data_3O9L
#
_model_server_result.job_id            S7gZl0dBfsxs1Pu0LsDAAQ 
_model_server_result.datetime_utc      '2024-11-22 04:11:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3o9l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":168}' 
#
_entry.id    3O9L 
#
_exptl.entry_id    3O9L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              660.07 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R,4S)-N-[2-chloro-5-(3-methoxypropyl)benzyl]-N-cyclopropyl-4-{4-[2-(2,6-dichloro-4-methylphenoxy)ethoxy]phenyl}piperidine-3-carboxamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3O9L 
_cell.length_a            67.031 
_cell.length_b            90.366 
_cell.length_c            120.774 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3O9L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,H,I 1 1 
C,D,G,J,K 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 51 A CYS 51 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 B SG CYS 47 B CYS 217 1_555 B SG CYS 51 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf3 B SG CYS 89 B CYS 259 1_555 B SG CYS 126 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
disulf ? disulf4 C SG CYS 51 C CYS 51 1_555 C SG CYS 58 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf5 D SG CYS 47 D CYS 217 1_555 D SG CYS 51 D CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf6 D SG CYS 89 D CYS 259 1_555 D SG CYS 126 D CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
covale ? covale1 A ND2 ASN 75 A ASN 75 1_555 E C1 NAG . A NAG 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? 
#
_chem_comp.formula           'C35 H41 Cl3 N2 O4' 
_chem_comp.formula_weight    660.07 
_chem_comp.id                LPN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R,4S)-N-[2-chloro-5-(3-methoxypropyl)benzyl]-N-cyclopropyl-4-{4-[2-(2,6-dichloro-4-methylphenoxy)ethoxy]phenyl}piperidine-3-carboxamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CL1 C2 LPN sing 194 n n 
C2 C3 LPN doub 195 n y 
C2 C4 LPN sing 196 n y 
C3 O5 LPN sing 197 n n 
C3 C6 LPN sing 198 n y 
C4 C7 LPN doub 199 n y 
O5 C8 LPN sing 200 n n 
C6 CL9 LPN sing 201 n n 
C6 C10 LPN doub 202 n y 
C7 C10 LPN sing 203 n y 
C7 C11 LPN sing 204 n n 
C8 C12 LPN sing 205 n n 
C12 O13 LPN sing 206 n n 
O13 C14 LPN sing 207 n n 
C14 C15 LPN doub 208 n y 
C14 C16 LPN sing 209 n y 
C15 C17 LPN sing 210 n y 
C16 C18 LPN doub 211 n y 
C17 C19 LPN doub 212 n y 
C18 C19 LPN sing 213 n y 
C19 C20 LPN sing 214 n n 
C20 C21 LPN sing 215 n n 
C20 C22 LPN sing 216 n n 
C21 C23 LPN sing 217 n n 
C21 C24 LPN sing 218 n n 
C22 C25 LPN sing 219 n n 
C23 O26 LPN doub 220 n n 
C23 N27 LPN sing 221 n n 
C24 N28 LPN sing 222 n n 
C25 N28 LPN sing 223 n n 
N27 C29 LPN sing 224 n n 
N27 C30 LPN sing 225 n n 
C29 C31 LPN sing 226 n n 
C29 C32 LPN sing 227 n n 
C30 C33 LPN sing 228 n n 
C31 C32 LPN sing 229 n n 
C33 C34 LPN doub 230 n y 
C33 C35 LPN sing 231 n y 
C34 CL36 LPN sing 232 n n 
C34 C37 LPN sing 233 n y 
C35 C38 LPN doub 234 n y 
C37 C39 LPN doub 235 n y 
C38 C39 LPN sing 236 n y 
C38 C40 LPN sing 237 n n 
C40 C41 LPN sing 238 n n 
C41 C42 LPN sing 239 n n 
C42 O43 LPN sing 240 n n 
O43 C44 LPN sing 241 n n 
C4 H4 LPN sing 242 n n 
C8 H8 LPN sing 243 n n 
C8 H8A LPN sing 244 n n 
C10 H10 LPN sing 245 n n 
C11 H11 LPN sing 246 n n 
C11 H11A LPN sing 247 n n 
C11 H11B LPN sing 248 n n 
C12 H12 LPN sing 249 n n 
C12 H12A LPN sing 250 n n 
C15 H15 LPN sing 251 n n 
C16 H16 LPN sing 252 n n 
C17 H17 LPN sing 253 n n 
C18 H18 LPN sing 254 n n 
C20 H20 LPN sing 255 n n 
C21 H21 LPN sing 256 n n 
C22 H22 LPN sing 257 n n 
C22 H22A LPN sing 258 n n 
C24 H24 LPN sing 259 n n 
C24 H24A LPN sing 260 n n 
C25 H25 LPN sing 261 n n 
C25 H25A LPN sing 262 n n 
N28 HN28 LPN sing 263 n n 
C29 H29 LPN sing 264 n n 
C30 H30 LPN sing 265 n n 
C30 H30A LPN sing 266 n n 
C31 H31 LPN sing 267 n n 
C31 H31A LPN sing 268 n n 
C32 H32 LPN sing 269 n n 
C32 H32A LPN sing 270 n n 
C35 H35 LPN sing 271 n n 
C37 H37 LPN sing 272 n n 
C39 H39 LPN sing 273 n n 
C40 H40 LPN sing 274 n n 
C40 H40A LPN sing 275 n n 
C41 H41 LPN sing 276 n n 
C41 H41A LPN sing 277 n n 
C42 H42 LPN sing 278 n n 
C42 H42A LPN sing 279 n n 
C44 H44 LPN sing 280 n n 
C44 H44A LPN sing 281 n n 
C44 H44B LPN sing 282 n n 
#
_atom_sites.entry_id                     3O9L 
_atom_sites.fract_transf_matrix[1][1]    0.014918 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011066 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00828 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 NAG A 1 167 2 NAG NAG . 
F 4 LPN A 1 168 1 LPN LPN . 
G 4 LPN C 1 167 1 LPN LPN . 
H 5 HOH A 1 169 1 HOH HOH . 
H 5 HOH A 2 170 5 HOH HOH . 
H 5 HOH A 3 171 7 HOH HOH . 
H 5 HOH A 4 172 4 HOH HOH . 
H 5 HOH A 5 173 9 HOH HOH . 
H 5 HOH A 6 174 16 HOH HOH . 
H 5 HOH A 7 175 23 HOH HOH . 
H 5 HOH A 8 176 28 HOH HOH . 
H 5 HOH A 9 177 29 HOH HOH . 
H 5 HOH A 10 178 32 HOH HOH . 
H 5 HOH A 11 179 35 HOH HOH . 
H 5 HOH A 12 180 36 HOH HOH . 
I 5 HOH B 1 2 2 HOH HOH . 
I 5 HOH B 2 3 3 HOH HOH . 
I 5 HOH B 3 8 8 HOH HOH . 
I 5 HOH B 4 14 14 HOH HOH . 
I 5 HOH B 5 15 15 HOH HOH . 
I 5 HOH B 6 20 20 HOH HOH . 
I 5 HOH B 7 25 25 HOH HOH . 
I 5 HOH B 8 37 37 HOH HOH . 
I 5 HOH B 9 39 39 HOH HOH . 
J 5 HOH C 1 168 2 HOH HOH . 
J 5 HOH C 2 169 4 HOH HOH . 
J 5 HOH C 3 170 9 HOH HOH . 
J 5 HOH C 4 171 10 HOH HOH . 
J 5 HOH C 5 172 6 HOH HOH . 
J 5 HOH C 6 173 7 HOH HOH . 
J 5 HOH C 7 174 8 HOH HOH . 
J 5 HOH C 8 175 11 HOH HOH . 
J 5 HOH C 9 176 13 HOH HOH . 
J 5 HOH C 10 177 18 HOH HOH . 
J 5 HOH C 11 178 22 HOH HOH . 
J 5 HOH C 12 179 31 HOH HOH . 
J 5 HOH C 13 180 33 HOH HOH . 
K 5 HOH D 1 3 3 HOH HOH . 
K 5 HOH D 2 5 5 HOH HOH . 
K 5 HOH D 3 6 6 HOH HOH . 
K 5 HOH D 4 10 10 HOH HOH . 
K 5 HOH D 5 12 12 HOH HOH . 
K 5 HOH D 6 17 17 HOH HOH . 
K 5 HOH D 7 19 19 HOH HOH . 
K 5 HOH D 8 21 21 HOH HOH . 
K 5 HOH D 9 24 24 HOH HOH . 
K 5 HOH D 10 26 26 HOH HOH . 
K 5 HOH D 11 27 27 HOH HOH . 
K 5 HOH D 12 30 30 HOH HOH . 
K 5 HOH D 13 34 34 HOH HOH . 
K 5 HOH D 14 38 38 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 CL CL1 LPN . . . F 4 3.17 8.552 -5.85 1 52.79 ? CL1 LPN 168 A 1 
HETATM 2 C C2 LPN . . . F 4 2.45 8.128 -4.277 1 51.67 ? C2 LPN 168 A 1 
HETATM 3 C C3 LPN . . . F 4 3.227 7.657 -3.224 1 51.25 ? C3 LPN 168 A 1 
HETATM 4 C C4 LPN . . . F 4 1.072 8.284 -4.149 1 52.02 ? C4 LPN 168 A 1 
HETATM 5 O O5 LPN . . . F 4 4.605 7.475 -3.305 1 48.82 ? O5 LPN 168 A 1 
HETATM 6 C C6 LPN . . . F 4 2.573 7.37 -2.034 1 52.73 ? C6 LPN 168 A 1 
HETATM 7 C C7 LPN . . . F 4 0.435 7.979 -2.955 1 51.75 ? C7 LPN 168 A 1 
HETATM 8 C C8 LPN . . . F 4 5.224 6.465 -4.144 1 45.47 ? C8 LPN 168 A 1 
HETATM 9 CL CL9 LPN . . . F 4 3.552 6.776 -0.674 1 55.31 ? CL9 LPN 168 A 1 
HETATM 10 C C10 LPN . . . F 4 1.191 7.52 -1.879 1 52.64 ? C10 LPN 168 A 1 
HETATM 11 C C11 LPN . . . F 4 -1.048 8.16 -2.838 1 51.02 ? C11 LPN 168 A 1 
HETATM 12 C C12 LPN . . . F 4 6.169 5.47 -3.442 1 42.31 ? C12 LPN 168 A 1 
HETATM 13 O O13 LPN . . . F 4 5.782 5.546 -2.093 1 40.42 ? O13 LPN 168 A 1 
HETATM 14 C C14 LPN . . . F 4 6.328 5.3 -0.86 1 39.97 ? C14 LPN 168 A 1 
HETATM 15 C C15 LPN . . . F 4 7.271 6.207 -0.366 1 38.09 ? C15 LPN 168 A 1 
HETATM 16 C C16 LPN . . . F 4 5.843 4.277 -0.04 1 39.27 ? C16 LPN 168 A 1 
HETATM 17 C C17 LPN . . . F 4 7.783 6.059 0.923 1 39.63 ? C17 LPN 168 A 1 
HETATM 18 C C18 LPN . . . F 4 6.364 4.124 1.243 1 38.35 ? C18 LPN 168 A 1 
HETATM 19 C C19 LPN . . . F 4 7.34 5.007 1.738 1 38.69 ? C19 LPN 168 A 1 
HETATM 20 C C20 LPN . . . F 4 7.818 4.841 3.153 1 37.55 ? C20 LPN 168 A 1 
HETATM 21 C C21 LPN . . . F 4 6.844 5.65 4.074 1 36.71 ? C21 LPN 168 A 1 
HETATM 22 C C22 LPN . . . F 4 9.287 5.205 3.403 1 36.63 ? C22 LPN 168 A 1 
HETATM 23 C C23 LPN . . . F 4 5.412 5.22 3.788 1 35.64 ? C23 LPN 168 A 1 
HETATM 24 C C24 LPN . . . F 4 7.198 5.521 5.565 1 35.1 ? C24 LPN 168 A 1 
HETATM 25 C C25 LPN . . . F 4 9.613 5.165 4.902 1 38.06 ? C25 LPN 168 A 1 
HETATM 26 O O26 LPN . . . F 4 5.027 4.139 4.198 1 35.24 ? O26 LPN 168 A 1 
HETATM 27 N N27 LPN . . . F 4 4.557 5.974 3.069 1 35.88 ? N27 LPN 168 A 1 
HETATM 28 N N28 LPN . . . F 4 8.609 5.831 5.749 1 36.42 ? N28 LPN 168 A 1 
HETATM 29 C C29 LPN . . . F 4 4.865 7.273 2.428 1 33.27 ? C29 LPN 168 A 1 
HETATM 30 C C30 LPN . . . F 4 3.221 5.49 2.721 1 37.79 ? C30 LPN 168 A 1 
HETATM 31 C C31 LPN . . . F 4 5.218 8.337 3.461 1 32.49 ? C31 LPN 168 A 1 
HETATM 32 C C32 LPN . . . F 4 3.824 8.294 2.859 1 31 ? C32 LPN 168 A 1 
HETATM 33 C C33 LPN . . . F 4 2.053 5.793 3.639 1 40.4 ? C33 LPN 168 A 1 
HETATM 34 C C34 LPN . . . F 4 0.779 5.568 3.13 1 41.12 ? C34 LPN 168 A 1 
HETATM 35 C C35 LPN . . . F 4 2.204 6.288 4.931 1 38.51 ? C35 LPN 168 A 1 
HETATM 36 CL CL36 LPN . . . F 4 0.599 4.949 1.469 1 44.31 ? CL36 LPN 168 A 1 
HETATM 37 C C37 LPN . . . F 4 -0.362 5.827 3.872 1 40.66 ? C37 LPN 168 A 1 
HETATM 38 C C38 LPN . . . F 4 1.06 6.543 5.682 1 37.83 ? C38 LPN 168 A 1 
HETATM 39 C C39 LPN . . . F 4 -0.209 6.316 5.164 1 39.73 ? C39 LPN 168 A 1 
HETATM 40 C C40 LPN . . . F 4 1.173 7.094 7.075 1 37.51 ? C40 LPN 168 A 1 
HETATM 41 C C41 LPN . . . F 4 1.07 8.605 6.945 1 35.54 ? C41 LPN 168 A 1 
HETATM 42 C C42 LPN . . . F 4 1.942 9.25 8.005 1 37.52 ? C42 LPN 168 A 1 
HETATM 43 O O43 LPN . . . F 4 2.112 10.622 7.673 1 38.49 ? O43 LPN 168 A 1 
HETATM 44 C C44 LPN . . . F 4 2.1 11.45 8.833 1 39.31 ? C44 LPN 168 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           44 
#