data_3O9L
#
_model_server_result.job_id            FYI4c06fdELFMt3HvVEZ-g 
_model_server_result.datetime_utc      '2024-10-12 15:28:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":167}' 
#
_entry.id    3O9L 
#
_exptl.entry_id    3O9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3O9L 
_cell.length_a            67.031 
_cell.length_b            90.366 
_cell.length_c            120.774 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,H,I 1 1 
C,D,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 51 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 47 B CYS 217 1_555 B SG CYS 51 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 B SG CYS 89 B CYS 259 1_555 B SG CYS 126 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 C SG CYS 51 C CYS 51 1_555 C SG CYS 58 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 D SG CYS 47 D CYS 217 1_555 D SG CYS 51 D CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 D SG CYS 89 D CYS 259 1_555 D SG CYS 126 D CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 75 A ASN 75 1_555 E C1 NAG . A NAG 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 326 n n 
C1 O1 NAG sing 327 n n 
C1 O5 NAG sing 328 n n 
C1 H1 NAG sing 329 n n 
C2 C3 NAG sing 330 n n 
C2 N2 NAG sing 331 n n 
C2 H2 NAG sing 332 n n 
C3 C4 NAG sing 333 n n 
C3 O3 NAG sing 334 n n 
C3 H3 NAG sing 335 n n 
C4 C5 NAG sing 336 n n 
C4 O4 NAG sing 337 n n 
C4 H4 NAG sing 338 n n 
C5 C6 NAG sing 339 n n 
C5 O5 NAG sing 340 n n 
C5 H5 NAG sing 341 n n 
C6 O6 NAG sing 342 n n 
C6 H61 NAG sing 343 n n 
C6 H62 NAG sing 344 n n 
C7 C8 NAG sing 345 n n 
C7 N2 NAG sing 346 n n 
C7 O7 NAG doub 347 n n 
C8 H81 NAG sing 348 n n 
C8 H82 NAG sing 349 n n 
C8 H83 NAG sing 350 n n 
N2 HN2 NAG sing 351 n n 
O1 HO1 NAG sing 352 n n 
O3 HO3 NAG sing 353 n n 
O4 HO4 NAG sing 354 n n 
O6 HO6 NAG sing 355 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     3O9L 
_atom_sites.fract_transf_matrix[1][1]    0.014918 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00828 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 167 2 NAG NAG . 
F 4 LPN A 1 168 1 LPN LPN . 
G 4 LPN C 1 167 1 LPN LPN . 
H 5 HOH A 1 169 1 HOH HOH . 
H 5 HOH A 2 170 5 HOH HOH . 
H 5 HOH A 3 171 7 HOH HOH . 
H 5 HOH A 4 172 4 HOH HOH . 
H 5 HOH A 5 173 9 HOH HOH . 
H 5 HOH A 6 174 16 HOH HOH . 
H 5 HOH A 7 175 23 HOH HOH . 
H 5 HOH A 8 176 28 HOH HOH . 
H 5 HOH A 9 177 29 HOH HOH . 
H 5 HOH A 10 178 32 HOH HOH . 
H 5 HOH A 11 179 35 HOH HOH . 
H 5 HOH A 12 180 36 HOH HOH . 
I 5 HOH B 1 2 2 HOH HOH . 
I 5 HOH B 2 3 3 HOH HOH . 
I 5 HOH B 3 8 8 HOH HOH . 
I 5 HOH B 4 14 14 HOH HOH . 
I 5 HOH B 5 15 15 HOH HOH . 
I 5 HOH B 6 20 20 HOH HOH . 
I 5 HOH B 7 25 25 HOH HOH . 
I 5 HOH B 8 37 37 HOH HOH . 
I 5 HOH B 9 39 39 HOH HOH . 
J 5 HOH C 1 168 2 HOH HOH . 
J 5 HOH C 2 169 4 HOH HOH . 
J 5 HOH C 3 170 9 HOH HOH . 
J 5 HOH C 4 171 10 HOH HOH . 
J 5 HOH C 5 172 6 HOH HOH . 
J 5 HOH C 6 173 7 HOH HOH . 
J 5 HOH C 7 174 8 HOH HOH . 
J 5 HOH C 8 175 11 HOH HOH . 
J 5 HOH C 9 176 13 HOH HOH . 
J 5 HOH C 10 177 18 HOH HOH . 
J 5 HOH C 11 178 22 HOH HOH . 
J 5 HOH C 12 179 31 HOH HOH . 
J 5 HOH C 13 180 33 HOH HOH . 
K 5 HOH D 1 3 3 HOH HOH . 
K 5 HOH D 2 5 5 HOH HOH . 
K 5 HOH D 3 6 6 HOH HOH . 
K 5 HOH D 4 10 10 HOH HOH . 
K 5 HOH D 5 12 12 HOH HOH . 
K 5 HOH D 6 17 17 HOH HOH . 
K 5 HOH D 7 19 19 HOH HOH . 
K 5 HOH D 8 21 21 HOH HOH . 
K 5 HOH D 9 24 24 HOH HOH . 
K 5 HOH D 10 26 26 HOH HOH . 
K 5 HOH D 11 27 27 HOH HOH . 
K 5 HOH D 12 30 30 HOH HOH . 
K 5 HOH D 13 34 34 HOH HOH . 
K 5 HOH D 14 38 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . E 3 17.946 12.154 -16.53 1 51.89 ? C1 NAG 167 A 1 
HETATM 2 C C2 NAG . . . E 3 18.869 11.917 -17.738 1 54.32 ? C2 NAG 167 A 1 
HETATM 3 C C3 NAG . . . E 3 20.01 10.979 -17.362 1 54.17 ? C3 NAG 167 A 1 
HETATM 4 C C4 NAG . . . E 3 20.761 11.485 -16.132 1 55.74 ? C4 NAG 167 A 1 
HETATM 5 C C5 NAG . . . E 3 19.737 11.582 -15.001 1 55.24 ? C5 NAG 167 A 1 
HETATM 6 C C6 NAG . . . E 3 20.409 11.949 -13.675 1 55.59 ? C6 NAG 167 A 1 
HETATM 7 C C7 NAG . . . E 3 18.057 11.906 -20.067 1 56.23 ? C7 NAG 167 A 1 
HETATM 8 C C8 NAG . . . E 3 17.406 11.089 -21.157 1 56.32 ? C8 NAG 167 A 1 
HETATM 9 N N2 NAG . . . E 3 18.228 11.297 -18.893 1 55.22 ? N2 NAG 167 A 1 
HETATM 10 O O3 NAG . . . E 3 20.852 10.814 -18.477 1 54.21 ? O3 NAG 167 A 1 
HETATM 11 O O4 NAG . . . E 3 21.811 10.598 -15.787 1 56.7 ? O4 NAG 167 A 1 
HETATM 12 O O5 NAG . . . E 3 18.698 12.502 -15.364 1 53.9 ? O5 NAG 167 A 1 
HETATM 13 O O6 NAG . . . E 3 19.623 11.502 -12.585 1 54.81 ? O6 NAG 167 A 1 
HETATM 14 O O7 NAG . . . E 3 18.393 13.076 -20.275 1 55.98 ? O7 NAG 167 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           14 
#