data_3OAG # _model_server_result.job_id sgcKtVgK15C2XYOSexcjWw _model_server_result.datetime_utc '2025-07-04 08:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":166}' # _entry.id 3OAG # _exptl.entry_id 3OAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 3 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OAG _cell.length_a 66.57 _cell.length_b 93.633 _cell.length_c 117.896 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 51 A CYS 51 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? disulf ? disulf2 B SG CYS 47 B CYS 217 1_555 B SG CYS 51 B CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 B SG CYS 89 B CYS 259 1_555 B SG CYS 126 B CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf4 C SG CYS 51 C CYS 51 1_555 C SG CYS 58 C CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 D SG CYS 47 D CYS 217 1_555 D SG CYS 51 D CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 D SG CYS 89 D CYS 259 1_555 D SG CYS 126 D CYS 296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? covale ? covale1 A ND2 ASN 75 A ASN 75 1_555 E C1 NAG . A NAG 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale2 C ND2 ASN 5 C ASN 5 1_555 G C1 NAG . C NAG 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 325 n n C1 O1 NAG sing 326 n n C1 O5 NAG sing 327 n n C1 H1 NAG sing 328 n n C2 C3 NAG sing 329 n n C2 N2 NAG sing 330 n n C2 H2 NAG sing 331 n n C3 C4 NAG sing 332 n n C3 O3 NAG sing 333 n n C3 H3 NAG sing 334 n n C4 C5 NAG sing 335 n n C4 O4 NAG sing 336 n n C4 H4 NAG sing 337 n n C5 C6 NAG sing 338 n n C5 O5 NAG sing 339 n n C5 H5 NAG sing 340 n n C6 O6 NAG sing 341 n n C6 H61 NAG sing 342 n n C6 H62 NAG sing 343 n n C7 C8 NAG sing 344 n n C7 N2 NAG sing 345 n n C7 O7 NAG doub 346 n n C8 H81 NAG sing 347 n n C8 H82 NAG sing 348 n n C8 H83 NAG sing 349 n n N2 HN2 NAG sing 350 n n O1 HO1 NAG sing 351 n n O3 HO3 NAG sing 352 n n O4 HO4 NAG sing 353 n n O6 HO6 NAG sing 354 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3OAG _atom_sites.fract_transf_matrix[1][1] 0.015022 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01068 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 NAG A 1 166 2 NAG NAG . F 4 LPQ A 1 167 1 LPQ LPQ . G 3 NAG C 1 166 2 NAG NAG . H 4 LPQ C 1 167 1 LPQ LPQ . I 5 HOH A 1 168 2 HOH HOH . I 5 HOH A 2 169 3 HOH HOH . I 5 HOH A 3 170 170 HOH HOH . I 5 HOH A 4 171 171 HOH HOH . I 5 HOH A 5 172 6 HOH HOH . I 5 HOH A 6 173 173 HOH HOH . I 5 HOH A 7 174 174 HOH HOH . I 5 HOH A 8 175 175 HOH HOH . I 5 HOH A 9 176 7 HOH HOH . I 5 HOH A 10 177 8 HOH HOH . I 5 HOH A 11 178 10 HOH HOH . I 5 HOH A 12 179 179 HOH HOH . I 5 HOH A 13 180 11 HOH HOH . I 5 HOH A 14 181 12 HOH HOH . I 5 HOH A 15 182 15 HOH HOH . I 5 HOH A 16 183 183 HOH HOH . I 5 HOH A 17 184 21 HOH HOH . I 5 HOH A 18 185 23 HOH HOH . I 5 HOH A 19 186 24 HOH HOH . I 5 HOH A 20 187 187 HOH HOH . I 5 HOH A 21 188 30 HOH HOH . I 5 HOH A 22 189 31 HOH HOH . I 5 HOH A 23 190 32 HOH HOH . I 5 HOH A 24 191 36 HOH HOH . I 5 HOH A 25 192 39 HOH HOH . I 5 HOH A 26 193 41 HOH HOH . I 5 HOH A 27 194 42 HOH HOH . I 5 HOH A 28 195 195 HOH HOH . I 5 HOH A 29 196 49 HOH HOH . I 5 HOH A 30 197 54 HOH HOH . I 5 HOH A 31 198 61 HOH HOH . I 5 HOH A 32 199 62 HOH HOH . I 5 HOH A 33 200 64 HOH HOH . I 5 HOH A 34 201 70 HOH HOH . I 5 HOH A 35 202 71 HOH HOH . I 5 HOH A 36 203 73 HOH HOH . I 5 HOH A 37 204 80 HOH HOH . I 5 HOH A 38 205 84 HOH HOH . I 5 HOH A 39 206 85 HOH HOH . I 5 HOH A 40 207 90 HOH HOH . I 5 HOH A 41 208 95 HOH HOH . I 5 HOH A 42 209 96 HOH HOH . I 5 HOH A 43 210 98 HOH HOH . I 5 HOH A 44 211 99 HOH HOH . I 5 HOH A 45 212 100 HOH HOH . I 5 HOH A 46 213 103 HOH HOH . I 5 HOH A 47 214 112 HOH HOH . I 5 HOH A 48 215 117 HOH HOH . I 5 HOH A 49 216 129 HOH HOH . I 5 HOH A 50 217 133 HOH HOH . I 5 HOH A 51 218 140 HOH HOH . I 5 HOH A 52 219 155 HOH HOH . I 5 HOH A 53 220 160 HOH HOH . I 5 HOH A 54 221 162 HOH HOH . I 5 HOH A 55 222 163 HOH HOH . J 5 HOH B 1 9 9 HOH HOH . J 5 HOH B 2 13 13 HOH HOH . J 5 HOH B 3 22 22 HOH HOH . J 5 HOH B 4 25 25 HOH HOH . J 5 HOH B 5 28 28 HOH HOH . J 5 HOH B 6 29 29 HOH HOH . J 5 HOH B 7 33 33 HOH HOH . J 5 HOH B 8 34 34 HOH HOH . J 5 HOH B 9 35 35 HOH HOH . J 5 HOH B 10 38 38 HOH HOH . J 5 HOH B 11 51 51 HOH HOH . J 5 HOH B 12 52 52 HOH HOH . J 5 HOH B 13 57 57 HOH HOH . J 5 HOH B 14 58 58 HOH HOH . J 5 HOH B 15 60 60 HOH HOH . J 5 HOH B 16 66 66 HOH HOH . J 5 HOH B 17 75 75 HOH HOH . J 5 HOH B 18 79 79 HOH HOH . J 5 HOH B 19 81 81 HOH HOH . J 5 HOH B 20 82 82 HOH HOH . J 5 HOH B 21 87 87 HOH HOH . J 5 HOH B 22 91 91 HOH HOH . J 5 HOH B 23 92 92 HOH HOH . J 5 HOH B 24 102 102 HOH HOH . J 5 HOH B 25 104 104 HOH HOH . J 5 HOH B 26 109 109 HOH HOH . J 5 HOH B 27 110 110 HOH HOH . J 5 HOH B 28 123 123 HOH HOH . J 5 HOH B 29 124 124 HOH HOH . J 5 HOH B 30 135 135 HOH HOH . J 5 HOH B 31 138 138 HOH HOH . J 5 HOH B 32 152 152 HOH HOH . J 5 HOH B 33 156 156 HOH HOH . J 5 HOH B 34 157 157 HOH HOH . J 5 HOH B 35 158 158 HOH HOH . J 5 HOH B 36 161 161 HOH HOH . J 5 HOH B 37 169 169 HOH HOH . J 5 HOH B 38 347 176 HOH HOH . J 5 HOH B 39 348 178 HOH HOH . J 5 HOH B 40 349 182 HOH HOH . J 5 HOH B 41 350 186 HOH HOH . J 5 HOH B 42 351 189 HOH HOH . J 5 HOH B 43 352 192 HOH HOH . K 5 HOH C 1 168 168 HOH HOH . K 5 HOH C 2 169 4 HOH HOH . K 5 HOH C 3 170 17 HOH HOH . K 5 HOH C 4 171 19 HOH HOH . K 5 HOH C 5 172 172 HOH HOH . K 5 HOH C 6 173 26 HOH HOH . K 5 HOH C 7 174 27 HOH HOH . K 5 HOH C 8 175 37 HOH HOH . K 5 HOH C 9 176 40 HOH HOH . K 5 HOH C 10 177 46 HOH HOH . K 5 HOH C 11 178 47 HOH HOH . K 5 HOH C 12 179 50 HOH HOH . K 5 HOH C 13 180 180 HOH HOH . K 5 HOH C 14 181 53 HOH HOH . K 5 HOH C 15 182 55 HOH HOH . K 5 HOH C 16 183 59 HOH HOH . K 5 HOH C 17 184 67 HOH HOH . K 5 HOH C 18 185 72 HOH HOH . K 5 HOH C 19 186 86 HOH HOH . K 5 HOH C 20 187 89 HOH HOH . K 5 HOH C 21 188 93 HOH HOH . K 5 HOH C 22 189 97 HOH HOH . K 5 HOH C 23 190 105 HOH HOH . K 5 HOH C 24 191 106 HOH HOH . K 5 HOH C 25 192 107 HOH HOH . K 5 HOH C 26 193 108 HOH HOH . K 5 HOH C 27 194 113 HOH HOH . K 5 HOH C 28 195 118 HOH HOH . K 5 HOH C 29 196 196 HOH HOH . K 5 HOH C 30 197 120 HOH HOH . K 5 HOH C 31 198 121 HOH HOH . K 5 HOH C 32 199 127 HOH HOH . K 5 HOH C 33 200 130 HOH HOH . K 5 HOH C 34 201 139 HOH HOH . K 5 HOH C 35 202 141 HOH HOH . K 5 HOH C 36 203 144 HOH HOH . K 5 HOH C 37 204 146 HOH HOH . K 5 HOH C 38 205 147 HOH HOH . K 5 HOH C 39 206 148 HOH HOH . K 5 HOH C 40 207 150 HOH HOH . K 5 HOH C 41 208 151 HOH HOH . K 5 HOH C 42 209 153 HOH HOH . K 5 HOH C 43 210 159 HOH HOH . K 5 HOH C 44 211 165 HOH HOH . K 5 HOH C 45 212 166 HOH HOH . L 5 HOH D 1 1 1 HOH HOH . L 5 HOH D 2 14 14 HOH HOH . L 5 HOH D 3 16 16 HOH HOH . L 5 HOH D 4 18 18 HOH HOH . L 5 HOH D 5 20 20 HOH HOH . L 5 HOH D 6 43 43 HOH HOH . L 5 HOH D 7 44 44 HOH HOH . L 5 HOH D 8 48 48 HOH HOH . L 5 HOH D 9 63 63 HOH HOH . L 5 HOH D 10 65 65 HOH HOH . L 5 HOH D 11 68 68 HOH HOH . L 5 HOH D 12 69 69 HOH HOH . L 5 HOH D 13 76 76 HOH HOH . L 5 HOH D 14 78 78 HOH HOH . L 5 HOH D 15 83 83 HOH HOH . L 5 HOH D 16 88 88 HOH HOH . L 5 HOH D 17 94 94 HOH HOH . L 5 HOH D 18 101 101 HOH HOH . L 5 HOH D 19 111 111 HOH HOH . L 5 HOH D 20 114 114 HOH HOH . L 5 HOH D 21 115 115 HOH HOH . L 5 HOH D 22 116 116 HOH HOH . L 5 HOH D 23 119 119 HOH HOH . L 5 HOH D 24 122 122 HOH HOH . L 5 HOH D 25 125 125 HOH HOH . L 5 HOH D 26 126 126 HOH HOH . L 5 HOH D 27 128 128 HOH HOH . L 5 HOH D 28 131 131 HOH HOH . L 5 HOH D 29 132 132 HOH HOH . L 5 HOH D 30 136 136 HOH HOH . L 5 HOH D 31 137 137 HOH HOH . L 5 HOH D 32 142 142 HOH HOH . L 5 HOH D 33 149 149 HOH HOH . L 5 HOH D 34 154 154 HOH HOH . L 5 HOH D 35 347 185 HOH HOH . L 5 HOH D 36 348 188 HOH HOH . L 5 HOH D 37 349 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 3 16.066 -13.606 -16.782 1 61.42 ? C1 NAG 166 A 1 HETATM 2 C C2 NAG . . . E 3 15.131 -13.335 -17.961 1 64.73 ? C2 NAG 166 A 1 HETATM 3 C C3 NAG . . . E 3 13.98 -12.431 -17.515 1 65.22 ? C3 NAG 166 A 1 HETATM 4 C C4 NAG . . . E 3 13.229 -13.063 -16.335 1 65.62 ? C4 NAG 166 A 1 HETATM 5 C C5 NAG . . . E 3 14.167 -13.652 -15.271 1 65.27 ? C5 NAG 166 A 1 HETATM 6 C C6 NAG . . . E 3 13.387 -14.626 -14.387 1 66.54 ? C6 NAG 166 A 1 HETATM 7 C C7 NAG . . . E 3 15.769 -13.389 -20.308 1 67.39 ? C7 NAG 166 A 1 HETATM 8 C C8 NAG . . . E 3 16.475 -14.702 -20.504 1 67.67 ? C8 NAG 166 A 1 HETATM 9 N N2 NAG . . . E 3 15.849 -12.806 -19.108 1 66.16 ? N2 NAG 166 A 1 HETATM 10 O O3 NAG . . . E 3 13.08 -12.233 -18.584 1 65.47 ? O3 NAG 166 A 1 HETATM 11 O O4 NAG . . . E 3 12.384 -12.109 -15.719 1 65.43 ? O4 NAG 166 A 1 HETATM 12 O O5 NAG . . . E 3 15.295 -14.322 -15.823 1 63.29 ? O5 NAG 166 A 1 HETATM 13 O O6 NAG . . . E 3 12.887 -13.945 -13.254 1 67.11 ? O6 NAG 166 A 1 HETATM 14 O O7 NAG . . . E 3 15.147 -12.891 -21.244 1 68.3 ? O7 NAG 166 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 1026 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 14 #