data_3OAP # _model_server_result.job_id 8ZlqrI07Zg_5Smp1B6BnAQ _model_server_result.datetime_utc '2024-11-16 17:58:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oap # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3OAP # _exptl.entry_id 3OAP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 300.435 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(9cis)-retinoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OAP _cell.length_a 65.831 _cell.length_b 65.831 _cell.length_c 111.856 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OAP _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_775 -y+2,-x+2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 131.662 131.662 55.928 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H28 O2' _chem_comp.formula_weight 300.435 _chem_comp.id 9CR _chem_comp.mon_nstd_flag . _chem_comp.name '(9cis)-retinoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C15 9CR doub 1 n n C15 C14 9CR sing 2 n n C15 O2 9CR sing 3 n n C14 C13 9CR doub 4 e n C13 C12 9CR sing 5 n n C13 C20 9CR sing 6 n n C12 C11 9CR doub 7 e n C11 C10 9CR sing 8 n n C18 C5 9CR sing 9 n n C10 C9 9CR doub 10 z n C9 C19 9CR sing 11 n n C9 C8 9CR sing 12 n n C8 C7 9CR doub 13 e n C5 C4 9CR sing 14 n n C5 C6 9CR doub 15 n n C4 C3 9CR sing 16 n n C7 C6 9CR sing 17 n n C6 C1 9CR sing 18 n n C3 C2 9CR sing 19 n n C1 C17 9CR sing 20 n n C1 C2 9CR sing 21 n n C1 C16 9CR sing 22 n n C2 H1 9CR sing 23 n n C2 H2 9CR sing 24 n n C3 H3 9CR sing 25 n n C3 H4 9CR sing 26 n n C4 H5 9CR sing 27 n n C4 H6 9CR sing 28 n n C7 H7 9CR sing 29 n n C8 H8 9CR sing 30 n n C10 H9 9CR sing 31 n n C11 H10 9CR sing 32 n n C12 H11 9CR sing 33 n n C14 H12 9CR sing 34 n n C16 H13 9CR sing 35 n n C16 H14 9CR sing 36 n n C16 H15 9CR sing 37 n n C17 H16 9CR sing 38 n n C17 H17 9CR sing 39 n n C17 H18 9CR sing 40 n n C18 H19 9CR sing 41 n n C18 H20 9CR sing 42 n n C18 H21 9CR sing 43 n n C19 H22 9CR sing 44 n n C19 H23 9CR sing 45 n n C19 H24 9CR sing 46 n n C20 H25 9CR sing 47 n n C20 H26 9CR sing 48 n n C20 H27 9CR sing 49 n n O2 H28 9CR sing 50 n n # _atom_sites.entry_id 3OAP _atom_sites.fract_transf_matrix[1][1] 0.01519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00894 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 9CR A 1 500 500 9CR REA . D 4 HOH A 1 1 1 HOH TIP . D 4 HOH A 2 2 2 HOH TIP . D 4 HOH A 3 3 3 HOH TIP . D 4 HOH A 4 4 4 HOH TIP . D 4 HOH A 5 5 5 HOH TIP . D 4 HOH A 6 6 6 HOH TIP . D 4 HOH A 7 7 7 HOH TIP . D 4 HOH A 8 8 8 HOH TIP . D 4 HOH A 9 9 9 HOH TIP . D 4 HOH A 10 10 10 HOH TIP . D 4 HOH A 11 11 11 HOH TIP . D 4 HOH A 12 12 12 HOH TIP . D 4 HOH A 13 13 13 HOH TIP . D 4 HOH A 14 14 14 HOH TIP . D 4 HOH A 15 15 15 HOH TIP . D 4 HOH A 16 16 16 HOH TIP . D 4 HOH A 17 17 17 HOH TIP . D 4 HOH A 18 18 18 HOH TIP . D 4 HOH A 19 19 19 HOH TIP . D 4 HOH A 20 20 20 HOH TIP . D 4 HOH A 21 21 21 HOH TIP . D 4 HOH A 22 22 22 HOH TIP . D 4 HOH A 23 23 23 HOH TIP . D 4 HOH A 24 24 24 HOH TIP . D 4 HOH A 25 26 26 HOH TIP . D 4 HOH A 26 27 27 HOH TIP . D 4 HOH A 27 28 28 HOH TIP . D 4 HOH A 28 29 29 HOH TIP . D 4 HOH A 29 31 31 HOH TIP . D 4 HOH A 30 32 32 HOH TIP . D 4 HOH A 31 33 33 HOH TIP . D 4 HOH A 32 34 34 HOH TIP . D 4 HOH A 33 35 35 HOH TIP . D 4 HOH A 34 36 36 HOH TIP . D 4 HOH A 35 37 37 HOH TIP . D 4 HOH A 36 38 38 HOH TIP . D 4 HOH A 37 39 39 HOH TIP . D 4 HOH A 38 40 40 HOH TIP . D 4 HOH A 39 41 41 HOH TIP . D 4 HOH A 40 42 42 HOH TIP . D 4 HOH A 41 43 43 HOH TIP . D 4 HOH A 42 44 44 HOH TIP . D 4 HOH A 43 45 45 HOH TIP . D 4 HOH A 44 46 46 HOH TIP . D 4 HOH A 45 47 47 HOH TIP . D 4 HOH A 46 48 48 HOH TIP . D 4 HOH A 47 49 49 HOH TIP . D 4 HOH A 48 51 51 HOH TIP . D 4 HOH A 49 52 52 HOH TIP . D 4 HOH A 50 53 53 HOH TIP . D 4 HOH A 51 54 54 HOH TIP . D 4 HOH A 52 55 55 HOH TIP . D 4 HOH A 53 56 56 HOH TIP . D 4 HOH A 54 57 57 HOH TIP . D 4 HOH A 55 58 58 HOH TIP . D 4 HOH A 56 59 59 HOH TIP . D 4 HOH A 57 60 60 HOH TIP . D 4 HOH A 58 61 61 HOH TIP . D 4 HOH A 59 62 62 HOH TIP . D 4 HOH A 60 63 63 HOH TIP . D 4 HOH A 61 64 64 HOH TIP . D 4 HOH A 62 65 65 HOH TIP . D 4 HOH A 63 66 66 HOH TIP . D 4 HOH A 64 67 67 HOH TIP . D 4 HOH A 65 68 68 HOH TIP . D 4 HOH A 66 69 69 HOH TIP . D 4 HOH A 67 70 70 HOH TIP . D 4 HOH A 68 71 71 HOH TIP . D 4 HOH A 69 72 72 HOH TIP . D 4 HOH A 70 73 73 HOH TIP . D 4 HOH A 71 74 74 HOH TIP . D 4 HOH A 72 75 75 HOH TIP . D 4 HOH A 73 76 76 HOH TIP . D 4 HOH A 74 77 77 HOH TIP . D 4 HOH A 75 78 78 HOH TIP . D 4 HOH A 76 79 79 HOH TIP . D 4 HOH A 77 80 80 HOH TIP . D 4 HOH A 78 81 81 HOH TIP . D 4 HOH A 79 82 82 HOH TIP . D 4 HOH A 80 83 83 HOH TIP . D 4 HOH A 81 84 84 HOH TIP . D 4 HOH A 82 85 85 HOH TIP . D 4 HOH A 83 86 86 HOH TIP . D 4 HOH A 84 87 87 HOH TIP . D 4 HOH A 85 88 88 HOH TIP . D 4 HOH A 86 89 89 HOH TIP . D 4 HOH A 87 90 90 HOH TIP . D 4 HOH A 88 91 91 HOH TIP . D 4 HOH A 89 92 92 HOH TIP . D 4 HOH A 90 93 93 HOH TIP . D 4 HOH A 91 94 94 HOH TIP . D 4 HOH A 92 95 95 HOH TIP . D 4 HOH A 93 96 96 HOH TIP . D 4 HOH A 94 97 97 HOH TIP . D 4 HOH A 95 98 98 HOH TIP . D 4 HOH A 96 99 99 HOH TIP . D 4 HOH A 97 100 100 HOH TIP . D 4 HOH A 98 102 102 HOH TIP . D 4 HOH A 99 103 103 HOH TIP . D 4 HOH A 100 104 104 HOH TIP . D 4 HOH A 101 105 105 HOH TIP . D 4 HOH A 102 106 106 HOH TIP . D 4 HOH A 103 107 107 HOH TIP . D 4 HOH A 104 108 108 HOH TIP . D 4 HOH A 105 109 109 HOH TIP . D 4 HOH A 106 110 110 HOH TIP . D 4 HOH A 107 111 111 HOH TIP . D 4 HOH A 108 112 112 HOH TIP . D 4 HOH A 109 113 113 HOH TIP . D 4 HOH A 110 114 114 HOH TIP . D 4 HOH A 111 115 115 HOH TIP . D 4 HOH A 112 116 116 HOH TIP . D 4 HOH A 113 117 117 HOH TIP . D 4 HOH A 114 118 118 HOH TIP . D 4 HOH A 115 119 119 HOH TIP . D 4 HOH A 116 120 120 HOH TIP . D 4 HOH A 117 121 121 HOH TIP . D 4 HOH A 118 122 122 HOH TIP . D 4 HOH A 119 123 123 HOH TIP . D 4 HOH A 120 124 124 HOH TIP . D 4 HOH A 121 125 125 HOH TIP . D 4 HOH A 122 126 126 HOH TIP . D 4 HOH A 123 127 127 HOH TIP . D 4 HOH A 124 128 128 HOH TIP . D 4 HOH A 125 129 129 HOH TIP . D 4 HOH A 126 130 130 HOH TIP . D 4 HOH A 127 131 131 HOH TIP . D 4 HOH A 128 132 132 HOH TIP . D 4 HOH A 129 133 133 HOH TIP . D 4 HOH A 130 134 134 HOH TIP . D 4 HOH A 131 135 135 HOH TIP . D 4 HOH A 132 136 136 HOH TIP . D 4 HOH A 133 137 137 HOH TIP . D 4 HOH A 134 138 138 HOH TIP . D 4 HOH A 135 139 139 HOH TIP . D 4 HOH A 136 140 140 HOH TIP . D 4 HOH A 137 141 141 HOH TIP . D 4 HOH A 138 142 142 HOH TIP . D 4 HOH A 139 143 143 HOH TIP . D 4 HOH A 140 144 144 HOH TIP . E 4 HOH B 1 25 25 HOH TIP . E 4 HOH B 2 30 30 HOH TIP . E 4 HOH B 3 50 50 HOH TIP . E 4 HOH B 4 101 101 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 9CR . . . C 3 67.134 46.88 32.271 1 46.1 ? C1 9CR 500 A 1 HETATM 2 C C2 9CR . . . C 3 67.371 45.871 33.397 1 44.85 ? C2 9CR 500 A 1 HETATM 3 C C3 9CR . . . C 3 66.568 46.247 34.645 1 45.24 ? C3 9CR 500 A 1 HETATM 4 C C4 9CR . . . C 3 65.069 46.184 34.348 1 47.35 ? C4 9CR 500 A 1 HETATM 5 C C5 9CR . . . C 3 64.773 46.943 33.054 1 46.54 ? C5 9CR 500 A 1 HETATM 6 C C6 9CR . . . C 3 65.634 46.917 31.961 1 44.72 ? C6 9CR 500 A 1 HETATM 7 C C7 9CR . . . C 3 65.197 47.134 30.658 1 42.61 ? C7 9CR 500 A 1 HETATM 8 C C8 9CR . . . C 3 63.852 47.129 30.302 1 39.98 ? C8 9CR 500 A 1 HETATM 9 C C9 9CR . . . C 3 63.482 47.376 28.984 1 39.26 ? C9 9CR 500 A 1 HETATM 10 C C10 9CR . . . C 3 62.151 47.337 28.581 1 37.61 ? C10 9CR 500 A 1 HETATM 11 C C11 9CR . . . C 3 61.105 47.022 29.441 1 34.06 ? C11 9CR 500 A 1 HETATM 12 C C12 9CR . . . C 3 59.811 47.019 28.93 1 32.28 ? C12 9CR 500 A 1 HETATM 13 C C13 9CR . . . C 3 58.693 46.703 29.695 1 31.38 ? C13 9CR 500 A 1 HETATM 14 C C14 9CR . . . C 3 57.442 46.75 29.089 1 32.79 ? C14 9CR 500 A 1 HETATM 15 C C15 9CR . . . C 3 56.264 46.454 29.767 1 32.88 ? C15 9CR 500 A 1 HETATM 16 C C16 9CR . . . C 3 67.901 46.449 31.019 1 44.27 ? C16 9CR 500 A 1 HETATM 17 C C17 9CR . . . C 3 67.596 48.267 32.721 1 46.71 ? C17 9CR 500 A 1 HETATM 18 C C18 9CR . . . C 3 63.541 47.852 33.027 1 48.52 ? C18 9CR 500 A 1 HETATM 19 C C19 9CR . . . C 3 64.557 47.719 27.951 1 40.89 ? C19 9CR 500 A 1 HETATM 20 C C20 9CR . . . C 3 58.847 46.259 31.151 1 33.59 ? C20 9CR 500 A 1 HETATM 21 O O1 9CR . . . C 3 55.236 47.085 29.436 1 30.45 ? O1 9CR 500 A 1 HETATM 22 O O2 9CR . . . C 3 56.28 45.554 30.634 1 33.4 ? O2 9CR 500 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 484 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #