data_3O9C # _model_server_result.job_id 3JKjU3NRl-PafMUQETsvmA _model_server_result.datetime_utc '2024-11-14 16:41:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o9c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3O9C # _exptl.entry_id 3O9C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 590.685 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{(1,3-benzodioxol-5-ylsulfonyl)[(2S)-2-methylbutyl]amino}-1-benzyl-2-hydroxypropyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O9C _cell.length_a 50.761 _cell.length_b 57.791 _cell.length_c 62.017 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O9C _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H38 N2 O9 S' _chem_comp.formula_weight 590.685 _chem_comp.id K20 _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-3-{(1,3-benzodioxol-5-ylsulfonyl)[(2S)-2-methylbutyl]amino}-1-benzyl-2-hydroxypropyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 K20 sing 173 n n C1 O2 K20 sing 174 n n O1 C2 K20 sing 175 n n C2 C3 K20 doub 176 n y C2 C7 K20 sing 177 n y O2 C3 K20 sing 178 n n C3 C4 K20 sing 179 n y C4 C5 K20 doub 180 n y C5 C6 K20 sing 181 n y C5 S8 K20 sing 182 n n C6 C7 K20 doub 183 n y S8 O9 K20 doub 184 n n S8 O10 K20 doub 185 n n S8 N11 K20 sing 186 n n N11 C12 K20 sing 187 n n N11 C16 K20 sing 188 n n C12 C13 K20 sing 189 n n C13 C14 K20 sing 190 n n C13 C15 K20 sing 191 n n C15 C18 K20 sing 192 n n C16 C17 K20 sing 193 n n C17 O18 K20 sing 194 n n C17 C19 K20 sing 195 n n C19 N20 K20 sing 196 n n C19 C32 K20 sing 197 n n N20 C21 K20 sing 198 n n C21 O22 K20 doub 199 n n C21 O23 K20 sing 200 n n O23 C24 K20 sing 201 n n C24 C25 K20 sing 202 n n C24 C31 K20 sing 203 n n C25 O26 K20 sing 204 n n O26 C27 K20 sing 205 n n C27 O28 K20 sing 206 n n C27 C31 K20 sing 207 n n O28 C29 K20 sing 208 n n C29 C30 K20 sing 209 n n C30 C31 K20 sing 210 n n C32 C38 K20 sing 211 n n C33 C34 K20 doub 212 n y C33 C38 K20 sing 213 n y C34 C35 K20 sing 214 n y C35 C36 K20 doub 215 n y C36 C37 K20 sing 216 n y C37 C38 K20 doub 217 n y C1 H1 K20 sing 218 n n C1 H1A K20 sing 219 n n C4 H4 K20 sing 220 n n C6 H6 K20 sing 221 n n C7 H7 K20 sing 222 n n C12 H12 K20 sing 223 n n C12 H12A K20 sing 224 n n C13 H13 K20 sing 225 n n C14 H14 K20 sing 226 n n C14 H14A K20 sing 227 n n C14 H14B K20 sing 228 n n C15 H15 K20 sing 229 n n C15 H15A K20 sing 230 n n C16 H16 K20 sing 231 n n C16 H16A K20 sing 232 n n C17 H17 K20 sing 233 n n C18 H18 K20 sing 234 n n C18 H18A K20 sing 235 n n C18 H18B K20 sing 236 n n O18 HO18 K20 sing 237 n n C19 H19 K20 sing 238 n n N20 HN20 K20 sing 239 n n C24 H24 K20 sing 240 n n C25 H25 K20 sing 241 n n C25 H25A K20 sing 242 n n C27 H27 K20 sing 243 n n C29 H29 K20 sing 244 n n C29 H29A K20 sing 245 n n C30 H30 K20 sing 246 n n C30 H30A K20 sing 247 n n C31 H31 K20 sing 248 n n C32 H32 K20 sing 249 n n C32 H32A K20 sing 250 n n C33 H33 K20 sing 251 n n C34 H34 K20 sing 252 n n C35 H35 K20 sing 253 n n C36 H36 K20 sing 254 n n C37 H37 K20 sing 255 n n # _atom_sites.entry_id 3O9C _atom_sites.fract_transf_matrix[1][1] 0.0197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017304 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016125 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K20 A 1 200 200 K20 K20 . D 3 HOH A 1 100 2 HOH HOH . D 3 HOH A 2 101 4 HOH HOH . D 3 HOH A 3 102 5 HOH HOH . D 3 HOH A 4 103 6 HOH HOH . D 3 HOH A 5 104 7 HOH HOH . D 3 HOH A 6 105 12 HOH HOH . D 3 HOH A 7 106 15 HOH HOH . D 3 HOH A 8 107 107 HOH HOH . D 3 HOH A 9 108 16 HOH HOH . D 3 HOH A 10 109 17 HOH HOH . D 3 HOH A 11 110 18 HOH HOH . D 3 HOH A 12 111 19 HOH HOH . D 3 HOH A 13 112 20 HOH HOH . D 3 HOH A 14 113 25 HOH HOH . D 3 HOH A 15 114 114 HOH HOH . D 3 HOH A 16 115 115 HOH HOH . D 3 HOH A 17 116 116 HOH HOH . D 3 HOH A 18 117 117 HOH HOH . D 3 HOH A 19 118 118 HOH HOH . D 3 HOH A 20 119 119 HOH HOH . D 3 HOH A 21 120 120 HOH HOH . D 3 HOH A 22 121 121 HOH HOH . D 3 HOH A 23 122 122 HOH HOH . D 3 HOH A 24 123 28 HOH HOH . D 3 HOH A 25 124 29 HOH HOH . D 3 HOH A 26 125 33 HOH HOH . D 3 HOH A 27 126 34 HOH HOH . D 3 HOH A 28 127 35 HOH HOH . D 3 HOH A 29 128 37 HOH HOH . D 3 HOH A 30 129 40 HOH HOH . D 3 HOH A 31 130 41 HOH HOH . D 3 HOH A 32 131 47 HOH HOH . D 3 HOH A 33 132 48 HOH HOH . D 3 HOH A 34 133 49 HOH HOH . D 3 HOH A 35 134 52 HOH HOH . D 3 HOH A 36 135 53 HOH HOH . D 3 HOH A 37 136 54 HOH HOH . D 3 HOH A 38 137 55 HOH HOH . D 3 HOH A 39 138 61 HOH HOH . D 3 HOH A 40 139 62 HOH HOH . D 3 HOH A 41 140 63 HOH HOH . D 3 HOH A 42 141 64 HOH HOH . D 3 HOH A 43 142 65 HOH HOH . D 3 HOH A 44 143 66 HOH HOH . D 3 HOH A 45 144 67 HOH HOH . D 3 HOH A 46 145 80 HOH HOH . D 3 HOH A 47 146 85 HOH HOH . D 3 HOH A 48 147 87 HOH HOH . D 3 HOH A 49 148 88 HOH HOH . D 3 HOH A 50 149 89 HOH HOH . D 3 HOH A 51 150 90 HOH HOH . D 3 HOH A 52 151 91 HOH HOH . D 3 HOH A 53 152 92 HOH HOH . D 3 HOH A 54 153 96 HOH HOH . E 3 HOH B 1 100 100 HOH HOH . E 3 HOH B 2 101 101 HOH HOH . E 3 HOH B 3 102 102 HOH HOH . E 3 HOH B 4 103 103 HOH HOH . E 3 HOH B 5 104 104 HOH HOH . E 3 HOH B 6 105 105 HOH HOH . E 3 HOH B 7 106 106 HOH HOH . E 3 HOH B 8 107 1 HOH HOH . E 3 HOH B 9 108 108 HOH HOH . E 3 HOH B 10 109 109 HOH HOH . E 3 HOH B 11 110 110 HOH HOH . E 3 HOH B 12 111 111 HOH HOH . E 3 HOH B 13 112 112 HOH HOH . E 3 HOH B 14 113 113 HOH HOH . E 3 HOH B 15 114 3 HOH HOH . E 3 HOH B 16 115 8 HOH HOH . E 3 HOH B 17 116 9 HOH HOH . E 3 HOH B 18 117 10 HOH HOH . E 3 HOH B 19 118 11 HOH HOH . E 3 HOH B 20 119 13 HOH HOH . E 3 HOH B 21 120 14 HOH HOH . E 3 HOH B 22 121 21 HOH HOH . E 3 HOH B 23 122 22 HOH HOH . E 3 HOH B 24 123 23 HOH HOH . E 3 HOH B 25 124 24 HOH HOH . E 3 HOH B 26 125 26 HOH HOH . E 3 HOH B 27 126 27 HOH HOH . E 3 HOH B 28 127 30 HOH HOH . E 3 HOH B 29 128 31 HOH HOH . E 3 HOH B 30 129 32 HOH HOH . E 3 HOH B 31 130 36 HOH HOH . E 3 HOH B 32 131 38 HOH HOH . E 3 HOH B 33 132 39 HOH HOH . E 3 HOH B 34 133 42 HOH HOH . E 3 HOH B 35 134 43 HOH HOH . E 3 HOH B 36 135 44 HOH HOH . E 3 HOH B 37 136 45 HOH HOH . E 3 HOH B 38 137 46 HOH HOH . E 3 HOH B 39 138 50 HOH HOH . E 3 HOH B 40 139 51 HOH HOH . E 3 HOH B 41 140 56 HOH HOH . E 3 HOH B 42 141 57 HOH HOH . E 3 HOH B 43 142 58 HOH HOH . E 3 HOH B 44 143 59 HOH HOH . E 3 HOH B 45 144 60 HOH HOH . E 3 HOH B 46 145 68 HOH HOH . E 3 HOH B 47 146 69 HOH HOH . E 3 HOH B 48 147 70 HOH HOH . E 3 HOH B 49 148 71 HOH HOH . E 3 HOH B 50 149 72 HOH HOH . E 3 HOH B 51 150 73 HOH HOH . E 3 HOH B 52 151 74 HOH HOH . E 3 HOH B 53 152 75 HOH HOH . E 3 HOH B 54 153 76 HOH HOH . E 3 HOH B 55 154 77 HOH HOH . E 3 HOH B 56 155 78 HOH HOH . E 3 HOH B 57 156 79 HOH HOH . E 3 HOH B 58 157 81 HOH HOH . E 3 HOH B 59 158 82 HOH HOH . E 3 HOH B 60 159 83 HOH HOH . E 3 HOH B 61 160 84 HOH HOH . E 3 HOH B 62 161 86 HOH HOH . E 3 HOH B 63 162 93 HOH HOH . E 3 HOH B 64 163 94 HOH HOH . E 3 HOH B 65 164 95 HOH HOH . E 3 HOH B 66 165 97 HOH HOH . E 3 HOH B 67 166 98 HOH HOH . E 3 HOH B 68 167 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K20 . . . C 2 15.686 36.742 18.431 1 17.29 ? C1 K20 200 A 1 HETATM 2 O O1 K20 . . . C 2 15.012 35.47 18.597 1 16.76 ? O1 K20 200 A 1 HETATM 3 C C2 K20 . . . C 2 15.605 34.581 17.722 1 15.83 ? C2 K20 200 A 1 HETATM 4 O O2 K20 . . . C 2 16.634 36.546 17.374 1 16.92 ? O2 K20 200 A 1 HETATM 5 C C3 K20 . . . C 2 16.595 35.218 17.002 1 13.46 ? C3 K20 200 A 1 HETATM 6 C C4 K20 . . . C 2 17.337 34.543 16.035 1 11.92 ? C4 K20 200 A 1 HETATM 7 C C5 K20 . . . C 2 17.122 33.174 15.807 1 12.1 ? C5 K20 200 A 1 HETATM 8 C C6 K20 . . . C 2 16.114 32.546 16.55 1 12.15 ? C6 K20 200 A 1 HETATM 9 C C7 K20 . . . C 2 15.35 33.231 17.512 1 14.45 ? C7 K20 200 A 1 HETATM 10 S S8 K20 . . . C 2 18.029 32.341 14.748 1 12.79 ? S8 K20 200 A 1 HETATM 11 O O9 K20 . . . C 2 17.314 31.217 14.243 1 11.88 ? O9 K20 200 A 1 HETATM 12 O O10 K20 . . . C 2 18.52 33.207 13.683 1 12.43 ? O10 K20 200 A 1 HETATM 13 N N11 K20 . . . C 2 19.337 31.734 15.492 1 13.2 ? N11 K20 200 A 1 HETATM 14 C C12 K20 . . . C 2 20.108 32.745 16.258 1 14.99 ? C12 K20 200 A 1 HETATM 15 C C13 K20 . . . C 2 21.606 32.441 16.362 1 16.87 ? C13 K20 200 A 1 HETATM 16 C C14 K20 . . . C 2 22.334 32.419 15.012 1 15.04 ? C14 K20 200 A 1 HETATM 17 C C15 K20 . . . C 2 22.257 33.446 17.319 1 20.85 ? C15 K20 200 A 1 HETATM 18 C C16 K20 . . . C 2 19.054 30.512 16.274 1 10.03 ? C16 K20 200 A 1 HETATM 19 C C17 K20 . . . C 2 19.956 29.381 15.765 1 11.7 ? C17 K20 200 A 1 HETATM 20 C C18 K20 . . . C 2 22.059 34.888 16.917 1 23.69 ? C18 K20 200 A 1 HETATM 21 O O18 K20 . . . C 2 19.942 28.262 16.659 1 11.03 ? O18 K20 200 A 1 HETATM 22 C C19 K20 . . . C 2 19.579 28.915 14.364 1 11 ? C19 K20 200 A 1 HETATM 23 N N20 K20 . . . C 2 20.649 28.08 13.871 1 12.42 ? N20 K20 200 A 1 HETATM 24 C C21 K20 . . . C 2 21.491 28.434 12.913 1 10.12 ? C21 K20 200 A 1 HETATM 25 O O22 K20 . . . C 2 21.554 29.48 12.275 1 10.87 ? O22 K20 200 A 1 HETATM 26 O O23 K20 . . . C 2 22.454 27.405 12.672 1 12.57 ? O23 K20 200 A 1 HETATM 27 C C24 K20 . . . C 2 23.252 27.549 11.503 1 13.96 ? C24 K20 200 A 1 HETATM 28 C C25 K20 . . . C 2 24.577 26.961 11.921 1 14.3 ? C25 K20 200 A 1 HETATM 29 O O26 K20 . . . C 2 24.306 25.561 11.897 1 12.73 ? O26 K20 200 A 1 HETATM 30 C C27 K20 . . . C 2 23.46 25.29 10.786 1 16.36 ? C27 K20 200 A 1 HETATM 31 O O28 K20 . . . C 2 22.481 24.336 11.17 1 16.23 ? O28 K20 200 A 1 HETATM 32 C C29 K20 . . . C 2 21.202 24.968 11.25 1 16.8 ? C29 K20 200 A 1 HETATM 33 C C30 K20 . . . C 2 21.305 26.232 10.399 1 17.84 ? C30 K20 200 A 1 HETATM 34 C C31 K20 . . . C 2 22.781 26.596 10.418 1 14.99 ? C31 K20 200 A 1 HETATM 35 C C32 K20 . . . C 2 18.272 28.129 14.272 1 11.66 ? C32 K20 200 A 1 HETATM 36 C C33 K20 . . . C 2 18.106 26.383 12.439 1 13.31 ? C33 K20 200 A 1 HETATM 37 C C34 K20 . . . C 2 17.872 26.017 11.12 1 15.21 ? C34 K20 200 A 1 HETATM 38 C C35 K20 . . . C 2 17.512 26.965 10.18 1 17.21 ? C35 K20 200 A 1 HETATM 39 C C36 K20 . . . C 2 17.418 28.293 10.556 1 15.96 ? C36 K20 200 A 1 HETATM 40 C C37 K20 . . . C 2 17.651 28.658 11.882 1 14.5 ? C37 K20 200 A 1 HETATM 41 C C38 K20 . . . C 2 18 27.714 12.836 1 13.07 ? C38 K20 200 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 41 #