data_3OBG # _model_server_result.job_id -ar4pFOPfDIanurXmNDFLw _model_server_result.datetime_utc '2024-11-25 13:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3obg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":361}' # _entry.id 3OBG # _exptl.entry_id 3OBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 377.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OBG _cell.length_a 65.118 _cell.length_b 73.697 _cell.length_c 77.08 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H16 F N3 O S' _chem_comp.formula_weight 377.435 _chem_comp.id SB2 _chem_comp.mon_nstd_flag . _chem_comp.name 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 S1 SB2 doub 277 n n C1 S1 SB2 sing 278 n n C1 H11 SB2 sing 279 n n C1 H12 SB2 sing 280 n n C1 H13 SB2 sing 281 n n S1 CA3 SB2 sing 282 n n CA1 CA2 SB2 doub 283 n y CA1 CA6 SB2 sing 284 n y CA1 HA1 SB2 sing 285 n n CA2 CA3 SB2 sing 286 n y CA2 HA2 SB2 sing 287 n n CA3 CA4 SB2 doub 288 n y CA4 CA5 SB2 sing 289 n y CA4 HA4 SB2 sing 290 n n CA5 CA6 SB2 doub 291 n y CA5 HA5 SB2 sing 292 n n CA6 CC2 SB2 sing 293 n y NB1 CB2 SB2 doub 294 n y NB1 CB6 SB2 sing 295 n y CB2 CB3 SB2 sing 296 n y CB2 HB2 SB2 sing 297 n n CB3 CB4 SB2 doub 298 n y CB3 HB3 SB2 sing 299 n n CB4 CB5 SB2 sing 300 n y CB4 CC5 SB2 sing 301 n y CB5 CB6 SB2 doub 302 n y CB5 HB5 SB2 sing 303 n n CB6 HB6 SB2 sing 304 n n NC1 CC2 SB2 sing 305 n y NC1 CC5 SB2 sing 306 n y NC1 HN1 SB2 sing 307 n n CC2 NC3 SB2 doub 308 n y NC3 CC4 SB2 sing 309 n y CC4 CC5 SB2 doub 310 n y CC4 CD6 SB2 sing 311 n y CD1 CD2 SB2 doub 312 n y CD1 CD6 SB2 sing 313 n y CD1 HD1 SB2 sing 314 n n CD2 CD3 SB2 sing 315 n y CD2 HD2 SB2 sing 316 n n CD3 CD4 SB2 doub 317 n y CD3 FD3 SB2 sing 318 n n CD4 CD5 SB2 sing 319 n y CD4 HD4 SB2 sing 320 n n CD5 CD6 SB2 doub 321 n y CD5 HD5 SB2 sing 322 n n # _atom_sites.entry_id 3OBG _atom_sites.fract_transf_matrix[1][1] 0.015357 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013569 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012974 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SB2 A 1 361 1 SB2 SB2 . C 3 HOH A 1 362 1 HOH HOH . C 3 HOH A 2 363 2 HOH HOH . C 3 HOH A 3 364 3 HOH HOH . C 3 HOH A 4 365 4 HOH HOH . C 3 HOH A 5 366 5 HOH HOH . C 3 HOH A 6 367 6 HOH HOH . C 3 HOH A 7 368 7 HOH HOH . C 3 HOH A 8 369 8 HOH HOH . C 3 HOH A 9 370 9 HOH HOH . C 3 HOH A 10 371 10 HOH HOH . C 3 HOH A 11 372 11 HOH HOH . C 3 HOH A 12 373 12 HOH HOH . C 3 HOH A 13 374 13 HOH HOH . C 3 HOH A 14 375 14 HOH HOH . C 3 HOH A 15 376 15 HOH HOH . C 3 HOH A 16 377 16 HOH HOH . C 3 HOH A 17 378 17 HOH HOH . C 3 HOH A 18 379 18 HOH HOH . C 3 HOH A 19 380 19 HOH HOH . C 3 HOH A 20 381 20 HOH HOH . C 3 HOH A 21 382 21 HOH HOH . C 3 HOH A 22 383 22 HOH HOH . C 3 HOH A 23 384 23 HOH HOH . C 3 HOH A 24 385 24 HOH HOH . C 3 HOH A 25 386 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O2 SB2 . . . B 2 -3.061 5.705 -23.656 1 48.01 ? O2 SB2 361 A 1 HETATM 2 C C1 SB2 . . . B 2 -3.363 6.453 -21.018 1 50.94 ? C1 SB2 361 A 1 HETATM 3 S S1 SB2 . . . B 2 -2.115 6.398 -22.328 1 47.26 ? S1 SB2 361 A 1 HETATM 4 C CA1 SB2 . . . B 2 0.314 4.138 -19.984 1 46.85 ? CA1 SB2 361 A 1 HETATM 5 C CA2 SB2 . . . B 2 -0.554 5.135 -20.443 1 46.78 ? CA2 SB2 361 A 1 HETATM 6 C CA3 SB2 . . . B 2 -0.992 5.131 -21.776 1 47.37 ? CA3 SB2 361 A 1 HETATM 7 C CA4 SB2 . . . B 2 -0.609 4.15 -22.69 1 46.4 ? CA4 SB2 361 A 1 HETATM 8 C CA5 SB2 . . . B 2 0.259 3.171 -22.224 1 46.94 ? CA5 SB2 361 A 1 HETATM 9 C CA6 SB2 . . . B 2 0.747 3.186 -20.907 1 44.88 ? CA6 SB2 361 A 1 HETATM 10 N NB1 SB2 . . . B 2 3.123 -3.951 -21.705 1 37.75 ? NB1 SB2 361 A 1 HETATM 11 C CB2 SB2 . . . B 2 3.009 -3.659 -20.402 1 39.12 ? CB2 SB2 361 A 1 HETATM 12 C CB3 SB2 . . . B 2 2.836 -2.333 -19.994 1 40.28 ? CB3 SB2 361 A 1 HETATM 13 C CB4 SB2 . . . B 2 2.801 -1.32 -20.954 1 39.97 ? CB4 SB2 361 A 1 HETATM 14 C CB5 SB2 . . . B 2 2.918 -1.659 -22.294 1 37.2 ? CB5 SB2 361 A 1 HETATM 15 C CB6 SB2 . . . B 2 3.087 -2.995 -22.647 1 38.24 ? CB6 SB2 361 A 1 HETATM 16 N NC1 SB2 . . . B 2 1.654 0.874 -21.152 1 44.69 ? NC1 SB2 361 A 1 HETATM 17 C CC2 SB2 . . . B 2 1.632 2.067 -20.525 1 45.14 ? CC2 SB2 361 A 1 HETATM 18 N NC3 SB2 . . . B 2 2.464 2.15 -19.457 1 43.32 ? NC3 SB2 361 A 1 HETATM 19 C CC4 SB2 . . . B 2 3.077 0.943 -19.469 1 42.49 ? CC4 SB2 361 A 1 HETATM 20 C CC5 SB2 . . . B 2 2.545 0.084 -20.545 1 40.98 ? CC5 SB2 361 A 1 HETATM 21 C CD1 SB2 . . . B 2 3.511 0.639 -17.139 1 41.14 ? CD1 SB2 361 A 1 HETATM 22 C CD2 SB2 . . . B 2 4.256 0.209 -16.066 1 42.79 ? CD2 SB2 361 A 1 HETATM 23 C CD3 SB2 . . . B 2 5.485 -0.389 -16.311 1 44.24 ? CD3 SB2 361 A 1 HETATM 24 C CD4 SB2 . . . B 2 5.986 -0.54 -17.625 1 44.42 ? CD4 SB2 361 A 1 HETATM 25 C CD5 SB2 . . . B 2 5.228 -0.097 -18.702 1 43.75 ? CD5 SB2 361 A 1 HETATM 26 C CD6 SB2 . . . B 2 4.009 0.526 -18.423 1 42.77 ? CD6 SB2 361 A 1 HETATM 27 F FD3 SB2 . . . B 2 6.191 -0.816 -15.239 1 44.5 ? FD3 SB2 361 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #