data_3O9F # _model_server_result.job_id iGljP-HX0ion7Huu-rGTDA _model_server_result.datetime_utc '2024-12-01 17:38:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o9f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":200}' # _entry.id 3O9F # _exptl.entry_id 3O9F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 590.728 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-3-{(2-ethylbutyl)[(4-methoxyphenyl)sulfonyl]amino}-2-hydroxypropyl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O9F _cell.length_a 50.773 _cell.length_b 57.934 _cell.length_c 61.794 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O9F _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H42 N2 O8 S' _chem_comp.formula_weight 590.728 _chem_comp.id K2D _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl [(1S,2R)-1-benzyl-3-{(2-ethylbutyl)[(4-methoxyphenyl)sulfonyl]amino}-2-hydroxypropyl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 K2D sing 179 n n O1 C2 K2D sing 180 n n C2 C3 K2D doub 181 n y C2 C7 K2D sing 182 n y C3 C4 K2D sing 183 n y C4 C5 K2D doub 184 n y C5 C6 K2D sing 185 n y C5 S8 K2D sing 186 n n C6 C7 K2D doub 187 n y S8 O9 K2D doub 188 n n S8 O10 K2D doub 189 n n S8 N11 K2D sing 190 n n N11 C12 K2D sing 191 n n N11 C16 K2D sing 192 n n C12 C13 K2D sing 193 n n C13 C14 K2D sing 194 n n C13 C15 K2D sing 195 n n C14 C20 K2D sing 196 n n C15 C18 K2D sing 197 n n C16 C17 K2D sing 198 n n C17 O18 K2D sing 199 n n C17 C19 K2D sing 200 n n C19 N20 K2D sing 201 n n C19 C32 K2D sing 202 n n N20 C21 K2D sing 203 n n C21 O22 K2D doub 204 n n C21 O23 K2D sing 205 n n O23 C24 K2D sing 206 n n C24 C25 K2D sing 207 n n C24 C31 K2D sing 208 n n C25 O26 K2D sing 209 n n O26 C27 K2D sing 210 n n C27 O28 K2D sing 211 n n C27 C31 K2D sing 212 n n O28 C29 K2D sing 213 n n C29 C30 K2D sing 214 n n C30 C31 K2D sing 215 n n C32 C38 K2D sing 216 n n C33 C34 K2D doub 217 n y C33 C38 K2D sing 218 n y C34 C35 K2D sing 219 n y C35 C36 K2D doub 220 n y C36 C37 K2D sing 221 n y C37 C38 K2D doub 222 n y C1 H1 K2D sing 223 n n C1 H1A K2D sing 224 n n C1 H1B K2D sing 225 n n C3 H3 K2D sing 226 n n C4 H4 K2D sing 227 n n C6 H6 K2D sing 228 n n C7 H7 K2D sing 229 n n C12 H12 K2D sing 230 n n C12 H12A K2D sing 231 n n C13 H13 K2D sing 232 n n C14 H14 K2D sing 233 n n C14 H14A K2D sing 234 n n C15 H15 K2D sing 235 n n C15 H15A K2D sing 236 n n C16 H16 K2D sing 237 n n C16 H16A K2D sing 238 n n C17 H17 K2D sing 239 n n C18 H18 K2D sing 240 n n C18 H18A K2D sing 241 n n C18 H18B K2D sing 242 n n O18 HO18 K2D sing 243 n n C19 H19 K2D sing 244 n n C20 H20 K2D sing 245 n n C20 H20A K2D sing 246 n n C20 H20B K2D sing 247 n n N20 HN20 K2D sing 248 n n C24 H24 K2D sing 249 n n C25 H25 K2D sing 250 n n C25 H25A K2D sing 251 n n C27 H27 K2D sing 252 n n C29 H29 K2D sing 253 n n C29 H29A K2D sing 254 n n C30 H30 K2D sing 255 n n C30 H30A K2D sing 256 n n C31 H31 K2D sing 257 n n C32 H32 K2D sing 258 n n C32 H32A K2D sing 259 n n C33 H33 K2D sing 260 n n C34 H34 K2D sing 261 n n C35 H35 K2D sing 262 n n C36 H36 K2D sing 263 n n C37 H37 K2D sing 264 n n # _atom_sites.entry_id 3O9F _atom_sites.fract_transf_matrix[1][1] 0.019696 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017261 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 K2D A 1 200 200 K2D K2D . D 3 ACT A 1 100 3 ACT ACT . E 3 ACT A 1 101 4 ACT ACT . F 3 ACT A 1 102 5 ACT ACT . G 4 PO4 B 1 100 1 PO4 PO4 . H 5 HOH A 1 103 103 HOH HOH . H 5 HOH A 2 104 104 HOH HOH . H 5 HOH A 3 105 105 HOH HOH . H 5 HOH A 4 106 106 HOH HOH . H 5 HOH A 5 107 107 HOH HOH . H 5 HOH A 6 108 108 HOH HOH . H 5 HOH A 7 109 109 HOH HOH . H 5 HOH A 8 110 110 HOH HOH . H 5 HOH A 9 111 111 HOH HOH . H 5 HOH A 10 112 112 HOH HOH . H 5 HOH A 11 113 113 HOH HOH . H 5 HOH A 12 114 114 HOH HOH . H 5 HOH A 13 115 115 HOH HOH . H 5 HOH A 14 116 116 HOH HOH . H 5 HOH A 15 117 117 HOH HOH . H 5 HOH A 16 118 118 HOH HOH . H 5 HOH A 17 119 119 HOH HOH . H 5 HOH A 18 120 120 HOH HOH . H 5 HOH A 19 121 1 HOH HOH . H 5 HOH A 20 122 122 HOH HOH . H 5 HOH A 21 123 5 HOH HOH . H 5 HOH A 22 124 124 HOH HOH . H 5 HOH A 23 125 125 HOH HOH . H 5 HOH A 24 126 126 HOH HOH . H 5 HOH A 25 127 127 HOH HOH . H 5 HOH A 26 128 128 HOH HOH . H 5 HOH A 27 129 129 HOH HOH . H 5 HOH A 28 130 130 HOH HOH . H 5 HOH A 29 131 131 HOH HOH . H 5 HOH A 30 132 132 HOH HOH . H 5 HOH A 31 133 133 HOH HOH . H 5 HOH A 32 134 134 HOH HOH . H 5 HOH A 33 135 8 HOH HOH . H 5 HOH A 34 136 136 HOH HOH . H 5 HOH A 35 137 9 HOH HOH . H 5 HOH A 36 138 10 HOH HOH . H 5 HOH A 37 139 11 HOH HOH . H 5 HOH A 38 140 14 HOH HOH . H 5 HOH A 39 141 15 HOH HOH . H 5 HOH A 40 142 16 HOH HOH . H 5 HOH A 41 143 18 HOH HOH . H 5 HOH A 42 144 19 HOH HOH . H 5 HOH A 43 145 21 HOH HOH . H 5 HOH A 44 146 22 HOH HOH . H 5 HOH A 45 147 23 HOH HOH . H 5 HOH A 46 148 24 HOH HOH . H 5 HOH A 47 149 25 HOH HOH . H 5 HOH A 48 150 26 HOH HOH . H 5 HOH A 49 151 30 HOH HOH . H 5 HOH A 50 152 34 HOH HOH . H 5 HOH A 51 153 56 HOH HOH . H 5 HOH A 52 154 63 HOH HOH . H 5 HOH A 53 155 64 HOH HOH . H 5 HOH A 54 156 65 HOH HOH . H 5 HOH A 55 157 66 HOH HOH . H 5 HOH A 56 158 67 HOH HOH . H 5 HOH A 57 159 68 HOH HOH . H 5 HOH A 58 160 69 HOH HOH . H 5 HOH A 59 161 70 HOH HOH . H 5 HOH A 60 162 71 HOH HOH . H 5 HOH A 61 163 72 HOH HOH . H 5 HOH A 62 164 73 HOH HOH . H 5 HOH A 63 165 74 HOH HOH . H 5 HOH A 64 166 79 HOH HOH . H 5 HOH A 65 167 85 HOH HOH . H 5 HOH A 66 168 86 HOH HOH . H 5 HOH A 67 169 89 HOH HOH . H 5 HOH A 68 170 90 HOH HOH . H 5 HOH A 69 171 100 HOH HOH . H 5 HOH A 70 172 102 HOH HOH . I 5 HOH B 1 101 101 HOH HOH . I 5 HOH B 2 102 2 HOH HOH . I 5 HOH B 3 103 3 HOH HOH . I 5 HOH B 4 104 4 HOH HOH . I 5 HOH B 5 105 6 HOH HOH . I 5 HOH B 6 106 7 HOH HOH . I 5 HOH B 7 107 12 HOH HOH . I 5 HOH B 8 108 13 HOH HOH . I 5 HOH B 9 109 17 HOH HOH . I 5 HOH B 10 110 20 HOH HOH . I 5 HOH B 11 111 27 HOH HOH . I 5 HOH B 12 112 28 HOH HOH . I 5 HOH B 13 113 29 HOH HOH . I 5 HOH B 14 114 31 HOH HOH . I 5 HOH B 15 115 32 HOH HOH . I 5 HOH B 16 116 33 HOH HOH . I 5 HOH B 17 117 35 HOH HOH . I 5 HOH B 18 118 36 HOH HOH . I 5 HOH B 19 119 37 HOH HOH . I 5 HOH B 20 120 38 HOH HOH . I 5 HOH B 21 121 121 HOH HOH . I 5 HOH B 22 122 39 HOH HOH . I 5 HOH B 23 123 123 HOH HOH . I 5 HOH B 24 124 40 HOH HOH . I 5 HOH B 25 125 41 HOH HOH . I 5 HOH B 26 126 42 HOH HOH . I 5 HOH B 27 127 43 HOH HOH . I 5 HOH B 28 128 44 HOH HOH . I 5 HOH B 29 129 45 HOH HOH . I 5 HOH B 30 130 46 HOH HOH . I 5 HOH B 31 131 47 HOH HOH . I 5 HOH B 32 132 48 HOH HOH . I 5 HOH B 33 133 49 HOH HOH . I 5 HOH B 34 134 50 HOH HOH . I 5 HOH B 35 135 135 HOH HOH . I 5 HOH B 36 136 51 HOH HOH . I 5 HOH B 37 137 137 HOH HOH . I 5 HOH B 38 138 52 HOH HOH . I 5 HOH B 39 139 53 HOH HOH . I 5 HOH B 40 140 54 HOH HOH . I 5 HOH B 41 141 55 HOH HOH . I 5 HOH B 42 142 57 HOH HOH . I 5 HOH B 43 143 58 HOH HOH . I 5 HOH B 44 144 59 HOH HOH . I 5 HOH B 45 145 60 HOH HOH . I 5 HOH B 46 146 61 HOH HOH . I 5 HOH B 47 147 62 HOH HOH . I 5 HOH B 48 148 75 HOH HOH . I 5 HOH B 49 149 76 HOH HOH . I 5 HOH B 50 150 77 HOH HOH . I 5 HOH B 51 151 78 HOH HOH . I 5 HOH B 52 152 80 HOH HOH . I 5 HOH B 53 153 81 HOH HOH . I 5 HOH B 54 154 82 HOH HOH . I 5 HOH B 55 155 83 HOH HOH . I 5 HOH B 56 156 84 HOH HOH . I 5 HOH B 57 157 87 HOH HOH . I 5 HOH B 58 158 88 HOH HOH . I 5 HOH B 59 159 91 HOH HOH . I 5 HOH B 60 160 92 HOH HOH . I 5 HOH B 61 161 93 HOH HOH . I 5 HOH B 62 162 94 HOH HOH . I 5 HOH B 63 163 95 HOH HOH . I 5 HOH B 64 164 96 HOH HOH . I 5 HOH B 65 165 97 HOH HOH . I 5 HOH B 66 166 98 HOH HOH . I 5 HOH B 67 167 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K2D . . . C 2 15.149 36.922 18.882 1 24.14 ? C1 K2D 200 A 1 HETATM 2 O O1 K2D . . . C 2 14.771 35.559 18.641 1 22.74 ? O1 K2D 200 A 1 HETATM 3 C C2 K2D . . . C 2 15.497 34.834 17.724 1 20.17 ? C2 K2D 200 A 1 HETATM 4 C C3 K2D . . . C 2 16.45 35.473 16.908 1 20.34 ? C3 K2D 200 A 1 HETATM 5 C C4 K2D . . . C 2 17.184 34.702 15.998 1 20.06 ? C4 K2D 200 A 1 HETATM 6 C C5 K2D . . . C 2 16.969 33.33 15.834 1 18.84 ? C5 K2D 200 A 1 HETATM 7 C C6 K2D . . . C 2 16.01 32.713 16.649 1 