data_3OBB # _model_server_result.job_id aK8bNEpsOGA66jA9eyGYRA _model_server_result.datetime_utc '2024-11-19 09:19:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3obb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":405}' # _entry.id 3OBB # _exptl.entry_id 3OBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OBB _cell.length_a 92.611 _cell.length_b 92.611 _cell.length_c 124.86 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 1,2,3,4 A,B,C,D,E,F,G 2 1,4 A,B,C,D,E,F,G 3 1,5 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 46.3055 80.203479 0 3 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 83.24 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 46.3055 80.203479 83.24 5 'crystal symmetry operation' 11_556 -x+y,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 124.86 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 3 A MSE 1 1_555 A N LYS 4 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C HIS 13 A HIS 11 1_555 A N MSE 14 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C MSE 14 A MSE 12 1_555 A N GLY 15 A GLY 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale4 A C PRO 17 A PRO 15 1_555 A N MSE 18 A MSE 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 18 A MSE 16 1_555 A N ALA 19 A ALA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale6 A C SER 65 A SER 63 1_555 A N MSE 66 A MSE 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 A C MSE 66 A MSE 64 1_555 A N LEU 67 A LEU 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale8 A C ALA 117 A ALA 115 1_555 A N MSE 118 A MSE 116 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C MSE 118 A MSE 116 1_555 A N LEU 119 A LEU 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C PHE 137 A PHE 135 1_555 A N MSE 138 A MSE 136 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 A C MSE 138 A MSE 136 1_555 A N VAL 139 A VAL 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale12 A C ALA 155 A ALA 153 1_555 A N MSE 156 A MSE 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale13 A C MSE 156 A MSE 154 1_555 A N GLY 157 A GLY 155 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 A C LEU 183 A LEU 181 1_555 A N MSE 184 A MSE 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale15 A C MSE 184 A MSE 182 1_555 A N ILE 185 A ILE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale16 A C ALA 190 A ALA 188 1_555 A N MSE 191 A MSE 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale17 A C MSE 191 A MSE 189 1_555 A N ALA 192 A ALA 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale18 A C ILE 207 A ILE 205 1_555 A N MSE 208 A MSE 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 A C MSE 208 A MSE 206 1_555 A N ARG 209 A ARG 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale20 A C VAL 227 A VAL 225 1_555 A N MSE 228 A MSE 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale21 A C MSE 228 A MSE 226 1_555 A N GLU 229 A GLU 227 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale22 A C PHE 241 A PHE 239 1_555 A N MSE 242 A MSE 240 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 A C MSE 242 A MSE 240 1_555 A N ALA 243 A ALA 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale24 A C LEU 245 A LEU 243 1_555 A N MSE 246 A MSE 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale25 A C MSE 246 A MSE 244 1_555 A N ALA 247 A ALA 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale26 A C PRO 265 A PRO 263 1_555 A N MSE 266 A MSE 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale27 A C MSE 266 A MSE 264 1_555 A N GLY 267 A GLY 265 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 89 n n C1 C2 EDO sing 90 n n C1 H11 EDO sing 91 n n C1 H12 EDO sing 92 n n O1 HO1 EDO sing 93 n n C2 O2 EDO sing 94 n n C2 H21 EDO sing 95 n n C2 H22 EDO sing 96 n n O2 HO2 EDO sing 97 n n # _atom_sites.entry_id 3OBB _atom_sites.fract_transf_matrix[1][1] 0.010798 _atom_sites.fract_transf_matrix[1][2] 0.006234 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008009 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACT A 1 402 402 ACT ACT . C 2 ACT A 1 403 403 ACT ACT . D 2 ACT A 1 404 404 ACT ACT . E 3 EDO A 1 405 405 EDO EDO . F 4 EPE A 1 299 1 EPE EPE . G 5 HOH A 1 501 501 HOH HOH . G 5 HOH A 2 502 502 HOH HOH . G 5 HOH A 3 503 503 HOH HOH . G 5 HOH A 4 504 504 HOH HOH . G 5 HOH A 5 505 505 HOH HOH . G 5 HOH A 6 506 506 HOH HOH . G 5 HOH A 7 507 507 HOH HOH . G 5 HOH A 8 508 508 HOH HOH . G 5 HOH A 9 509 509 HOH HOH . G 5 HOH A 10 510 510 HOH HOH . G 5 HOH A 11 511 511 HOH HOH . G 5 HOH A 12 512 512 HOH HOH . G 5 HOH A 13 513 513 HOH HOH . G 5 HOH A 14 514 514 HOH HOH . G 5 HOH A 15 515 515 HOH HOH . G 5 HOH A 16 516 516 HOH HOH . G 5 HOH A 17 517 517 HOH HOH . G 5 HOH A 18 518 518 HOH HOH . G 5 HOH A 19 519 519 HOH HOH . G 5 HOH A 20 520 520 HOH HOH . G 5 HOH A 21 521 521 HOH HOH . G 5 HOH A 22 522 522 HOH HOH . G 5 HOH A 23 523 523 HOH HOH . G 5 HOH A 24 524 524 HOH HOH . G 5 HOH A 25 525 525 HOH HOH . G 5 HOH A 26 526 526 HOH HOH . G 5 HOH A 27 527 527 HOH HOH . G 5 HOH A 28 528 528 HOH HOH . G 5 HOH A 29 529 529 HOH HOH . G 5 HOH A 30 530 530 HOH HOH . G 5 HOH A 31 531 531 HOH HOH . G 5 HOH A 32 532 532 HOH HOH . G 5 HOH A 33 533 533 HOH HOH . G 5 HOH A 34 534 534 HOH HOH . G 5 HOH A 35 535 535 HOH HOH . G 5 HOH A 36 536 536 HOH HOH . G 5 HOH A 37 537 537 HOH HOH . G 5 HOH A 38 539 539 HOH HOH . G 5 HOH A 39 540 540 HOH HOH . G 5 HOH A 40 541 541 HOH HOH . G 5 HOH A 41 542 542 HOH HOH . G 5 HOH A 42 543 543 HOH HOH . G 5 HOH A 43 544 544 HOH HOH . G 5 HOH A 44 545 545 HOH HOH . G 5 HOH A 45 546 546 HOH HOH . G 5 HOH A 46 547 547 HOH HOH . G 5 HOH A 47 548 548 HOH HOH . G 5 HOH A 48 549 549 HOH HOH . G 5 HOH A 49 550 550 HOH HOH . G 5 HOH A 50 551 551 HOH HOH . G 5 HOH A 51 552 552 HOH HOH . G 5 HOH A 52 553 553 HOH HOH . G 5 HOH A 53 554 554 HOH HOH . G 5 HOH A 54 555 555 HOH HOH . G 5 HOH A 55 556 556 HOH HOH . G 5 HOH A 56 557 557 HOH HOH . G 5 HOH A 57 558 558 HOH HOH . G 5 HOH A 58 559 559 HOH HOH . G 5 HOH A 59 560 560 HOH HOH . G 5 HOH A 60 561 561 HOH HOH . G 5 HOH A 61 562 562 HOH HOH . G 5 HOH A 62 563 563 HOH HOH . G 5 HOH A 63 564 564 HOH HOH . G 5 HOH A 64 565 565 HOH HOH . G 5 HOH A 65 566 566 HOH HOH . G 5 HOH A 66 567 567 HOH HOH . G 5 HOH A 67 568 568 HOH HOH . G 5 HOH A 68 569 569 HOH HOH . G 5 HOH A 69 570 570 HOH HOH . G 5 HOH A 70 571 571 HOH HOH . G 5 HOH A 71 572 572 HOH HOH . G 5 HOH A 72 573 573 HOH HOH . G 5 HOH A 73 574 574 HOH HOH . G 5 HOH A 74 575 575 HOH HOH . G 5 HOH A 75 576 576 HOH HOH . G 5 HOH A 76 577 577 HOH HOH . G 5 HOH A 77 578 578 HOH HOH . G 5 HOH A 78 579 579 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . E 3 -0.865 28.163 60.088 1 56.69 ? C1 EDO 405 A 1 HETATM 2 O O1 EDO . . . E 3 -1.552 29.248 60.734 1 56.94 ? O1 EDO 405 A 1 HETATM 3 C C2 EDO . . . E 3 -0.253 28.602 58.749 1 55.25 ? C2 EDO 405 A 1 HETATM 4 O O2 EDO . . . E 3 -1.235 29.085 57.809 1 51.74 ? O2 EDO 405 A 1 # _model_server_stats.io_time_ms 45 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 4 #