data_3OBH # _model_server_result.job_id B5VdnoaHXKXbxSx6cZButg _model_server_result.datetime_utc '2024-11-15 14:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3obh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 3OBH # _exptl.entry_id 3OBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OBH _cell.length_a 66.388 _cell.length_b 66.388 _cell.length_c 41.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 52 A LYS 57 1_555 A N MSE 53 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale2 A C MSE 53 A MSE 58 1_555 A N GLY 54 A GLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C THR 66 A THR 71 1_555 A N MSE 67 A MSE 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 67 A MSE 72 1_555 A N VAL 68 A VAL 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 B C LYS 52 B LYS 57 1_555 B N MSE 53 B MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 B C MSE 53 B MSE 58 1_555 B N GLY 54 B GLY 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale7 B C THR 66 B THR 71 1_555 B N MSE 67 B MSE 72 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.332 ? covale ? covale8 B C THR 66 B THR 71 1_555 B N MSE 67 B MSE 72 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.327 ? covale ? covale9 B C MSE 67 B MSE 72 1_555 B N VAL 68 B VAL 73 1_555 ? A ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 B C MSE 67 B MSE 72 1_555 B N VAL 68 B VAL 73 1_555 ? B ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OBH _atom_sites.fract_transf_matrix[1][1] 0.015063 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015063 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023837 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY A 1 103 103 ACY ACY . D 3 CIT A 1 201 201 CIT CIT . E 2 ACY B 1 102 102 ACY ACY . F 4 PEG B 1 1 1 PEG PEG . G 4 PEG B 1 2 2 PEG PEG . H 5 HOH A 1 1 1 HOH HOH . H 5 HOH A 2 2 2 HOH HOH . H 5 HOH A 3 3 3 HOH HOH . H 5 HOH A 4 4 4 HOH HOH . H 5 HOH A 5 5 5 HOH HOH . H 5 HOH A 6 88 6 HOH HOH . H 5 HOH A 7 89 7 HOH HOH . H 5 HOH A 8 90 8 HOH HOH . H 5 HOH A 9 91 9 HOH HOH . H 5 HOH A 10 92 10 HOH HOH . H 5 HOH A 11 93 11 HOH HOH . H 5 HOH A 12 94 12 HOH HOH . H 5 HOH A 13 95 13 HOH HOH . H 5 HOH A 14 96 14 HOH HOH . H 5 HOH A 15 97 15 HOH HOH . H 5 HOH A 16 98 16 HOH HOH . H 5 HOH A 17 99 17 HOH HOH . H 5 HOH A 18 100 18 HOH HOH . H 5 HOH A 19 101 19 HOH HOH . H 5 HOH A 20 102 41 HOH HOH . H 5 HOH A 21 104 43 HOH HOH . H 5 HOH A 22 105 45 HOH HOH . I 5 HOH B 1 88 20 HOH HOH . I 5 HOH B 2 89 21 HOH HOH . I 5 HOH B 3 90 22 HOH HOH . I 5 HOH B 4 91 23 HOH HOH . I 5 HOH B 5 92 24 HOH HOH . I 5 HOH B 6 93 25 HOH HOH . I 5 HOH B 7 94 26 HOH HOH . I 5 HOH B 8 95 27 HOH HOH . I 5 HOH B 9 96 28 HOH HOH . I 5 HOH B 10 97 29 HOH HOH . I 5 HOH B 11 98 30 HOH HOH . I 5 HOH B 12 99 31 HOH HOH . I 5 HOH B 13 100 32 HOH HOH . I 5 HOH B 14 101 33 HOH HOH . I 5 HOH B 15 103 34 HOH HOH . I 5 HOH B 16 104 35 HOH HOH . I 5 HOH B 17 105 36 HOH HOH . I 5 HOH B 18 106 37 HOH HOH . I 5 HOH B 19 107 38 HOH HOH . I 5 HOH B 20 108 39 HOH HOH . I 5 HOH B 21 109 40 HOH HOH . I 5 HOH B 22 110 42 HOH HOH . I 5 HOH B 23 111 44 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 15.853 8.346 32.557 1 38.64 ? C1 CIT 201 A 1 HETATM 2 O O1 CIT . . . D 3 15.624 9.198 33.633 1 40.21 ? O1 CIT 201 A 1 HETATM 3 O O2 CIT . . . D 3 16.174 9.006 31.401 1 29.82 ? O2 CIT 201 A 1 HETATM 4 C C2 CIT . . . D 3 16.833 7.241 32.906 1 42.78 ? C2 CIT 201 A 1 HETATM 5 C C3 CIT . . . D 3 16.671 5.823 32.311 1 45.84 ? C3 CIT 201 A 1 HETATM 6 O O7 CIT . . . D 3 17.766 5.08 32.712 1 49.19 ? O7 CIT 201 A 1 HETATM 7 C C4 CIT . . . D 3 15.399 5.135 32.83 1 39.94 ? C4 CIT 201 A 1 HETATM 8 C C5 CIT . . . D 3 15.463 3.653 33.186 1 37.33 ? C5 CIT 201 A 1 HETATM 9 O O3 CIT . . . D 3 15.117 2.77 32.167 1 30.73 ? O3 CIT 201 A 1 HETATM 10 O O4 CIT . . . D 3 14.902 3.328 34.378 1 39.02 ? O4 CIT 201 A 1 HETATM 11 C C6 CIT . . . D 3 16.663 5.901 30.783 1 47.06 ? C6 CIT 201 A 1 HETATM 12 O O5 CIT . . . D 3 15.401 5.753 30.216 1 41.38 ? O5 CIT 201 A 1 HETATM 13 O O6 CIT . . . D 3 17.362 6.983 30.273 1 55.45 ? O6 CIT 201 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 13 #