data_3O9A # _model_server_result.job_id OWPtEl--9hRt0kc9bWi5uA _model_server_result.datetime_utc '2024-11-30 03:23:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 3O9A # _exptl.entry_id 3O9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 576.701 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl][(2S)-2-methylbutyl]amino}propyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O9A _cell.length_a 50.745 _cell.length_b 57.751 _cell.length_c 61.876 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H40 N2 O8 S' _chem_comp.formula_weight 576.701 _chem_comp.id K14 _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-{[(4-methoxyphenyl)sulfonyl][(2S)-2-methylbutyl]amino}propyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 K14 sing 173 n n O1 C2 K14 sing 174 n n C2 C3 K14 doub 175 n y C2 C7 K14 sing 176 n y C3 C4 K14 sing 177 n y C4 C5 K14 doub 178 n y C5 C6 K14 sing 179 n y C5 S8 K14 sing 180 n n C6 C7 K14 doub 181 n y S8 O9 K14 doub 182 n n S8 O10 K14 doub 183 n n S8 N11 K14 sing 184 n n N11 C12 K14 sing 185 n n N11 C16 K14 sing 186 n n C12 C13 K14 sing 187 n n C13 C14 K14 sing 188 n n C13 C15 K14 sing 189 n n C15 C18 K14 sing 190 n n C16 C17 K14 sing 191 n n C17 O18 K14 sing 192 n n C17 C19 K14 sing 193 n n C19 N20 K14 sing 194 n n C19 C32 K14 sing 195 n n N20 C21 K14 sing 196 n n C21 O22 K14 doub 197 n n C21 O23 K14 sing 198 n n O23 C24 K14 sing 199 n n C24 C25 K14 sing 200 n n C24 C31 K14 sing 201 n n C25 O26 K14 sing 202 n n O26 C27 K14 sing 203 n n C27 O28 K14 sing 204 n n C27 C31 K14 sing 205 n n O28 C29 K14 sing 206 n n C29 C30 K14 sing 207 n n C30 C31 K14 sing 208 n n C32 C38 K14 sing 209 n n C33 C34 K14 doub 210 n y C33 C38 K14 sing 211 n y C34 C35 K14 sing 212 n y C35 C36 K14 doub 213 n y C36 C37 K14 sing 214 n y C37 C38 K14 doub 215 n y C1 H1 K14 sing 216 n n C1 H1A K14 sing 217 n n C1 H1B K14 sing 218 n n C3 H3 K14 sing 219 n n C4 H4 K14 sing 220 n n C6 H6 K14 sing 221 n n C7 H7 K14 sing 222 n n C12 H12 K14 sing 223 n n C12 H12A K14 sing 224 n n C13 H13 K14 sing 225 n n C14 H14 K14 sing 226 n n C14 H14A K14 sing 227 n n C14 H14B K14 sing 228 n n C15 H15 K14 sing 229 n n C15 H15A K14 sing 230 n n C16 H16 K14 sing 231 n n C16 H16A K14 sing 232 n n C17 H17 K14 sing 233 n n C18 H18 K14 sing 234 n n C18 H18A K14 sing 235 n n C18 H18B K14 sing 236 n n O18 HO18 K14 sing 237 n n C19 H19 K14 sing 238 n n N20 HN20 K14 sing 239 n n C24 H24 K14 sing 240 n n C25 H25 K14 sing 241 n n C25 H25A K14 sing 242 n n C27 H27 K14 sing 243 n n C29 H29 K14 sing 244 n n C29 H29A K14 sing 245 n n C30 H30 K14 sing 246 n n C30 H30A K14 sing 247 n n C31 H31 K14 sing 248 n n C32 H32 K14 sing 249 n n C32 H32A K14 sing 250 n n C33 H33 K14 sing 251 n n C34 H34 K14 sing 252 n n C35 H35 K14 sing 253 n n C36 H36 K14 sing 254 n n C37 H37 K14 sing 255 n n # _atom_sites.entry_id 3O9A _atom_sites.fract_transf_matrix[1][1] 0.019706 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016161 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 100 2 PO4 PO4 . D 2 PO4 A 1 101 4 PO4 PO4 . E 3 K14 A 1 200 200 K14 K14 . F 2 PO4 B 1 100 1 PO4 PO4 . G 2 PO4 B 1 101 3 PO4 PO4 . H 4 HOH A 1 102 102 HOH HOH . H 4 HOH A 2 103 103 HOH HOH . H 4 HOH A 3 104 104 HOH HOH . H 4 HOH A 4 105 105 HOH HOH . H 4 HOH A 5 106 106 HOH HOH . H 4 HOH A 6 107 107 HOH HOH . H 4 HOH A 7 108 108 HOH HOH . H 4 HOH A 8 109 109 HOH HOH . H 4 HOH A 9 110 110 HOH HOH . H 4 HOH A 10 111 111 HOH HOH . H 4 HOH A 11 112 112 HOH HOH . H 4 HOH A 12 113 113 HOH HOH . H 4 HOH A 13 114 1 HOH HOH . H 4 HOH A 14 115 2 HOH HOH . H 4 HOH A 15 116 3 HOH HOH . H 4 HOH A 16 117 7 HOH HOH . H 4 HOH A 17 118 8 HOH HOH . H 4 HOH A 18 119 9 HOH HOH . H 4 HOH A 19 120 10 HOH HOH . H 4 HOH A 20 121 12 HOH HOH . H 4 HOH A 21 122 13 HOH HOH . H 4 HOH A 22 123 17 HOH HOH . H 4 HOH A 23 124 18 HOH HOH . H 4 HOH A 24 125 19 HOH HOH . H 4 HOH A 25 126 22 HOH HOH . H 4 HOH A 26 127 23 HOH HOH . H 4 HOH A 27 128 27 HOH HOH . H 4 HOH A 28 129 32 HOH HOH . H 4 HOH A 29 130 34 HOH HOH . H 4 HOH A 30 131 39 HOH HOH . H 4 HOH A 31 132 40 HOH HOH . H 4 HOH A 32 133 41 HOH HOH . H 4 HOH A 33 134 45 HOH HOH . H 4 HOH A 34 135 46 HOH HOH . H 4 HOH A 35 136 47 HOH HOH . H 4 HOH A 36 137 49 HOH HOH . H 4 HOH A 37 138 52 HOH HOH . H 4 HOH A 38 139 53 HOH HOH . H 4 HOH A 39 140 54 HOH HOH . H 4 HOH A 40 141 55 HOH HOH . H 4 HOH A 41 142 69 HOH HOH . H 4 HOH A 42 143 71 HOH HOH . H 4 HOH A 43 144 72 HOH HOH . H 4 HOH A 44 145 73 HOH HOH . H 4 HOH A 45 146 74 HOH HOH . H 4 HOH A 46 147 75 HOH HOH . H 4 HOH A 47 148 76 HOH HOH . H 4 HOH A 48 149 77 HOH HOH . H 4 HOH A 49 150 78 HOH HOH . H 4 HOH A 50 151 79 HOH HOH . H 4 HOH A 51 152 80 HOH HOH . H 4 HOH A 52 153 101 HOH HOH . I 4 HOH B 1 102 4 HOH HOH . I 4 HOH B 2 103 5 HOH HOH . I 4 HOH B 3 104 6 HOH HOH . I 4 HOH B 4 105 11 HOH HOH . I 4 HOH B 5 106 14 HOH HOH . I 4 HOH B 6 107 15 HOH HOH . I 4 HOH B 7 108 16 HOH HOH . I 4 HOH B 8 109 20 HOH HOH . I 4 HOH B 9 110 21 HOH HOH . I 4 HOH B 10 111 24 HOH HOH . I 4 HOH B 11 112 25 HOH HOH . I 4 HOH B 12 113 26 HOH HOH . I 4 HOH B 13 114 28 HOH HOH . I 4 HOH B 14 115 29 HOH HOH . I 4 HOH B 15 116 30 HOH HOH . I 4 HOH B 16 117 31 HOH HOH . I 4 HOH B 17 118 33 HOH HOH . I 4 HOH B 18 119 35 HOH HOH . I 4 HOH B 19 120 36 HOH HOH . I 4 HOH B 20 121 37 HOH HOH . I 4 HOH B 21 122 38 HOH HOH . I 4 HOH B 22 123 42 HOH HOH . I 4 HOH B 23 124 43 HOH HOH . I 4 HOH B 24 125 44 HOH HOH . I 4 HOH B 25 126 48 HOH HOH . I 4 HOH B 26 127 50 HOH HOH . I 4 HOH B 27 128 51 HOH HOH . I 4 HOH B 28 129 56 HOH HOH . I 4 HOH B 29 130 57 HOH HOH . I 4 HOH B 30 131 58 HOH HOH . I 4 HOH B 31 132 59 HOH HOH . I 4 HOH B 32 133 60 HOH HOH . I 4 HOH B 33 134 61 HOH HOH . I 4 HOH B 34 135 62 HOH HOH . I 4 HOH B 35 136 63 HOH HOH . I 4 HOH B 36 137 64 HOH HOH . I 4 HOH B 37 138 65 HOH HOH . I 4 HOH B 38 139 66 HOH HOH . I 4 HOH B 39 140 67 HOH HOH . I 4 HOH B 40 141 68 HOH HOH . I 4 HOH B 41 142 70 HOH HOH . I 4 HOH B 42 143 81 HOH HOH . I 4 HOH B 43 144 82 HOH HOH . I 4 HOH B 44 145 83 HOH HOH . I 4 HOH B 45 146 84 HOH HOH . I 4 HOH B 46 147 85 HOH HOH . I 4 HOH B 47 148 86 HOH HOH . I 4 HOH B 48 149 87 HOH HOH . I 4 HOH B 49 150 88 HOH HOH . I 4 HOH B 50 151 89 HOH HOH . I 4 HOH B 51 152 90 HOH HOH . I 4 HOH B 52 153 91 HOH HOH . I 4 HOH B 53 154 92 HOH HOH . I 4 HOH B 54 155 93 HOH HOH . I 4 HOH B 55 156 94 HOH HOH . I 4 HOH B 56 157 95 HOH HOH . I 4 HOH B 57 158 96 HOH HOH . I 4 HOH B 58 159 97 HOH HOH . I 4 HOH B 59 160 98 HOH HOH . I 4 HOH B 60 161 99 HOH HOH . I 4 HOH B 61 162 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K14 . . . E 3 15.264 36.898 18.862 1 18.62 ? C1 K14 200 A 1 HETATM 2 O O1 K14 . . . E 3 14.913 35.543 18.538 1 19.96 ? O1 K14 200 A 1 HETATM 3 C C2 K14 . . . E 3 15.643 34.794 17.638 1 16.95 ? C2 K14 200 A 1 HETATM 4 C C3 K14 . . . E 3 16.669 35.365 16.874 1 16.89 ? C3 K14 200 A 1 HETATM 5 C C4 K14 . . . E 3 17.401 34.581 15.979 1 15.9 ? C4 K14 200 A 1 HETATM 6 C C5 K14 . . . E 3 17.15 33.223 15.809 1 14.34 ? C5 K14 200 A 1 HETATM 7 C C6 K14 . . . E 3 16.115 32.661 16.571 1 14.3 ? C6 K14 200 A 1 HETATM 8 C C7 K14 . . . E 3 15.378 33.432 17.487 1 15.56 ? C7 K14 200 A 1 HETATM 9 S S8 K14 . . . E 3 18.051 32.334 14.775 1 14.01 ? S8 K14 200 A 1 HETATM 10 O O9 K14 . . . E 3 17.273 31.252 14.266 1 12.36 ? O9 K14 200 A 1 HETATM 11 O O10 K14 . . . E 3 18.569 33.148 13.697 1 14.26 ? O10 K14 200 A 1 HETATM 12 N N11 K14 . . . E 3 19.364 31.737 15.51 1 15.29 ? N11 K14 200 A 1 HETATM 13 C C12 K14 . . . E 3 20.078 32.778 16.295 1 16.64 ? C12 K14 200 A 1 HETATM 14 C C13 K14 . . . E 3 21.58 32.485 16.381 1 17.53 ? C13 K14 200 A 1 HETATM 15 C C14 K14 . . . E 3 22.264 32.392 15.011 1 16.33 ? C14 K14 200 A 1 HETATM 16 C C15 K14 . . . E 3 22.246 33.525 17.285 1 20.01 ? C15 K14 200 A 1 HETATM 17 C C16 K14 . . . E 3 19.091 30.511 16.293 1 12.63 ? C16 K14 200 A 1 HETATM 18 C C17 K14 . . . E 3 19.938 29.364 15.733 1 11.99 ? C17 K14 200 A 1 HETATM 19 C C18 K14 . . . E 3 22.136 34.942 16.785 1 21.82 ? C18 K14 200 A 1 HETATM 20 O O18 K14 . . . E 3 19.884 28.234 16.612 1 11.45 ? O18 K14 200 A 1 HETATM 21 C C19 K14 . . . E 3 19.54 28.913 14.333 1 11.31 ? C19 K14 200 A 1 HETATM 22 N N20 K14 . . . E 3 20.623 28.1 13.851 1 11.51 ? N20 K14 200 A 1 HETATM 23 C C21 K14 . . . E 3 21.474 28.439 12.886 1 12.97 ? C21 K14 200 A 1 HETATM 24 O O22 K14 . . . E 3 21.503 29.472 12.236 1 12.69 ? O22 K14 200 A 1 HETATM 25 O O23 K14 . . . E 3 22.434 27.4 12.639 1 14.52 ? O23 K14 200 A 1 HETATM 26 C C24 K14 . . . E 3 23.284 27.515 11.51 1 15 ? C24 K14 200 A 1 HETATM 27 C C25 K14 . . . E 3 24.609 26.959 11.981 1 16.13 ? C25 K14 200 A 1 HETATM 28 O O26 K14 . . . E 3 24.448 25.539 11.87 1 14.5 ? O26 K14 200 A 1 HETATM 29 C C27 K14 . . . E 3 23.537 25.263 10.802 1 16.58 ? C27 K14 200 A 1 HETATM 30 O O28 K14 . . . E 3 22.509 24.361 11.212 1 16.83 ? O28 K14 200 A 1 HETATM 31 C C29 K14 . . . E 3 21.222 25.002 11.196 1 14.92 ? C29 K14 200 A 1 HETATM 32 C C30 K14 . . . E 3 21.386 26.225 10.307 1 15.54 ? C30 K14 200 A 1 HETATM 33 C C31 K14 . . . E 3 22.866 26.564 10.409 1 14.89 ? C31 K14 200 A 1 HETATM 34 C C32 K14 . . . E 3 18.225 28.122 14.244 1 11.33 ? C32 K14 200 A 1 HETATM 35 C C33 K14 . . . E 3 18.139 26.419 12.377 1 12.07 ? C33 K14 200 A 1 HETATM 36 C C34 K14 . . . E 3 17.943 26.068 11.055 1 12.38 ? C34 K14 200 A 1 HETATM 37 C C35 K14 . . . E 3 17.591 27.029 10.129 1 13.72 ? C35 K14 200 A 1 HETATM 38 C C36 K14 . . . E 3 17.444 28.346 10.523 1 12.9 ? C36 K14 200 A 1 HETATM 39 C C37 K14 . . . E 3 17.628 28.695 11.856 1 12.49 ? C37 K14 200 A 1 HETATM 40 C C38 K14 . . . E 3 17.987 27.739 12.789 1 10.96 ? C38 K14 200 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 40 #