data_3O9D # _model_server_result.job_id 91YL9q5ie_ZAtWppPxRpTQ _model_server_result.datetime_utc '2024-11-27 18:58:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o9d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":100}' # _entry.id 3O9D # _exptl.entry_id 3O9D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O9D _cell.length_a 50.708 _cell.length_b 57.6 _cell.length_c 61.718 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O9D _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 348 n n P O2 PO4 sing 349 n n P O3 PO4 sing 350 n n P O4 PO4 sing 351 n n # _atom_sites.entry_id 3O9D _atom_sites.fract_transf_matrix[1][1] 0.019721 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017361 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016203 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 100 2 PO4 PO4 . D 3 ACT A 1 101 3 ACT ACT . E 3 ACT A 1 102 4 ACT ACT . F 4 K19 A 1 200 200 K19 K19 . G 2 PO4 B 1 100 1 PO4 PO4 . H 5 HOH A 1 103 1 HOH HOH . H 5 HOH A 2 104 3 HOH HOH . H 5 HOH A 3 105 4 HOH HOH . H 5 HOH A 4 106 5 HOH HOH . H 5 HOH A 5 107 7 HOH HOH . H 5 HOH A 6 108 12 HOH HOH . H 5 HOH A 7 109 13 HOH HOH . H 5 HOH A 8 110 15 HOH HOH . H 5 HOH A 9 111 16 HOH HOH . H 5 HOH A 10 112 17 HOH HOH . H 5 HOH A 11 113 20 HOH HOH . H 5 HOH A 12 114 22 HOH HOH . H 5 HOH A 13 115 23 HOH HOH . H 5 HOH A 14 116 28 HOH HOH . H 5 HOH A 15 117 31 HOH HOH . H 5 HOH A 16 118 36 HOH HOH . H 5 HOH A 17 119 45 HOH HOH . H 5 HOH A 18 120 47 HOH HOH . H 5 HOH A 19 121 48 HOH HOH . H 5 HOH A 20 122 49 HOH HOH . H 5 HOH A 21 123 50 HOH HOH . H 5 HOH A 22 124 51 HOH HOH . H 5 HOH A 23 125 52 HOH HOH . H 5 HOH A 24 126 53 HOH HOH . H 5 HOH A 25 127 54 HOH HOH . H 5 HOH A 26 128 71 HOH HOH . H 5 HOH A 27 129 72 HOH HOH . H 5 HOH A 28 130 73 HOH HOH . H 5 HOH A 29 131 74 HOH HOH . H 5 HOH A 30 132 75 HOH HOH . H 5 HOH A 31 133 76 HOH HOH . H 5 HOH A 32 134 77 HOH HOH . H 5 HOH A 33 135 78 HOH HOH . H 5 HOH A 34 136 79 HOH HOH . H 5 HOH A 35 137 80 HOH HOH . H 5 HOH A 36 138 81 HOH HOH . H 5 HOH A 37 139 82 HOH HOH . H 5 HOH A 38 140 83 HOH HOH . H 5 HOH A 39 141 86 HOH HOH . H 5 HOH A 40 142 87 HOH HOH . H 5 HOH A 41 143 88 HOH HOH . H 5 HOH A 42 144 89 HOH HOH . H 5 HOH A 43 145 90 HOH HOH . H 5 HOH A 44 146 91 HOH HOH . H 5 HOH A 45 147 92 HOH HOH . H 5 HOH A 46 148 93 HOH HOH . H 5 HOH A 47 149 94 HOH HOH . I 5 HOH B 1 101 2 HOH HOH . I 5 HOH B 2 102 6 HOH HOH . I 5 HOH B 3 103 8 HOH HOH . I 5 HOH B 4 104 9 HOH HOH . I 5 HOH B 5 105 10 HOH HOH . I 5 HOH B 6 106 11 HOH HOH . I 5 HOH B 7 107 14 HOH HOH . I 5 HOH B 8 108 18 HOH HOH . I 5 HOH B 9 109 19 HOH HOH . I 5 HOH B 10 110 21 HOH HOH . I 5 HOH B 11 111 24 HOH HOH . I 5 HOH B 12 112 25 HOH HOH . I 5 HOH B 13 113 26 HOH HOH . I 5 HOH B 14 114 27 HOH HOH . I 5 HOH B 15 115 29 HOH HOH . I 5 HOH B 16 116 30 HOH HOH . I 5 HOH B 17 117 32 HOH HOH . I 5 HOH B 18 118 33 HOH HOH . I 5 HOH B 19 119 34 HOH HOH . I 5 HOH B 20 120 35 HOH HOH . I 5 HOH B 21 121 37 HOH HOH . I 5 HOH B 22 122 38 HOH HOH . I 5 HOH B 23 123 39 HOH HOH . I 5 HOH B 24 124 40 HOH HOH . I 5 HOH B 25 125 41 HOH HOH . I 5 HOH B 26 126 42 HOH HOH . I 5 HOH B 27 127 43 HOH HOH . I 5 HOH B 28 128 44 HOH HOH . I 5 HOH B 29 129 46 HOH HOH . I 5 HOH B 30 130 55 HOH HOH . I 5 HOH B 31 131 56 HOH HOH . I 5 HOH B 32 132 57 HOH HOH . I 5 HOH B 33 133 58 HOH HOH . I 5 HOH B 34 134 59 HOH HOH . I 5 HOH B 35 135 60 HOH HOH . I 5 HOH B 36 136 61 HOH HOH . I 5 HOH B 37 137 62 HOH HOH . I 5 HOH B 38 138 63 HOH HOH . I 5 HOH B 39 139 64 HOH HOH . I 5 HOH B 40 140 65 HOH HOH . I 5 HOH B 41 141 66 HOH HOH . I 5 HOH B 42 142 67 HOH HOH . I 5 HOH B 43 143 68 HOH HOH . I 5 HOH B 44 144 69 HOH HOH . I 5 HOH B 45 145 70 HOH HOH . I 5 HOH B 46 146 84 HOH HOH . I 5 HOH B 47 147 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . G 2 -5.499 26.221 21.986 1 53.26 ? P PO4 100 B 1 HETATM 2 O O1 PO4 . . . G 2 -4.509 25.687 22.994 1 52.89 ? O1 PO4 100 B 1 HETATM 3 O O2 PO4 . . . G 2 -4.696 26.811 20.865 1 54.11 ? O2 PO4 100 B 1 HETATM 4 O O3 PO4 . . . G 2 -6.382 25.1 21.481 1 53.08 ? O3 PO4 100 B 1 HETATM 5 O O4 PO4 . . . G 2 -6.388 27.319 22.524 1 53.33 ? O4 PO4 100 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #