data_3O98 # _model_server_result.job_id PdW3LzOlV45tL9wiuj_Lig _model_server_result.datetime_utc '2024-11-05 00:42:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":6000}' # _entry.id 3O98 # _exptl.entry_id 3O98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 70.81 _cell.angle_beta 74.37 _cell.angle_gamma 78.64 _cell.entry_id 3O98 _cell.length_a 60.38 _cell.length_b 76.2 _cell.length_c 84.22 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 H N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 318 A ASP 318 1_555 F MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 A OE2 GLU 330 A GLU 330 1_555 E MG MG . A MG 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.906 ? metalc ? metalc3 A OE1 GLU 330 A GLU 330 1_555 E MG MG . A MG 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? metalc ? metalc4 A OE2 GLU 330 A GLU 330 1_555 F MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc5 A OD1 ASN 332 A ASN 332 1_555 E MG MG . A MG 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? metalc ? metalc6 D O2B ADP . A ADP 3001 1_555 E MG MG . A MG 4000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc7 D O3B ADP . A ADP 3001 1_555 F MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc8 D O2A ADP . A ADP 3001 1_555 F MG MG . A MG 5000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? metalc ? metalc9 E MG MG . A MG 4000 1_555 J O HOH . A HOH 4001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.955 ? metalc ? metalc10 E MG MG . A MG 4000 1_555 J O HOH . A HOH 4002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc11 F MG MG . A MG 5000 1_555 J O HOH . A HOH 5001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc12 F MG MG . A MG 5000 1_555 J O HOH . A HOH 5002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? metalc ? metalc13 B OD2 ASP 318 B ASP 318 1_555 I MG MG . B MG 7000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc14 B OE2 GLU 330 B GLU 330 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc15 B OE1 GLU 330 B GLU 330 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc16 B OE2 GLU 330 B GLU 330 1_555 I MG MG . B MG 7000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.938 ? metalc ? metalc17 B OD1 ASN 332 B ASN 332 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc18 G O2B ADP . B ADP 3002 1_555 H MG MG . B MG 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc19 G O2A ADP . B ADP 3002 1_555 I MG MG . B MG 7000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc20 G O3B ADP . B ADP 3002 1_555 I MG MG . B MG 7000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc21 H MG MG . B MG 6000 1_555 K O HOH . B HOH 6001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc22 H MG MG . B MG 6000 1_555 K O HOH . B HOH 6002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc23 I MG MG . B MG 7000 1_555 K O HOH . B HOH 7001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? metalc ? metalc24 I MG MG . B MG 7000 1_555 K O HOH . B HOH 7002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3O98 _atom_sites.fract_transf_matrix[1][1] 0.016562 _atom_sites.fract_transf_matrix[1][2] -0.003327 _atom_sites.fract_transf_matrix[1][3] -0.003829 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013386 _atom_sites.fract_transf_matrix[2][3] -0.004086 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012891 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TS5 A 1 620 620 TS5 TS5 . D 3 ADP A 1 3001 3001 ADP ADP . E 4 MG A 1 4000 4000 MG MG . F 4 MG A 1 5000 5000 MG MG . G 3 ADP B 1 3002 3002 ADP ADP . H 4 MG B 1 6000 6000 MG MG . I 4 MG B 1 7000 7000 MG MG . J 5 HOH A 1 4001 4001 HOH HOH . J 5 HOH A 2 4002 4002 HOH HOH . J 5 HOH A 3 5001 5001 HOH HOH . J 5 HOH A 4 5002 5002 HOH HOH . J 5 HOH A 5 8002 8002 HOH HOH . J 5 HOH A 6 8003 8003 HOH HOH . J 5 HOH A 7 8013 8013 HOH HOH . J 5 HOH A 8 8014 8014 HOH HOH . J 5 HOH A 9 8015 8015 HOH HOH . J 5 HOH A 10 8016 8016 HOH HOH . J 5 HOH A 11 8017 8017 HOH HOH . J 5 HOH A 12 8021 8021 HOH HOH . J 5 HOH A 13 8022 8022 HOH HOH . J 5 HOH A 14 8023 8023 HOH HOH . J 5 HOH A 15 8024 8024 HOH HOH . J 5 HOH A 16 8025 8025 HOH HOH . J 5 HOH A 17 8026 8026 HOH HOH . J 5 HOH A 18 8027 8027 HOH HOH . J 5 HOH A 19 8028 8028 HOH HOH . J 5 HOH A 20 8029 8029 HOH HOH . J 5 HOH A 21 8030 8030 HOH HOH . J 5 HOH A 22 8043 8043 HOH HOH . J 5 HOH A 23 8044 8044 HOH HOH . J 5 HOH A 24 8045 8045 HOH HOH . J 5 HOH A 25 8046 8046 HOH HOH . J 5 HOH A 26 8047 8047 HOH HOH . J 5 HOH A 27 8048 8048 HOH HOH . J 5 HOH A 28 8049 8049 HOH HOH . J 5 HOH A 29 8053 8053 HOH HOH . J 5 HOH A 30 8054 8054 HOH HOH . J 5 HOH A 31 8055 8055 HOH HOH . J 5 HOH A 32 8057 8057 HOH HOH . J 5 HOH A 33 8058 8058 HOH HOH . J 5 HOH A 34 8059 8059 HOH HOH . J 5 HOH A 35 8060 8060 HOH HOH . J 5 HOH A 36 8061 8061 HOH HOH . J 5 HOH A 37 8062 8062 HOH HOH . J 5 HOH A 38 8063 8063 HOH HOH . J 5 HOH A 39 8064 8064 HOH HOH . J 5 HOH A 40 8065 8065 HOH HOH . J 5 HOH A 41 8066 8066 HOH HOH . J 5 HOH A 42 8067 8067 HOH HOH . J 5 HOH A 43 8068 8068 HOH HOH . J 5 HOH A 44 8069 8069 HOH HOH . J 5 HOH A 45 8070 8070 HOH HOH . J 5 HOH A 46 8071 8071 HOH HOH . J 5 HOH A 47 8072 8072 HOH HOH . J 5 HOH A 48 8073 8073 HOH HOH . J 5 HOH A 49 8074 8074 HOH HOH . J 5 HOH A 50 8076 8076 HOH HOH . J 5 HOH A 51 8077 8077 HOH HOH . J 5 HOH A 52 8078 8078 HOH HOH . J 5 HOH A 53 8096 8096 HOH HOH . J 5 HOH A 54 8097 8097 HOH HOH . J 5 HOH A 55 8100 8100 HOH HOH . J 5 HOH A 56 8102 8102 HOH HOH . J 5 HOH A 57 8103 8103 HOH HOH . J 5 HOH A 58 8105 8105 HOH HOH . J 5 HOH A 59 8106 8106 HOH HOH . J 5 HOH A 60 8107 8107 HOH HOH . J 5 HOH A 61 8108 8108 HOH HOH . J 5 HOH A 62 8110 8110 HOH HOH . J 5 HOH A 63 8111 8111 HOH HOH . J 5 HOH A 64 8112 8112 HOH HOH . J 5 HOH A 65 8114 8114 HOH HOH . J 5 HOH A 66 8115 8115 HOH HOH . J 5 HOH A 67 8116 8116 HOH HOH . J 5 HOH A 68 8117 8117 HOH HOH . J 5 HOH A 69 8124 8124 HOH HOH . J 5 HOH A 70 8127 8127 HOH HOH . J 5 HOH A 71 8128 8128 HOH HOH . J 5 HOH A 72 8129 8129 HOH HOH . J 5 HOH A 73 8130 8130 HOH HOH . J 5 HOH A 74 8131 8131 HOH HOH . J 5 HOH A 75 8133 8133 HOH HOH . J 5 HOH A 76 8135 8135 HOH HOH . J 5 HOH A 77 8136 8136 HOH HOH . J 5 HOH A 78 8137 8137 HOH HOH . J 5 HOH A 79 8138 8138 HOH HOH . J 5 HOH A 80 8139 8139 HOH HOH . J 5 HOH A 81 8140 8140 HOH HOH . J 5 HOH A 82 8142 8142 HOH HOH . J 5 HOH A 83 8166 8166 HOH HOH . J 5 HOH A 84 8167 8167 HOH HOH . J 5 HOH A 85 8168 8168 HOH HOH . J 5 HOH A 86 8175 8175 HOH HOH . J 5 HOH A 87 8176 8176 HOH HOH . J 5 HOH A 88 8177 8177 HOH HOH . J 5 HOH A 89 8178 8178 HOH HOH . J 5 HOH A 90 8180 8180 HOH HOH . J 5 HOH A 91 8181 8181 HOH HOH . J 5 HOH A 92 8182 8182 HOH HOH . J 5 HOH A 93 8183 8183 HOH HOH . J 5 HOH A 94 8184 8184 HOH HOH . J 5 HOH A 95 8185 8185 HOH HOH . J 5 HOH A 96 8186 8186 HOH HOH . J 5 HOH A 97 8187 8187 HOH HOH . J 5 HOH A 98 8188 8188 HOH HOH . J 5 HOH A 99 8189 8189 HOH HOH . J 5 HOH A 100 8190 8190 HOH HOH . J 5 HOH A 101 8191 8191 HOH HOH . J 5 HOH A 102 8192 8192 HOH HOH . J 5 HOH A 103 8193 8193 HOH HOH . J 5 HOH A 104 8194 8194 HOH HOH . J 5 HOH A 105 8195 8195 HOH HOH . J 5 HOH A 106 8202 8202 HOH HOH . J 5 HOH A 107 8207 8207 HOH HOH . J 5 HOH A 108 8208 8208 HOH HOH . J 5 HOH A 109 8209 8209 HOH HOH . J 5 HOH A 110 8210 8210 HOH HOH . J 5 HOH A 111 8211 8211 HOH HOH . J 5 HOH A 112 8213 8213 HOH HOH . J 5 HOH A 113 8214 8214 HOH HOH . K 5 HOH B 1 6001 6001 HOH HOH . K 5 HOH B 2 6002 6002 HOH HOH . K 5 HOH B 3 7001 7001 HOH HOH . K 5 HOH B 4 7002 7002 HOH HOH . K 5 HOH B 5 8006 8006 HOH HOH . K 5 HOH B 6 8007 8007 HOH HOH . K 5 HOH B 7 8009 8009 HOH HOH . K 5 HOH B 8 8010 8010 HOH HOH . K 5 HOH B 9 8011 8011 HOH HOH . K 5 HOH B 10 8012 8012 HOH HOH . K 5 HOH B 11 8018 8018 HOH HOH . K 5 HOH B 12 8019 8019 HOH HOH . K 5 HOH B 13 8020 8020 HOH HOH . K 5 HOH B 14 8031 8031 HOH HOH . K 5 HOH B 15 8032 8032 HOH HOH . K 5 HOH B 16 8033 8033 HOH HOH . K 5 HOH B 17 8034 8034 HOH HOH . K 5 HOH B 18 8035 8035 HOH HOH . K 5 HOH B 19 8036 8036 HOH HOH . K 5 HOH B 20 8037 8037 HOH HOH . K 5 HOH B 21 8039 8039 HOH HOH . K 5 HOH B 22 8040 8040 HOH HOH . K 5 HOH B 23 8041 8041 HOH HOH . K 5 HOH B 24 8042 8042 HOH HOH . K 5 HOH B 25 8050 8050 HOH HOH . K 5 HOH B 26 8051 8051 HOH HOH . K 5 HOH B 27 8052 8052 HOH HOH . K 5 HOH B 28 8075 8075 HOH HOH . K 5 HOH B 29 8079 8079 HOH HOH . K 5 HOH B 30 8080 8080 HOH HOH . K 5 HOH B 31 8081 8081 HOH HOH . K 5 HOH B 32 8082 8082 HOH HOH . K 5 HOH B 33 8083 8083 HOH HOH . K 5 HOH B 34 8085 8085 HOH HOH . K 5 HOH B 35 8087 8087 HOH HOH . K 5 HOH B 36 8088 8088 HOH HOH . K 5 HOH B 37 8089 8089 HOH HOH . K 5 HOH B 38 8090 8090 HOH HOH . K 5 HOH B 39 8091 8091 HOH HOH . K 5 HOH B 40 8092 8092 HOH HOH . K 5 HOH B 41 8093 8093 HOH HOH . K 5 HOH B 42 8094 8094 HOH HOH . K 5 HOH B 43 8095 8095 HOH HOH . K 5 HOH B 44 8101 8101 HOH HOH . K 5 HOH B 45 8104 8104 HOH HOH . K 5 HOH B 46 8118 8118 HOH HOH . K 5 HOH B 47 8119 8119 HOH HOH . K 5 HOH B 48 8120 8120 HOH HOH . K 5 HOH B 49 8121 8121 HOH HOH . K 5 HOH B 50 8122 8122 HOH HOH . K 5 HOH B 51 8123 8123 HOH HOH . K 5 HOH B 52 8125 8125 HOH HOH . K 5 HOH B 53 8126 8126 HOH HOH . K 5 HOH B 54 8143 8143 HOH HOH . K 5 HOH B 55 8144 8144 HOH HOH . K 5 HOH B 56 8145 8145 HOH HOH . K 5 HOH B 57 8148 8148 HOH HOH . K 5 HOH B 58 8149 8149 HOH HOH . K 5 HOH B 59 8150 8150 HOH HOH . K 5 HOH B 60 8151 8151 HOH HOH . K 5 HOH B 61 8152 8152 HOH HOH . K 5 HOH B 62 8153 8153 HOH HOH . K 5 HOH B 63 8155 8155 HOH HOH . K 5 HOH B 64 8156 8156 HOH HOH . K 5 HOH B 65 8157 8157 HOH HOH . K 5 HOH B 66 8158 8158 HOH HOH . K 5 HOH B 67 8159 8159 HOH HOH . K 5 HOH B 68 8160 8160 HOH HOH . K 5 HOH B 69 8161 8161 HOH HOH . K 5 HOH B 70 8162 8162 HOH HOH . K 5 HOH B 71 8163 8163 HOH HOH . K 5 HOH B 72 8164 8164 HOH HOH . K 5 HOH B 73 8165 8165 HOH HOH . K 5 HOH B 74 8169 8169 HOH HOH . K 5 HOH B 75 8170 8170 HOH HOH . K 5 HOH B 76 8171 8171 HOH HOH . K 5 HOH B 77 8172 8172 HOH HOH . K 5 HOH B 78 8196 8196 HOH HOH . K 5 HOH B 79 8197 8197 HOH HOH . K 5 HOH B 80 8199 8199 HOH HOH . K 5 HOH B 81 8200 8200 HOH HOH . K 5 HOH B 82 8203 8203 HOH HOH . K 5 HOH B 83 8205 8205 HOH HOH . K 5 HOH B 84 8206 8206 HOH HOH . K 5 HOH B 85 8215 8215 HOH HOH . K 5 HOH B 86 8216 8216 HOH HOH . K 5 HOH B 87 8217 8217 HOH HOH . K 5 HOH B 88 8218 8218 HOH HOH . K 5 HOH B 89 8219 8219 HOH HOH . K 5 HOH B 90 8220 8220 HOH HOH . K 5 HOH B 91 8221 8221 HOH HOH . K 5 HOH B 92 8222 8222 HOH HOH . K 5 HOH B 93 8223 8223 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 4 _atom_site.Cartn_x 2.549 _atom_site.Cartn_y -16.11 _atom_site.Cartn_z 47.087 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.23 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 6000 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #