data_3OC0 # _model_server_result.job_id xCPK-7oEqz7tKcDhm9y3bQ _model_server_result.datetime_utc '2024-11-15 12:02:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oc0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":794}' # _entry.id 3OC0 # _exptl.entry_id 3OC0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OC0 _cell.length_a 65.561 _cell.length_b 68.487 _cell.length_c 421.411 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OC0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 290 A CYS 328 1_555 A SG CYS 301 A CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 347 A CYS 385 1_555 A SG CYS 356 A CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 A SG CYS 406 A CYS 444 1_555 A SG CYS 409 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf4 A SG CYS 416 A CYS 454 1_555 A SG CYS 434 A CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? disulf ? disulf5 A SG CYS 611 A CYS 649 1_555 A SG CYS 724 A CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? disulf ? disulf6 B SG CYS 290 B CYS 328 1_555 B SG CYS 301 B CYS 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf7 B SG CYS 347 B CYS 385 1_555 B SG CYS 356 B CYS 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf8 B SG CYS 406 B CYS 444 1_555 B SG CYS 409 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? disulf ? disulf9 B SG CYS 416 B CYS 454 1_555 B SG CYS 434 B CYS 472 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 B SG CYS 611 B CYS 649 1_555 B SG CYS 724 B CYS 762 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? covale ? covale1 A ND2 ASN 47 A ASN 85 1_555 D C1 NAG . A NAG 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.426 ? covale ? covale2 A ND2 ASN 112 A ASN 150 1_555 C C1 NAG . A NAG 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 A ND2 ASN 191 A ASN 229 1_555 F C1 NAG . A NAG 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale4 A ND2 ASN 243 A ASN 281 1_555 E C1 NAG . A NAG 795 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 B ND2 ASN 47 B ASN 85 1_555 I C1 NAG . B NAG 794 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale6 B ND2 ASN 54 B ASN 92 1_555 K C1 NAG . B NAG 797 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale7 B ND2 ASN 112 B ASN 150 1_555 H C1 NAG . B NAG 793 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale8 B ND2 ASN 191 B ASN 229 1_555 J C1 NAG . B NAG 796 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms ? # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3OC0 _atom_sites.fract_transf_matrix[1][1] 0.015253 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAG A 1 793 793 NAG NAG . D 2 NAG A 1 794 794 NAG NAG . E 2 NAG A 1 795 795 NAG NAG . F 2 NAG A 1 796 796 NAG NAG . G 3 B2Q A 1 900 900 B2Q B2Q . H 2 NAG B 1 793 793 NAG NAG . I 2 NAG B 1 794 794 NAG NAG . J 2 NAG B 1 796 796 NAG NAG . K 2 NAG B 1 797 797 NAG NAG . L 3 B2Q B 1 900 900 B2Q B2Q . M 4 HOH A 1 12 12 HOH HOH . M 4 HOH A 2 13 13 HOH HOH . M 4 HOH A 3 14 14 HOH HOH . M 4 HOH A 4 15 15 HOH HOH . M 4 HOH A 5 16 16 HOH HOH . M 4 HOH A 6 17 17 HOH HOH . M 4 HOH A 7 18 18 HOH HOH . M 4 HOH A 8 19 19 HOH HOH . M 4 HOH A 9 20 20 HOH HOH . M 4 HOH A 10 21 21 HOH HOH . M 4 HOH A 11 22 22 HOH HOH . M 4 HOH A 12 34 34 HOH HOH . M 4 HOH A 13 36 36 HOH HOH . M 4 HOH A 14 37 37 HOH HOH . M 4 HOH A 15 38 38 HOH HOH . M 4 HOH A 16 767 767 HOH HOH . M 4 HOH A 17 768 768 HOH HOH . M 4 HOH A 18 769 769 HOH HOH . M 4 HOH A 19 770 770 HOH HOH . M 4 HOH A 20 771 771 HOH HOH . M 4 HOH A 21 772 772 HOH HOH . M 4 HOH A 22 773 773 HOH HOH . M 4 HOH A 23 774 774 HOH HOH . M 4 HOH A 24 775 775 HOH HOH . M 4 HOH A 25 776 776 HOH HOH . M 4 HOH A 26 777 777 HOH HOH . M 4 HOH A 27 778 778 HOH HOH . M 4 HOH A 28 779 779 HOH HOH . M 4 HOH A 29 780 780 HOH HOH . M 4 HOH A 30 781 781 HOH HOH . M 4 HOH A 31 782 782 HOH HOH . M 4 HOH A 32 783 783 HOH HOH . M 4 HOH A 33 784 784 HOH HOH . M 4 HOH A 34 785 785 HOH HOH . M 4 HOH A 35 786 786 HOH HOH . M 4 HOH A 36 787 787 HOH HOH . M 4 HOH A 37 788 788 HOH HOH . M 4 HOH A 38 789 789 HOH HOH . M 4 HOH A 39 790 790 HOH HOH . M 4 HOH A 40 791 791 HOH HOH . M 4 HOH A 41 792 792 HOH HOH . N 4 HOH B 1 1 1 HOH HOH . N 4 HOH B 2 2 2 HOH HOH . N 4 HOH B 3 3 3 HOH HOH . N 4 HOH B 4 4 4 HOH HOH . N 4 HOH B 5 5 5 HOH HOH . N 4 HOH B 6 6 6 HOH HOH . N 4 HOH B 7 7 7 HOH HOH . N 4 HOH B 8 8 8 HOH HOH . N 4 HOH B 9 9 9 HOH HOH . N 4 HOH B 10 10 10 HOH HOH . N 4 HOH B 11 11 11 HOH HOH . N 4 HOH B 12 23 23 HOH HOH . N 4 HOH B 13 24 24 HOH HOH . N 4 HOH B 14 25 25 HOH HOH . N 4 HOH B 15 26 26 HOH HOH . N 4 HOH B 16 27 27 HOH HOH . N 4 HOH B 17 28 28 HOH HOH . N 4 HOH B 18 29 29 HOH HOH . N 4 HOH B 19 30 30 HOH HOH . N 4 HOH B 20 31 31 HOH HOH . N 4 HOH B 21 32 32 HOH HOH . N 4 HOH B 22 33 33 HOH HOH . N 4 HOH B 23 35 35 HOH HOH . N 4 HOH B 24 767 767 HOH HOH . N 4 HOH B 25 768 768 HOH HOH . N 4 HOH B 26 769 769 HOH HOH . N 4 HOH B 27 770 770 HOH HOH . N 4 HOH B 28 771 771 HOH HOH . N 4 HOH B 29 772 772 HOH HOH . N 4 HOH B 30 773 773 HOH HOH . N 4 HOH B 31 774 774 HOH HOH . N 4 HOH B 32 775 775 HOH HOH . N 4 HOH B 33 776 776 HOH HOH . N 4 HOH B 34 777 777 HOH HOH . N 4 HOH B 35 778 778 HOH HOH . N 4 HOH B 36 779 779 HOH HOH . N 4 HOH B 37 780 780 HOH HOH . N 4 HOH B 38 781 781 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . I 2 55.908 62.671 111.485 1 54.54 ? C1 NAG 794 B 1 HETATM 2 C C2 NAG . . . I 2 54.511 62.983 111.002 1 54.65 ? C2 NAG 794 B 1 HETATM 3 C C3 NAG . . . I 2 54.007 64.163 111.783 1 54.9 ? C3 NAG 794 B 1 HETATM 4 C C4 NAG . . . I 2 53.948 63.835 113.256 1 56.33 ? C4 NAG 794 B 1 HETATM 5 C C5 NAG . . . I 2 55.332 63.351 113.713 1 57.35 ? C5 NAG 794 B 1 HETATM 6 C C6 NAG . . . I 2 55.214 62.804 115.13 1 55.8 ? C6 NAG 794 B 1 HETATM 7 C C7 NAG . . . I 2 54.094 62.647 108.612 1 54.8 ? C7 NAG 794 B 1 HETATM 8 C C8 NAG . . . I 2 54.045 63.334 107.27 1 56.65 ? C8 NAG 794 B 1 HETATM 9 N N2 NAG . . . I 2 54.57 63.377 109.621 1 53.38 ? N2 NAG 794 B 1 HETATM 10 O O3 NAG . . . I 2 52.747 64.502 111.297 1 55.24 ? O3 NAG 794 B 1 HETATM 11 O O4 NAG . . . I 2 53.57 64.996 113.985 1 56.4 ? O4 NAG 794 B 1 HETATM 12 O O5 NAG . . . I 2 55.877 62.345 112.854 1 56.77 ? O5 NAG 794 B 1 HETATM 13 O O6 NAG . . . I 2 54.205 61.813 115.086 1 56.26 ? O6 NAG 794 B 1 HETATM 14 O O7 NAG . . . I 2 53.72 61.482 108.691 1 53.31 ? O7 NAG 794 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #