data_3O9G # _model_server_result.job_id N9RcIkPn15L58wJACGqysw _model_server_result.datetime_utc '2024-11-25 21:36:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3o9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":200}' # _entry.id 3O9G # _exptl.entry_id 3O9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 590.728 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-1-benzyl-3-[(2-ethylbutyl){[4-(hydroxymethyl)phenyl]sulfonyl}amino]-2-hydroxypropyl}carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3O9G _cell.length_a 50.675 _cell.length_b 57.816 _cell.length_c 61.741 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3O9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H42 N2 O8 S' _chem_comp.formula_weight 590.728 _chem_comp.id F53 _chem_comp.mon_nstd_flag . _chem_comp.name '(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(1S,2R)-1-benzyl-3-[(2-ethylbutyl){[4-(hydroxymethyl)phenyl]sulfonyl}amino]-2-hydroxypropyl}carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 F53 sing 83 n n C1 C2 F53 sing 84 n n C2 C3 F53 doub 85 n y C2 C7 F53 sing 86 n y C3 C4 F53 sing 87 n y C4 C5 F53 doub 88 n y C5 C6 F53 sing 89 n y C5 S8 F53 sing 90 n n C6 C7 F53 doub 91 n y O8 C27 F53 sing 92 n n O8 C29 F53 sing 93 n n S8 O9 F53 doub 94 n n S8 O10 F53 doub 95 n n S8 N11 F53 sing 96 n n N11 C12 F53 sing 97 n n N11 C16 F53 sing 98 n n C12 C13 F53 sing 99 n n C13 C14 F53 sing 100 n n C13 C15 F53 sing 101 n n C14 C20 F53 sing 102 n n C15 C18 F53 sing 103 n n C16 C17 F53 sing 104 n n C17 O18 F53 sing 105 n n C17 C19 F53 sing 106 n n C19 N20 F53 sing 107 n n C19 C32 F53 sing 108 n n N20 C21 F53 sing 109 n n C21 O22 F53 doub 110 n n C21 O23 F53 sing 111 n n O23 C24 F53 sing 112 n n C24 C25 F53 sing 113 n n C24 C31 F53 sing 114 n n C25 O26 F53 sing 115 n n O26 C27 F53 sing 116 n n C27 C31 F53 sing 117 n n C29 C30 F53 sing 118 n n C30 C31 F53 sing 119 n n C32 C38 F53 sing 120 n n C33 C34 F53 doub 121 n y C33 C38 F53 sing 122 n y C34 C35 F53 sing 123 n y C35 C36 F53 doub 124 n y C36 C37 F53 sing 125 n y C37 C38 F53 doub 126 n y C1 H1 F53 sing 127 n n C1 H1A F53 sing 128 n n O1 HO1 F53 sing 129 n n C3 H3 F53 sing 130 n n C4 H4 F53 sing 131 n n C6 H6 F53 sing 132 n n C7 H7 F53 sing 133 n n C12 H12 F53 sing 134 n n C12 H12A F53 sing 135 n n C13 H13 F53 sing 136 n n C14 H14 F53 sing 137 n n C14 H14A F53 sing 138 n n C15 H15 F53 sing 139 n n C15 H15A F53 sing 140 n n C16 H16 F53 sing 141 n n C16 H16A F53 sing 142 n n C17 H17 F53 sing 143 n n C18 H18 F53 sing 144 n n C18 H18A F53 sing 145 n n C18 H18B F53 sing 146 n n O18 HO18 F53 sing 147 n n C19 H19 F53 sing 148 n n C20 H20 F53 sing 149 n n C20 H20A F53 sing 150 n n C20 H20B F53 sing 151 n n N20 HN20 F53 sing 152 n n C24 H24 F53 sing 153 n n C25 H25 F53 sing 154 n n C25 H25A F53 sing 155 n n C27 H27 F53 sing 156 n n C29 H29 F53 sing 157 n n C29 H29A F53 sing 158 n n C30 H30 F53 sing 159 n n C30 H30A F53 sing 160 n n C31 H31 F53 sing 161 n n C32 H32 F53 sing 162 n n C32 H32A F53 sing 163 n n C33 H33 F53 sing 164 n n C34 H34 F53 sing 165 n n C35 H35 F53 sing 166 n n C36 H36 F53 sing 167 n n C37 H37 F53 sing 168 n n # _atom_sites.entry_id 3O9G _atom_sites.fract_transf_matrix[1][1] 0.019734 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016197 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 100 1 PO4 PO4 . D 2 PO4 A 1 101 2 PO4 PO4 . E 2 PO4 A 1 102 3 PO4 PO4 . F 3 F53 A 1 200 200 F53 F53 . G 4 HOH A 1 103 103 HOH HOH . G 4 HOH A 2 104 104 HOH HOH . G 4 HOH A 3 105 105 HOH HOH . G 4 HOH A 4 106 106 HOH HOH . G 4 HOH A 5 107 107 HOH HOH . G 4 HOH A 6 108 108 HOH HOH . G 4 HOH A 7 109 109 HOH HOH . G 4 HOH A 8 110 110 HOH HOH . G 4 HOH A 9 111 111 HOH HOH . G 4 HOH A 10 112 112 HOH HOH . G 4 HOH A 11 113 113 HOH HOH . G 4 HOH A 12 114 114 HOH HOH . G 4 HOH A 13 115 115 HOH HOH . G 4 HOH A 14 116 1 HOH HOH . G 4 HOH A 15 117 5 HOH HOH . G 4 HOH A 16 118 118 HOH HOH . G 4 HOH A 17 119 7 HOH HOH . G 4 HOH A 18 120 8 HOH HOH . G 4 HOH A 19 121 9 HOH HOH . G 4 HOH A 20 122 10 HOH HOH . G 4 HOH A 21 123 12 HOH HOH . G 4 HOH A 22 124 14 HOH HOH . G 4 HOH A 23 125 17 HOH HOH . G 4 HOH A 24 126 126 HOH HOH . G 4 HOH A 25 127 18 HOH HOH . G 4 HOH A 26 128 19 HOH HOH . G 4 HOH A 27 129 129 HOH HOH . G 4 HOH A 28 130 130 HOH HOH . G 4 HOH A 29 131 131 HOH HOH . G 4 HOH A 30 132 132 HOH HOH . G 4 HOH A 31 133 133 HOH HOH . G 4 HOH A 32 134 20 HOH HOH . G 4 HOH A 33 135 21 HOH HOH . G 4 HOH A 34 136 22 HOH HOH . G 4 HOH A 35 137 24 HOH HOH . G 4 HOH A 36 138 138 HOH HOH . G 4 HOH A 37 139 25 HOH HOH . G 4 HOH A 38 140 26 HOH HOH . G 4 HOH A 39 141 28 HOH HOH . G 4 HOH A 40 142 31 HOH HOH . G 4 HOH A 41 143 34 HOH HOH . G 4 HOH A 42 144 35 HOH HOH . G 4 HOH A 43 145 36 HOH HOH . G 4 HOH A 44 146 37 HOH HOH . G 4 HOH A 45 147 39 HOH HOH . G 4 HOH A 46 148 40 HOH HOH . G 4 HOH A 47 149 42 HOH HOH . G 4 HOH A 48 150 45 HOH HOH . G 4 HOH A 49 151 47 HOH HOH . G 4 HOH A 50 152 51 HOH HOH . G 4 HOH A 51 153 56 HOH HOH . G 4 HOH A 52 154 58 HOH HOH . G 4 HOH A 53 155 69 HOH HOH . G 4 HOH A 54 156 70 HOH HOH . G 4 HOH A 55 157 71 HOH HOH . G 4 HOH A 56 158 73 HOH HOH . G 4 HOH A 57 159 75 HOH HOH . G 4 HOH A 58 160 80 HOH HOH . G 4 HOH A 59 161 94 HOH HOH . G 4 HOH A 60 162 95 HOH HOH . G 4 HOH A 61 163 96 HOH HOH . G 4 HOH A 62 164 98 HOH HOH . G 4 HOH A 63 165 99 HOH HOH . G 4 HOH A 64 166 100 HOH HOH . G 4 HOH A 65 167 102 HOH HOH . H 4 HOH B 1 100 2 HOH HOH . H 4 HOH B 2 101 3 HOH HOH . H 4 HOH B 3 102 4 HOH HOH . H 4 HOH B 4 103 6 HOH HOH . H 4 HOH B 5 104 11 HOH HOH . H 4 HOH B 6 105 13 HOH HOH . H 4 HOH B 7 106 15 HOH HOH . H 4 HOH B 8 107 16 HOH HOH . H 4 HOH B 9 108 23 HOH HOH . H 4 HOH B 10 109 27 HOH HOH . H 4 HOH B 11 110 29 HOH HOH . H 4 HOH B 12 111 30 HOH HOH . H 4 HOH B 13 112 32 HOH HOH . H 4 HOH B 14 113 33 HOH HOH . H 4 HOH B 15 114 38 HOH HOH . H 4 HOH B 16 115 41 HOH HOH . H 4 HOH B 17 116 116 HOH HOH . H 4 HOH B 18 117 117 HOH HOH . H 4 HOH B 19 118 43 HOH HOH . H 4 HOH B 20 119 119 HOH HOH . H 4 HOH B 21 120 120 HOH HOH . H 4 HOH B 22 121 121 HOH HOH . H 4 HOH B 23 122 122 HOH HOH . H 4 HOH B 24 123 123 HOH HOH . H 4 HOH B 25 124 44 HOH HOH . H 4 HOH B 26 125 125 HOH HOH . H 4 HOH B 27 126 46 HOH HOH . H 4 HOH B 28 127 127 HOH HOH . H 4 HOH B 29 128 48 HOH HOH . H 4 HOH B 30 129 49 HOH HOH . H 4 HOH B 31 130 50 HOH HOH . H 4 HOH B 32 131 52 HOH HOH . H 4 HOH B 33 132 53 HOH HOH . H 4 HOH B 34 133 54 HOH HOH . H 4 HOH B 35 134 134 HOH HOH . H 4 HOH B 36 135 135 HOH HOH . H 4 HOH B 37 136 136 HOH HOH . H 4 HOH B 38 137 137 HOH HOH . H 4 HOH B 39 138 55 HOH HOH . H 4 HOH B 40 139 139 HOH HOH . H 4 HOH B 41 140 57 HOH HOH . H 4 HOH B 42 141 59 HOH HOH . H 4 HOH B 43 142 60 HOH HOH . H 4 HOH B 44 143 61 HOH HOH . H 4 HOH B 45 144 62 HOH HOH . H 4 HOH B 46 145 63 HOH HOH . H 4 HOH B 47 146 64 HOH HOH . H 4 HOH B 48 147 65 HOH HOH . H 4 HOH B 49 148 66 HOH HOH . H 4 HOH B 50 149 67 HOH HOH . H 4 HOH B 51 150 68 HOH HOH . H 4 HOH B 52 151 72 HOH HOH . H 4 HOH B 53 152 74 HOH HOH . H 4 HOH B 54 153 76 HOH HOH . H 4 HOH B 55 154 77 HOH HOH . H 4 HOH B 56 155 78 HOH HOH . H 4 HOH B 57 156 79 HOH HOH . H 4 HOH B 58 157 81 HOH HOH . H 4 HOH B 59 158 82 HOH HOH . H 4 HOH B 60 159 83 HOH HOH . H 4 HOH B 61 160 84 HOH HOH . H 4 HOH B 62 161 85 HOH HOH . H 4 HOH B 63 162 86 HOH HOH . H 4 HOH B 64 163 87 HOH HOH . H 4 HOH B 65 164 88 HOH HOH . H 4 HOH B 66 165 89 HOH HOH . H 4 HOH B 67 166 90 HOH HOH . H 4 HOH B 68 167 91 HOH HOH . H 4 HOH B 69 168 92 HOH HOH . H 4 HOH B 70 169 93 HOH HOH . H 4 HOH B 71 170 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F53 . . . F 3 14.296 35.789 18.235 1 22.6 ? C1 F53 200 A 1 HETATM 2 O O1 F53 . . . F 3 14.851 35.86 19.559 1 21.41 ? O1 F53 200 A 1 HETATM 3 C C2 F53 . . . F 3 15.206 34.922 17.379 1 20.22 ? C2 F53 200 A 1 HETATM 4 C C3 F53 . . . F 3 16.236 35.515 16.658 1 19.33 ? C3 F53 200 A 1 HETATM 5 C C4 F53 . . . F 3 17.074 34.725 15.848 1 19.38 ? C4 F53 200 A 1 HETATM 6 C C5 F53 . . . F 3 16.91 33.327 15.755 1 19 ? C5 F53 200 A 1 HETATM 7 C C6 F53 . . . F 3 15.881 32.746 16.516 1 19.32 ? C6 F53 200 A 1 HETATM 8 C C7 F53 . . . F 3 15.021 33.542 17.302 1 20.66 ? C7 F53 200 A 1 HETATM 9 O O8 F53 . . . F 3 22.521 24.606 11.272 1 19.71 ? O8 F53 200 A 1 HETATM 10 S S8 F53 . . . F 3 17.929 32.399 14.872 1 20.16 ? S8 F53 200 A 1 HETATM 11 O O9 F53 . . . F 3 18.597 33.215 13.928 1 20.1 ? O9 F53 200 A 1 HETATM 12 O O10 F53 . . . F 3 17.218 31.289 14.294 1 18.26 ? O10 F53 200 A 1 HETATM 13 N N11 F53 . . . F 3 19.121 31.798 15.794 1 20.01 ? N11 F53 200 A 1 HETATM 14 C C12 F53 . . . F 3 19.781 32.844 16.627 1 21.42 ? C12 F53 200 A 1 HETATM 15 C C13 F53 . . . F 3 21.289 32.632 16.568 1 23.52 ? C13 F53 200 A 1 HETATM 16 C C14 F53 . . . F 3 21.849 32.816 15.156 1 25.05 ? C14 F53 200 A 1 HETATM 17 C C15 F53 . . . F 3 21.975 33.555 17.577 1 23.94 ? C15 F53 200 A 1 HETATM 18 C C16 F53 . . . F 3 18.823 30.498 16.431 1 18.65 ? C16 F53 200 A 1 HETATM 19 C C17 F53 . . . F 3 19.794 29.434 15.881 1 19.85 ? C17 F53 200 A 1 HETATM 20 C C18 F53 . . . F 3 21.803 35.024 17.258 1 24.81 ? C18 F53 200 A 1 HETATM 21 O O18 F53 . . . F 3 19.789 28.243 16.695 1 17.75 ? O18 F53 200 A 1 HETATM 22 C C19 F53 . . . F 3 19.467 29.049 14.433 1 18.63 ? C19 F53 200 A 1 HETATM 23 C C20 F53 . . . F 3 23.33 32.494 15.031 1 25.4 ? C20 F53 200 A 1 HETATM 24 N N20 F53 . . . F 3 20.562 28.257 13.923 1 18.6 ? N20 F53 200 A 1 HETATM 25 C C21 F53 . . . F 3 21.457 28.638 13.01 1 19.74 ? C21 F53 200 A 1 HETATM 26 O O22 F53 . . . F 3 21.555 29.684 12.4 1 20.76 ? O22 F53 200 A 1 HETATM 27 O O23 F53 . . . F 3 22.439 27.609 12.764 1 20.59 ? O23 F53 200 A 1 HETATM 28 C C24 F53 . . . F 3 23.277 27.779 11.629 1 19.79 ? C24 F53 200 A 1 HETATM 29 C C25 F53 . . . F 3 24.591 27.181 12.126 1 19.81 ? C25 F53 200 A 1 HETATM 30 O O26 F53 . . . F 3 24.39 25.776 11.972 1 21.53 ? O26 F53 200 A 1 HETATM 31 C C27 F53 . . . F 3 23.516 25.546 10.872 1 20.27 ? C27 F53 200 A 1 HETATM 32 C C29 F53 . . . F 3 21.237 25.251 11.318 1 21.92 ? C29 F53 200 A 1 HETATM 33 C C30 F53 . . . F 3 21.365 26.49 10.439 1 22.1 ? C30 F53 200 A 1 HETATM 34 C C31 F53 . . . F 3 22.848 26.854 10.511 1 20.15 ? C31 F53 200 A 1 HETATM 35 C C32 F53 . . . F 3 18.19 28.221 14.273 1 18.34 ? C32 F53 200 A 1 HETATM 36 C C33 F53 . . . F 3 18.081 26.589 12.362 1 18.24 ? C33 F53 200 A 1 HETATM 37 C C34 F53 . . . F 3 17.897 26.228 11.032 1 18.72 ? C34 F53 200 A 1 HETATM 38 C C35 F53 . . . F 3 17.565 27.211 10.109 1 18.88 ? C35 F53 200 A 1 HETATM 39 C C36 F53 . . . F 3 17.433 28.525 10.534 1 20.71 ? C36 F53 200 A 1 HETATM 40 C C37 F53 . . . F 3 17.608 28.882 11.881 1 18.65 ? C37 F53 200 A 1 HETATM 41 C C38 F53 . . . F 3 17.96 27.906 12.807 1 18.91 ? C38 F53 200 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 41 #