19.15 ? C6 K2D 200 A 1 HETATM 8 C C7 K2D . . . C 2 15.276 33.462 17.579 1 19.88 ? C7 K2D 200 A 1 HETATM 9 S S8 K2D . . . C 2 17.905 32.467 14.799 1 19.31 ? S8 K2D 200 A 1 HETATM 10 O O9 K2D . . . C 2 18.497 33.313 13.789 1 20.05 ? O9 K2D 200 A 1 HETATM 11 O O10 K2D . . . C 2 17.175 31.381 14.243 1 17.11 ? O10 K2D 200 A 1 HETATM 12 N N11 K2D . . . C 2 19.163 31.851 15.629 1 20.14 ? N11 K2D 200 A 1 HETATM 13 C C12 K2D . . . C 2 19.845 32.835 16.52 1 21.52 ? C12 K2D 200 A 1 HETATM 14 C C13 K2D . . . C 2 21.372 32.688 16.485 1 22.3 ? C13 K2D 200 A 1 HETATM 15 C C14 K2D . . . C 2 21.931 32.819 15.066 1 24.18 ? C14 K2D 200 A 1 HETATM 16 C C15 K2D . . . C 2 22.023 33.672 17.466 1 23.91 ? C15 K2D 200 A 1 HETATM 17 C C16 K2D . . . C 2 18.862 30.557 16.285 1 18.86 ? C16 K2D 200 A 1 HETATM 18 C C17 K2D . . . C 2 19.824 29.501 15.726 1 18.34 ? C17 K2D 200 A 1 HETATM 19 C C18 K2D . . . C 2 21.888 35.12 17.073 1 24.56 ? C18 K2D 200 A 1 HETATM 20 O O18 K2D . . . C 2 19.824 28.336 16.568 1 18.11 ? O18 K2D 200 A 1 HETATM 21 C C19 K2D . . . C 2 19.501 29.091 14.298 1 16.61 ? C19 K2D 200 A 1 HETATM 22 C C20 K2D . . . C 2 23.33 32.253 14.934 1 24.71 ? C20 K2D 200 A 1 HETATM 23 N N20 K2D . . . C 2 20.607 28.291 13.838 1 16.37 ? N20 K2D 200 A 1 HETATM 24 C C21 K2D . . . C 2 21.498 28.656 12.919 1 19.09 ? C21 K2D 200 A 1 HETATM 25 O O22 K2D . . . C 2 21.578 29.702 12.298 1 19.55 ? O22 K2D 200 A 1 HETATM 26 O O23 K2D . . . C 2 22.449 27.611 12.655 1 20.01 ? O23 K2D 200 A 1 HETATM 27 C C24 K2D . . . C 2 23.298 27.778 11.523 1 18.86 ? C24 K2D 200 A 1 HETATM 28 C C25 K2D . . . C 2 24.63 27.231 11.996 1 19.43 ? C25 K2D 200 A 1 HETATM 29 O O26 K2D . . . C 2 24.426 25.827 11.871 1 19.56 ? O26 K2D 200 A 1 HETATM 30 C C27 K2D . . . C 2 23.531 25.549 10.788 1 20.71 ? C27 K2D 200 A 1 HETATM 31 O O28 K2D . . . C 2 22.534 24.602 11.175 1 19.58 ? O28 K2D 200 A 1 HETATM 32 C C29 K2D . . . C 2 21.244 25.229 11.158 1 19.99 ? C29 K2D 200 A 1 HETATM 33 C C30 K2D . . . C 2 21.372 26.498 10.323 1 20.25 ? C30 K2D 200 A 1 HETATM 34 C C31 K2D . . . C 2 22.85 26.849 10.409 1 18.71 ? C31 K2D 200 A 1 HETATM 35 C C32 K2D . . . C 2 18.207 28.284 14.191 1 17.8 ? C32 K2D 200 A 1 HETATM 36 C C33 K2D . . . C 2 18.084 26.588 12.328 1 17.89 ? C33 K2D 200 A 1 HETATM 37 C C34 K2D . . . C 2 17.874 26.236 11.006 1 18.94 ? C34 K2D 200 A 1 HETATM 38 C C35 K2D . . . C 2 17.531 27.206 10.085 1 19.33 ? C35 K2D 200 A 1 HETATM 39 C C36 K2D . . . C 2 17.409 28.535 10.479 1 21.38 ? C36 K2D 200 A 1 HETATM 40 C C37 K2D . . . C 2 17.615 28.893 11.813 1 20.76 ? C37 K2D 200 A 1 HETATM 41 C C38 K2D . . . C 2 17.962 27.915 12.74 1 19.76 ? C38 K2D 200 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 41 #