data_3O9B # _model_server_result.job_id WxM5xgr4FQWbHNpIQq_HDw _model_server_result.datetime_utc '2024-11-14 16:26:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o9b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":200}' # _entry.id 3O9B # _exptl.entry_id 3O9B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 576.701 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-({[4-(hydroxymethyl)phenyl]sulfonyl}[(2S)-2-methylbutyl]amino)propyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O9B _cell.length_a 50.672 _cell.length_b 57.921 _cell.length_c 61.746 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O9B _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H40 N2 O8 S' _chem_comp.formula_weight 576.701 _chem_comp.id K2A _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-2-hydroxy-3-({[4-(hydroxymethyl)phenyl]sulfonyl}[(2S)-2-methylbutyl]amino)propyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 K2A sing 192 n n C1 C2 K2A sing 193 n n C2 C3 K2A doub 194 n y C2 C7 K2A sing 195 n y C3 C4 K2A sing 196 n y C4 C5 K2A doub 197 n y C5 C6 K2A sing 198 n y C5 S8 K2A sing 199 n n C6 C7 K2A doub 200 n y S8 O9 K2A doub 201 n n S8 O10 K2A doub 202 n n S8 N11 K2A sing 203 n n N11 C12 K2A sing 204 n n N11 C16 K2A sing 205 n n C12 C13 K2A sing 206 n n C13 C14 K2A sing 207 n n C13 C15 K2A sing 208 n n C15 C18 K2A sing 209 n n C16 C17 K2A sing 210 n n C17 O18 K2A sing 211 n n C17 C19 K2A sing 212 n n C19 N20 K2A sing 213 n n C19 C32 K2A sing 214 n n N20 C21 K2A sing 215 n n C21 O22 K2A doub 216 n n C21 O23 K2A sing 217 n n O23 C24 K2A sing 218 n n C24 C25 K2A sing 219 n n C24 C31 K2A sing 220 n n C25 O26 K2A sing 221 n n O26 C27 K2A sing 222 n n C27 O28 K2A sing 223 n n C27 C31 K2A sing 224 n n O28 C29 K2A sing 225 n n C29 C30 K2A sing 226 n n C30 C31 K2A sing 227 n n C32 C38 K2A sing 228 n n C33 C34 K2A doub 229 n y C33 C38 K2A sing 230 n y C34 C35 K2A sing 231 n y C35 C36 K2A doub 232 n y C36 C37 K2A sing 233 n y C37 C38 K2A doub 234 n y C1 H1 K2A sing 235 n n C1 H1A K2A sing 236 n n O1 HO1 K2A sing 237 n n C3 H3 K2A sing 238 n n C4 H4 K2A sing 239 n n C6 H6 K2A sing 240 n n C7 H7 K2A sing 241 n n C12 H12 K2A sing 242 n n C12 H12A K2A sing 243 n n C13 H13 K2A sing 244 n n C14 H14 K2A sing 245 n n C14 H14A K2A sing 246 n n C14 H14B K2A sing 247 n n C15 H15 K2A sing 248 n n C15 H15A K2A sing 249 n n C16 H16 K2A sing 250 n n C16 H16A K2A sing 251 n n C17 H17 K2A sing 252 n n C18 H18 K2A sing 253 n n C18 H18A K2A sing 254 n n C18 H18B K2A sing 255 n n O18 HO18 K2A sing 256 n n C19 H19 K2A sing 257 n n N20 HN20 K2A sing 258 n n C24 H24 K2A sing 259 n n C25 H25 K2A sing 260 n n C25 H25A K2A sing 261 n n C27 H27 K2A sing 262 n n C29 H29 K2A sing 263 n n C29 H29A K2A sing 264 n n C30 H30 K2A sing 265 n n C30 H30A K2A sing 266 n n C31 H31 K2A sing 267 n n C32 H32 K2A sing 268 n n C32 H32A K2A sing 269 n n C33 H33 K2A sing 270 n n C34 H34 K2A sing 271 n n C35 H35 K2A sing 272 n n C36 H36 K2A sing 273 n n C37 H37 K2A sing 274 n n # _atom_sites.entry_id 3O9B _atom_sites.fract_transf_matrix[1][1] 0.019735 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016195 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 100 1 PO4 PO4 . D 2 PO4 A 1 101 3 PO4 PO4 . E 3 GOL A 1 102 4 GOL GOL . F 4 ACT A 1 103 5 ACT ACT . G 4 ACT A 1 104 6 ACT ACT . H 5 K2A A 1 200 200 K2A K2A . I 2 PO4 B 1 100 2 PO4 PO4 . J 6 HOH A 1 105 2 HOH HOH . J 6 HOH A 2 106 3 HOH HOH . J 6 HOH A 3 107 4 HOH HOH . J 6 HOH A 4 108 5 HOH HOH . J 6 HOH A 5 109 109 HOH HOH . J 6 HOH A 6 110 7 HOH HOH . J 6 HOH A 7 111 8 HOH HOH . J 6 HOH A 8 112 112 HOH HOH . J 6 HOH A 9 113 113 HOH HOH . J 6 HOH A 10 114 114 HOH HOH . J 6 HOH A 11 115 9 HOH HOH . J 6 HOH A 12 116 12 HOH HOH . J 6 HOH A 13 117 15 HOH HOH . J 6 HOH A 14 118 17 HOH HOH . J 6 HOH A 15 119 18 HOH HOH . J 6 HOH A 16 120 21 HOH HOH . J 6 HOH A 17 121 24 HOH HOH . J 6 HOH A 18 122 25 HOH HOH . J 6 HOH A 19 123 123 HOH HOH . J 6 HOH A 20 124 124 HOH HOH . J 6 HOH A 21 125 125 HOH HOH . J 6 HOH A 22 126 126 HOH HOH . J 6 HOH A 23 127 127 HOH HOH . J 6 HOH A 24 128 128 HOH HOH . J 6 HOH A 25 129 27 HOH HOH . J 6 HOH A 26 130 130 HOH HOH . J 6 HOH A 27 131 28 HOH HOH . J 6 HOH A 28 132 29 HOH HOH . J 6 HOH A 29 133 31 HOH HOH . J 6 HOH A 30 134 32 HOH HOH . J 6 HOH A 31 135 33 HOH HOH . J 6 HOH A 32 136 35 HOH HOH . J 6 HOH A 33 137 40 HOH HOH . J 6 HOH A 34 138 42 HOH HOH . J 6 HOH A 35 139 44 HOH HOH . J 6 HOH A 36 140 140 HOH HOH . J 6 HOH A 37 141 45 HOH HOH . J 6 HOH A 38 142 48 HOH HOH . J 6 HOH A 39 143 49 HOH HOH . J 6 HOH A 40 144 55 HOH HOH . J 6 HOH A 41 145 56 HOH HOH . J 6 HOH A 42 146 58 HOH HOH . J 6 HOH A 43 147 59 HOH HOH . J 6 HOH A 44 148 61 HOH HOH . J 6 HOH A 45 149 62 HOH HOH . J 6 HOH A 46 150 150 HOH HOH . J 6 HOH A 47 151 65 HOH HOH . J 6 HOH A 48 152 66 HOH HOH . J 6 HOH A 49 153 68 HOH HOH . J 6 HOH A 50 154 154 HOH HOH . J 6 HOH A 51 155 155 HOH HOH . J 6 HOH A 52 156 74 HOH HOH . J 6 HOH A 53 157 157 HOH HOH . J 6 HOH A 54 158 158 HOH HOH . J 6 HOH A 55 159 159 HOH HOH . J 6 HOH A 56 160 160 HOH HOH . J 6 HOH A 57 161 161 HOH HOH . J 6 HOH A 58 162 162 HOH HOH . J 6 HOH A 59 163 163 HOH HOH . J 6 HOH A 60 164 164 HOH HOH . J 6 HOH A 61 165 165 HOH HOH . J 6 HOH A 62 166 166 HOH HOH . J 6 HOH A 63 167 167 HOH HOH . J 6 HOH A 64 168 168 HOH HOH . J 6 HOH A 65 169 169 HOH HOH . J 6 HOH A 66 170 78 HOH HOH . J 6 HOH A 67 171 79 HOH HOH . J 6 HOH A 68 172 80 HOH HOH . J 6 HOH A 69 173 82 HOH HOH . J 6 HOH A 70 174 83 HOH HOH . J 6 HOH A 71 175 86 HOH HOH . J 6 HOH A 72 176 92 HOH HOH . J 6 HOH A 73 177 93 HOH HOH . J 6 HOH A 74 178 94 HOH HOH . J 6 HOH A 75 179 98 HOH HOH . J 6 HOH A 76 180 99 HOH HOH . J 6 HOH A 77 181 101 HOH HOH . J 6 HOH A 78 182 102 HOH HOH . K 6 HOH B 1 101 1 HOH HOH . K 6 HOH B 2 102 6 HOH HOH . K 6 HOH B 3 103 103 HOH HOH . K 6 HOH B 4 104 104 HOH HOH . K 6 HOH B 5 105 105 HOH HOH . K 6 HOH B 6 106 106 HOH HOH . K 6 HOH B 7 107 107 HOH HOH . K 6 HOH B 8 108 108 HOH HOH . K 6 HOH B 9 109 10 HOH HOH . K 6 HOH B 10 110 110 HOH HOH . K 6 HOH B 11 111 111 HOH HOH . K 6 HOH B 12 112 11 HOH HOH . K 6 HOH B 13 113 13 HOH HOH . K 6 HOH B 14 114 14 HOH HOH . K 6 HOH B 15 115 115 HOH HOH . K 6 HOH B 16 116 116 HOH HOH . K 6 HOH B 17 117 117 HOH HOH . K 6 HOH B 18 118 118 HOH HOH . K 6 HOH B 19 119 119 HOH HOH . K 6 HOH B 20 120 120 HOH HOH . K 6 HOH B 21 121 121 HOH HOH . K 6 HOH B 22 122 122 HOH HOH . K 6 HOH B 23 123 16 HOH HOH . K 6 HOH B 24 124 19 HOH HOH . K 6 HOH B 25 125 20 HOH HOH . K 6 HOH B 26 126 22 HOH HOH . K 6 HOH B 27 127 23 HOH HOH . K 6 HOH B 28 128 26 HOH HOH . K 6 HOH B 29 129 129 HOH HOH . K 6 HOH B 30 130 30 HOH HOH . K 6 HOH B 31 131 131 HOH HOH . K 6 HOH B 32 132 132 HOH HOH . K 6 HOH B 33 133 133 HOH HOH . K 6 HOH B 34 134 134 HOH HOH . K 6 HOH B 35 135 135 HOH HOH . K 6 HOH B 36 136 136 HOH HOH . K 6 HOH B 37 137 137 HOH HOH . K 6 HOH B 38 138 138 HOH HOH . K 6 HOH B 39 139 139 HOH HOH . K 6 HOH B 40 140 34 HOH HOH . K 6 HOH B 41 141 141 HOH HOH . K 6 HOH B 42 142 142 HOH HOH . K 6 HOH B 43 143 143 HOH HOH . K 6 HOH B 44 144 144 HOH HOH . K 6 HOH B 45 145 145 HOH HOH . K 6 HOH B 46 146 146 HOH HOH . K 6 HOH B 47 147 147 HOH HOH . K 6 HOH B 48 148 148 HOH HOH . K 6 HOH B 49 149 149 HOH HOH . K 6 HOH B 50 150 36 HOH HOH . K 6 HOH B 51 151 151 HOH HOH . K 6 HOH B 52 152 152 HOH HOH . K 6 HOH B 53 153 153 HOH HOH . K 6 HOH B 54 154 37 HOH HOH . K 6 HOH B 55 155 38 HOH HOH . K 6 HOH B 56 156 156 HOH HOH . K 6 HOH B 57 157 39 HOH HOH . K 6 HOH B 58 158 41 HOH HOH . K 6 HOH B 59 159 43 HOH HOH . K 6 HOH B 60 160 46 HOH HOH . K 6 HOH B 61 161 47 HOH HOH . K 6 HOH B 62 162 50 HOH HOH . K 6 HOH B 63 163 51 HOH HOH . K 6 HOH B 64 164 52 HOH HOH . K 6 HOH B 65 165 53 HOH HOH . K 6 HOH B 66 166 54 HOH HOH . K 6 HOH B 67 167 57 HOH HOH . K 6 HOH B 68 168 60 HOH HOH . K 6 HOH B 69 169 63 HOH HOH . K 6 HOH B 70 170 64 HOH HOH . K 6 HOH B 71 171 67 HOH HOH . K 6 HOH B 72 172 69 HOH HOH . K 6 HOH B 73 173 70 HOH HOH . K 6 HOH B 74 174 71 HOH HOH . K 6 HOH B 75 175 72 HOH HOH . K 6 HOH B 76 176 73 HOH HOH . K 6 HOH B 77 177 75 HOH HOH . K 6 HOH B 78 178 76 HOH HOH . K 6 HOH B 79 179 77 HOH HOH . K 6 HOH B 80 180 81 HOH HOH . K 6 HOH B 81 181 84 HOH HOH . K 6 HOH B 82 182 85 HOH HOH . K 6 HOH B 83 183 87 HOH HOH . K 6 HOH B 84 184 88 HOH HOH . K 6 HOH B 85 185 89 HOH HOH . K 6 HOH B 86 186 90 HOH HOH . K 6 HOH B 87 187 91 HOH HOH . K 6 HOH B 88 188 95 HOH HOH . K 6 HOH B 89 189 96 HOH HOH . K 6 HOH B 90 190 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K2A . . . H 5 14.438 35.872 18.16 1 12.88 ? C1 K2A 200 A 1 HETATM 2 O O1 K2A . . . H 5 14.878 35.853 19.52 1 14.22 ? O1 K2A 200 A 1 HETATM 3 C C2 K2A . . . H 5 15.34 34.986 17.325 1 10.93 ? C2 K2A 200 A 1 HETATM 4 C C3 K2A . . . H 5 15.173 33.606 17.298 1 11.53 ? C3 K2A 200 A 1 HETATM 5 C C4 K2A . . . H 5 16.02 32.807 16.51 1 11.17 ? C4 K2A 200 A 1 HETATM 6 C C5 K2A . . . H 5 17.048 33.378 15.756 1 9.61 ? C5 K2A 200 A 1 HETATM 7 C C6 K2A . . . H 5 17.202 34.769 15.805 1 10.21 ? C6 K2A 200 A 1 HETATM 8 C C7 K2A . . . H 5 16.358 35.564 16.577 1 10.58 ? C7 K2A 200 A 1 HETATM 9 S S8 K2A . . . H 5 18.059 32.458 14.851 1 8.99 ? S8 K2A 200 A 1 HETATM 10 O O9 K2A . . . H 5 18.705 33.286 13.877 1 10.44 ? O9 K2A 200 A 1 HETATM 11 O O10 K2A . . . H 5 17.31 31.387 14.292 1 9.43 ? O10 K2A 200 A 1 HETATM 12 N N11 K2A . . . H 5 19.295 31.841 15.716 1 10.08 ? N11 K2A 200 A 1 HETATM 13 C C12 K2A . . . H 5 20.005 32.881 16.512 1 12.25 ? C12 K2A 200 A 1 HETATM 14 C C13 K2A . . . H 5 21.508 32.608 16.548 1 13.96 ? C13 K2A 200 A 1 HETATM 15 C C14 K2A . . . H 5 22.136 32.57 15.153 1 12.93 ? C14 K2A 200 A 1 HETATM 16 C C15 K2A . . . H 5 22.189 33.627 17.465 1 15.2 ? C15 K2A 200 A 1 HETATM 17 C C16 K2A . . . H 5 18.983 30.572 16.419 1 9.37 ? C16 K2A 200 A 1 HETATM 18 C C17 K2A . . . H 5 19.902 29.472 15.852 1 8.68 ? C17 K2A 200 A 1 HETATM 19 C C18 K2A . . . H 5 22.061 35.049 16.968 1 17.01 ? C18 K2A 200 A 1 HETATM 20 O O18 K2A . . . H 5 19.824 28.306 16.699 1 9.32 ? O18 K2A 200 A 1 HETATM 21 C C19 K2A . . . H 5 19.572 29.082 14.411 1 8.37 ? C19 K2A 200 A 1 HETATM 22 N N20 K2A . . . H 5 20.651 28.25 13.923 1 7.93 ? N20 K2A 200 A 1 HETATM 23 C C21 K2A . . . H 5 21.533 28.623 13.011 1 9.72 ? C21 K2A 200 A 1 HETATM 24 O O22 K2A . . . H 5 21.6 29.681 12.412 1 8.76 ? O22 K2A 200 A 1 HETATM 25 O O23 K2A . . . H 5 22.514 27.609 12.764 1 9.32 ? O23 K2A 200 A 1 HETATM 26 C C24 K2A . . . H 5 23.34 27.757 11.619 1 10.08 ? C24 K2A 200 A 1 HETATM 27 C C25 K2A . . . H 5 24.66 27.161 12.053 1 8.91 ? C25 K2A 200 A 1 HETATM 28 O O26 K2A . . . H 5 24.458 25.754 11.894 1 9.31 ? O26 K2A 200 A 1 HETATM 29 C C27 K2A . . . H 5 23.561 25.526 10.811 1 9.83 ? C27 K2A 200 A 1 HETATM 30 O O28 K2A . . . H 5 22.552 24.595 11.186 1 9.45 ? O28 K2A 200 A 1 HETATM 31 C C29 K2A . . . H 5 21.273 25.242 11.234 1 9.48 ? C29 K2A 200 A 1 HETATM 32 C C30 K2A . . . H 5 21.398 26.535 10.438 1 10.17 ? C30 K2A 200 A 1 HETATM 33 C C31 K2A . . . H 5 22.885 26.847 10.51 1 9.55 ? C31 K2A 200 A 1 HETATM 34 C C32 K2A . . . H 5 18.266 28.293 14.255 1 9.26 ? C32 K2A 200 A 1 HETATM 35 C C33 K2A . . . H 5 17.719 28.895 11.858 1 9.76 ? C33 K2A 200 A 1 HETATM 36 C C34 K2A . . . H 5 17.515 28.551 10.525 1 10.35 ? C34 K2A 200 A 1 HETATM 37 C C35 K2A . . . H 5 17.597 27.227 10.123 1 10.68 ? C35 K2A 200 A 1 HETATM 38 C C36 K2A . . . H 5 17.894 26.262 11.055 1 9.8 ? C36 K2A 200 A 1 HETATM 39 C C37 K2A . . . H 5 18.106 26.594 12.389 1 9.35 ? C37 K2A 200 A 1 HETATM 40 C C38 K2A . . . H 5 18.028 27.917 12.807 1 8.92 ? C38 K2A 200 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 40 #