2 7.25 -3.993 11.054 1 39.93 ? C25 IQO 444 A 1 HETATM 27 N N26 IQO . . . B 2 7.038 -4.636 9.883 1 41.83 ? N26 IQO 444 A 1 HETATM 28 C C27 IQO . . . B 2 6.756 -3.906 8.775 1 41.41 ? C27 IQO 444 A 1 HETATM 29 C C29 IQO . . . B 2 6.256 -3.823 6.399 1 44.13 ? C29 IQO 444 A 1 HETATM 30 C C30 IQO . . . B 2 6.179 -2.476 6.437 1 43.33 ? C30 IQO 444 A 1 HETATM 31 C C31 IQO . . . B 2 6.387 -1.772 7.646 1 42.71 ? C31 IQO 444 A 1 HETATM 32 C C32 IQO . . . B 2 6.678 -2.487 8.821 1 41.48 ? C32 IQO 444 A 1 HETATM 33 C C33 IQO . . . B 2 5.801 -3.028 4.438 1 44.84 ? C33 IQO 444 A 1 HETATM 34 N N34 IQO . . . B 2 6.008 -4.185 5.089 1 43.45 ? N34 IQO 444 A 1 HETATM 35 N N35 IQO . . . B 2 5.889 -1.926 5.195 1 43.35 ? N35 IQO 444 A 1 HETATM 36 C C36 IQO . . . B 2 7.406 -1.727 12.367 1 35.42 ? C36 IQO 444 A 1 HETATM 37 C C37 IQO . . . B 2 8.342 -0.614 12.366 1 30.98 ? C37 IQO 444 A 1 HETATM 38 C C38 IQO . . . B 2 8.575 0.124 13.557 1 28.95 ? C38 IQO 444 A 1 HETATM 39 C C39 IQO . . . B 2 7.892 -0.223 14.759 1 31.15 ? C39 IQO 444 A 1 HETATM 40 C C40 IQO . . . B 2 6.958 -1.328 14.772 1 31.96 ? C40 IQO 444 A 1 HETATM 41 C C41 IQO . . . B 2 6.716 -2.074 13.584 1 32.11 ? C41 IQO 444 A 1 HETATM 42 N N42 IQO . . . B 2 8.661 -8.536 15.481 1 39.34 ? N42 IQO 444 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 42 #