data_3OAF # _model_server_result.job_id '_EgTC8kC6h7GbIVnbG42xg' _model_server_result.datetime_utc '2024-11-06 23:52:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oaf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":187}' # _entry.id 3OAF # _exptl.entry_id 3OAF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.191 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-{[(2,5-dichlorophenyl)amino]methyl}pyrido[2,3-d]pyrimidine-2,4-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OAF _cell.length_a 84.128 _cell.length_b 84.128 _cell.length_c 78.311 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OAF _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H12 Cl2 N6' _chem_comp.formula_weight 335.191 _chem_comp.id OAG _chem_comp.mon_nstd_flag . _chem_comp.name 6-{[(2,5-dichlorophenyl)amino]methyl}pyrido[2,3-d]pyrimidine-2,4-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C10 C1 OAG sing 237 n n C1 N1 OAG sing 238 n n C1 H1 OAG sing 239 n n C1 H1A OAG sing 240 n n N1 C1' OAG sing 241 n n N1 HN1 OAG sing 242 n n C11 CL2 OAG sing 243 n n CL5 C5' OAG sing 244 n n C4A C9 OAG doub 245 n y C9 C10 OAG sing 246 n y C9 H9 OAG sing 247 n n C6' C1' OAG doub 248 n y C1' C11 OAG sing 249 n y C2' N1' OAG doub 250 n y N1' C8A OAG sing 251 n y C7' C10 OAG doub 252 n y C11 C3' OAG doub 253 n y C5' C12 OAG doub 254 n y C12 C3' OAG sing 255 n y C12 H12 OAG sing 256 n n N2' C2' OAG sing 257 n n C2' N3' OAG sing 258 n y N2' HN2' OAG sing 259 n n N2' HN2A OAG sing 260 n n C3' H3' OAG sing 261 n n N3' C4' OAG doub 262 n y C4' C4A OAG sing 263 n y C4' N4' OAG sing 264 n n N4' HN4' OAG sing 265 n n N4' HN4A OAG sing 266 n n C8A C4A OAG sing 267 n y C6' C5' OAG sing 268 n y C6' H6' OAG sing 269 n n N8' C7' OAG sing 270 n y C7' H7' OAG sing 271 n n C8A N8' OAG doub 272 n y # _atom_sites.entry_id 3OAF _atom_sites.fract_transf_matrix[1][1] 0.011887 _atom_sites.fract_transf_matrix[1][2] 0.006863 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01277 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAG A 1 187 1 OAG OAG . C 3 SO4 A 1 188 1 SO4 SO4 . D 3 SO4 A 1 189 2 SO4 SO4 . E 3 SO4 A 1 190 3 SO4 SO4 . F 3 SO4 A 1 191 4 SO4 SO4 . G 3 SO4 A 1 192 5 SO4 SO4 . H 4 HOH A 1 193 1 HOH HOH . H 4 HOH A 2 194 3 HOH HOH . H 4 HOH A 3 195 4 HOH HOH . H 4 HOH A 4 196 5 HOH HOH . H 4 HOH A 5 197 6 HOH HOH . H 4 HOH A 6 198 7 HOH HOH . H 4 HOH A 7 199 8 HOH HOH . H 4 HOH A 8 200 9 HOH HOH . H 4 HOH A 9 201 10 HOH HOH . H 4 HOH A 10 202 11 HOH HOH . H 4 HOH A 11 203 12 HOH HOH . H 4 HOH A 12 204 13 HOH HOH . H 4 HOH A 13 205 14 HOH HOH . H 4 HOH A 14 206 15 HOH HOH . H 4 HOH A 15 207 16 HOH HOH . H 4 HOH A 16 208 17 HOH HOH . H 4 HOH A 17 209 18 HOH HOH . H 4 HOH A 18 210 19 HOH HOH . H 4 HOH A 19 211 20 HOH HOH . H 4 HOH A 20 212 21 HOH HOH . H 4 HOH A 21 213 22 HOH HOH . H 4 HOH A 22 214 23 HOH HOH . H 4 HOH A 23 215 24 HOH HOH . H 4 HOH A 24 216 25 HOH HOH . H 4 HOH A 25 217 26 HOH HOH . H 4 HOH A 26 218 27 HOH HOH . H 4 HOH A 27 219 28 HOH HOH . H 4 HOH A 28 220 29 HOH HOH . H 4 HOH A 29 221 30 HOH HOH . H 4 HOH A 30 222 31 HOH HOH . H 4 HOH A 31 223 32 HOH HOH . H 4 HOH A 32 224 33 HOH HOH . H 4 HOH A 33 225 34 HOH HOH . H 4 HOH A 34 226 35 HOH HOH . H 4 HOH A 35 227 37 HOH HOH . H 4 HOH A 36 228 38 HOH HOH . H 4 HOH A 37 229 39 HOH HOH . H 4 HOH A 38 230 42 HOH HOH . H 4 HOH A 39 231 43 HOH HOH . H 4 HOH A 40 232 45 HOH HOH . H 4 HOH A 41 233 47 HOH HOH . H 4 HOH A 42 234 48 HOH HOH . H 4 HOH A 43 235 49 HOH HOH . H 4 HOH A 44 236 50 HOH HOH . H 4 HOH A 45 237 51 HOH HOH . H 4 HOH A 46 238 52 HOH HOH . H 4 HOH A 47 239 53 HOH HOH . H 4 HOH A 48 240 54 HOH HOH . H 4 HOH A 49 241 55 HOH HOH . H 4 HOH A 50 242 56 HOH HOH . H 4 HOH A 51 243 57 HOH HOH . H 4 HOH A 52 244 58 HOH HOH . H 4 HOH A 53 245 59 HOH HOH . H 4 HOH A 54 246 60 HOH HOH . H 4 HOH A 55 247 61 HOH HOH . H 4 HOH A 56 248 62 HOH HOH . H 4 HOH A 57 249 63 HOH HOH . H 4 HOH A 58 250 64 HOH HOH . H 4 HOH A 59 251 65 HOH HOH . H 4 HOH A 60 252 66 HOH HOH . H 4 HOH A 61 253 67 HOH HOH . H 4 HOH A 62 254 68 HOH HOH . H 4 HOH A 63 255 69 HOH HOH . H 4 HOH A 64 256 70 HOH HOH . H 4 HOH A 65 257 71 HOH HOH . H 4 HOH A 66 258 72 HOH HOH . H 4 HOH A 67 259 73 HOH HOH . H 4 HOH A 68 260 74 HOH HOH . H 4 HOH A 69 261 75 HOH HOH . H 4 HOH A 70 262 76 HOH HOH . H 4 HOH A 71 263 77 HOH HOH . H 4 HOH A 72 264 78 HOH HOH . H 4 HOH A 73 265 79 HOH HOH . H 4 HOH A 74 266 80 HOH HOH . H 4 HOH A 75 267 81 HOH HOH . H 4 HOH A 76 268 82 HOH HOH . H 4 HOH A 77 269 83 HOH HOH . H 4 HOH A 78 270 84 HOH HOH . H 4 HOH A 79 271 85 HOH HOH . H 4 HOH A 80 272 86 HOH HOH . H 4 HOH A 81 273 87 HOH HOH . H 4 HOH A 82 274 88 HOH HOH . H 4 HOH A 83 275 89 HOH HOH . H 4 HOH A 84 276 90 HOH HOH . H 4 HOH A 85 277 91 HOH HOH . H 4 HOH A 86 278 92 HOH HOH . H 4 HOH A 87 279 93 HOH HOH . H 4 HOH A 88 280 94 HOH HOH . H 4 HOH A 89 281 95 HOH HOH . H 4 HOH A 90 282 96 HOH HOH . H 4 HOH A 91 283 97 HOH HOH . H 4 HOH A 92 284 98 HOH HOH . H 4 HOH A 93 285 99 HOH HOH . H 4 HOH A 94 286 100 HOH HOH . H 4 HOH A 95 287 101 HOH HOH . H 4 HOH A 96 288 102 HOH HOH . H 4 HOH A 97 289 103 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 OAG . . . B 2 -2.969 -15.106 -1.629 1 37.65 ? C1 OAG 187 A 1 HETATM 2 N N1 OAG . . . B 2 -2.378 -13.71 -1.636 1 40.13 ? N1 OAG 187 A 1 HETATM 3 CL CL2 OAG . . . B 2 -2.254 -10.605 -0.692 1 55.88 ? CL2 OAG 187 A 1 HETATM 4 CL CL5 OAG . . . B 2 -6.763 -13.78 -3.58 1 47.94 ? CL5 OAG 187 A 1 HETATM 5 C C9 OAG . . . B 2 -2.847 -17.116 -0.086 1 30.05 ? C9 OAG 187 A 1 HETATM 6 C C1' OAG . . . B 2 -3.387 -12.859 -1.837 1 44.77 ? C1' OAG 187 A 1 HETATM 7 N N1' OAG . . . B 2 -3.31 -17.521 3.498 1 16.19 ? N1' OAG 187 A 1 HETATM 8 C C10 OAG . . . B 2 -3.089 -15.744 -0.203 1 29.36 ? C10 OAG 187 A 1 HETATM 9 C C11 OAG . . . B 2 -3.52 -11.487 -1.493 1 47.1 ? C11 OAG 187 A 1 HETATM 10 C C12 OAG . . . B 2 -5.764 -11.45 -2.446 1 46.21 ? C12 OAG 187 A 1 HETATM 11 C C2' OAG . . . B 2 -3.077 -18.835 3.626 1 12.68 ? C2' OAG 187 A 1 HETATM 12 N N2' OAG . . . B 2 -3.071 -19.402 4.88 1 12.96 ? N2' OAG 187 A 1 HETATM 13 C C3' OAG . . . B 2 -4.708 -10.803 -1.792 1 45.11 ? C3' OAG 187 A 1 HETATM 14 N N3' OAG . . . B 2 -2.76 -19.583 2.546 1 9.86 ? N3' OAG 187 A 1 HETATM 15 C C4' OAG . . . B 2 -2.747 -19.125 1.31 1 13.96 ? C4' OAG 187 A 1 HETATM 16 N N4' OAG . . . B 2 -2.46 -19.941 0.306 1 17.67 ? N4' OAG 187 A 1 HETATM 17 C C4A OAG . . . B 2 -2.925 -17.734 1.167 1 20.35 ? C4A OAG 187 A 1 HETATM 18 C C5' OAG . . . B 2 -5.598 -12.799 -2.789 1 46.92 ? C5' OAG 187 A 1 HETATM 19 C C6' OAG . . . B 2 -4.438 -13.479 -2.475 1 45.62 ? C6' OAG 187 A 1 HETATM 20 C C7' OAG . . . B 2 -3.385 -15.014 0.967 1 31.2 ? C7' OAG 187 A 1 HETATM 21 N N8' OAG . . . B 2 -3.464 -15.584 2.179 1 21.79 ? N8' OAG 187 A 1 HETATM 22 C C8A OAG . . . B 2 -3.218 -16.929 2.29 1 19.29 ? C8A OAG 187 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #