data_3OCL # _model_server_result.job_id EKa5XKl9bfs64AfM0CizwA _model_server_result.datetime_utc '2024-10-19 12:40:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ocl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3OCL # _exptl.entry_id 3OCL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 380.416 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OCL _cell.length_a 69.475 _cell.length_b 83.435 _cell.length_c 89.845 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OCL _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id CB9 _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CB9 _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id OG _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 279 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 294 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.415 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C17 H20 N2 O6 S' _chem_comp.formula_weight 380.416 _chem_comp.id CB9 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R,4S)-2-[(1R)-1-{[(2S)-2-carboxy-2-phenylacetyl]amino}-2-oxoethyl]-5,5-dimethyl-1,3-thiazolidine-4-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Bound form of Carbenicillin' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O CB9 doub 70 n n C CA CB9 sing 71 n n N CA CB9 sing 72 n n N CAT CB9 sing 73 n n CA CB CB9 sing 74 n n CB NAP CB9 sing 75 n n CB SAQ CB9 sing 76 n n CAA CAZ CB9 sing 77 n n CAB CAZ CB9 sing 78 n n OAD CAR CB9 doub 79 n n OAE CAS CB9 doub 80 n n OAF CAT CB9 doub 81 n n OAG CAR CB9 sing 82 n n OAH CAS CB9 sing 83 n n CAJ CAK CB9 doub 84 n y CAJ CAL CB9 sing 85 n y CAK CAM CB9 sing 86 n y CAL CAN CB9 doub 87 n y CAM CAU CB9 doub 88 n y CAN CAU CB9 sing 89 n y NAP CAX CB9 sing 90 n n SAQ CAZ CB9 sing 91 n n CAR CAX CB9 sing 92 n n CAS CAY CB9 sing 93 n n CAT CAY CB9 sing 94 n n CAU CAY CB9 sing 95 n n CAX CAZ CB9 sing 96 n n C H CB9 sing 97 n n N HN CB9 sing 98 n n CA HA CB9 sing 99 n n CB HB CB9 sing 100 n n CAA HAA CB9 sing 101 n n CAA HAAA CB9 sing 102 n n CAA HAAB CB9 sing 103 n n CAB HAB CB9 sing 104 n n CAB HABA CB9 sing 105 n n CAB HABB CB9 sing 106 n n OAG HOAG CB9 sing 107 n n OAH HOAH CB9 sing 108 n n CAJ HAJ CB9 sing 109 n n CAK HAK CB9 sing 110 n n CAL HAL CB9 sing 111 n n CAM HAM CB9 sing 112 n n CAN HAN CB9 sing 113 n n NAP HNAP CB9 sing 114 n n CAX HAX CB9 sing 115 n n CAY HAY CB9 sing 116 n n # _atom_sites.entry_id 3OCL _atom_sites.fract_transf_matrix[1][1] 0.014394 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011985 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01113 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 578 159 CL CL . C 3 CB9 A 1 1 1 CB9 CBC . D 4 GOL A 1 2 2 GOL GOL . E 5 HOH A 1 3 3 HOH HOH . E 5 HOH A 2 5 5 HOH HOH . E 5 HOH A 3 6 6 HOH HOH . E 5 HOH A 4 8 8 HOH HOH . E 5 HOH A 5 9 9 HOH HOH . E 5 HOH A 6 10 10 HOH HOH . E 5 HOH A 7 11 11 HOH HOH . E 5 HOH A 8 13 13 HOH HOH . E 5 HOH A 9 14 14 HOH HOH . E 5 HOH A 10 579 1 HOH HOH . E 5 HOH A 11 580 2 HOH HOH . E 5 HOH A 12 581 17 HOH HOH . E 5 HOH A 13 582 18 HOH HOH . E 5 HOH A 14 583 19 HOH HOH . E 5 HOH A 15 584 20 HOH HOH . E 5 HOH A 16 585 21 HOH HOH . E 5 HOH A 17 586 22 HOH HOH . E 5 HOH A 18 587 23 HOH HOH . E 5 HOH A 19 588 24 HOH HOH . E 5 HOH A 20 589 25 HOH HOH . E 5 HOH A 21 590 26 HOH HOH . E 5 HOH A 22 591 27 HOH HOH . E 5 HOH A 23 592 28 HOH HOH . E 5 HOH A 24 593 29 HOH HOH . E 5 HOH A 25 594 30 HOH HOH . E 5 HOH A 26 595 31 HOH HOH . E 5 HOH A 27 596 32 HOH HOH . E 5 HOH A 28 597 33 HOH HOH . E 5 HOH A 29 598 34 HOH HOH . E 5 HOH A 30 599 35 HOH HOH . E 5 HOH A 31 600 36 HOH HOH . E 5 HOH A 32 601 37 HOH HOH . E 5 HOH A 33 602 39 HOH HOH . E 5 HOH A 34 603 40 HOH HOH . E 5 HOH A 35 604 41 HOH HOH . E 5 HOH A 36 605 42 HOH HOH . E 5 HOH A 37 606 44 HOH HOH . E 5 HOH A 38 607 46 HOH HOH . E 5 HOH A 39 608 47 HOH HOH . E 5 HOH A 40 609 48 HOH HOH . E 5 HOH A 41 610 49 HOH HOH . E 5 HOH A 42 611 50 HOH HOH . E 5 HOH A 43 612 52 HOH HOH . E 5 HOH A 44 613 53 HOH HOH . E 5 HOH A 45 614 55 HOH HOH . E 5 HOH A 46 615 56 HOH HOH . E 5 HOH A 47 616 57 HOH HOH . E 5 HOH A 48 617 58 HOH HOH . E 5 HOH A 49 618 59 HOH HOH . E 5 HOH A 50 619 61 HOH HOH . E 5 HOH A 51 620 62 HOH HOH . E 5 HOH A 52 621 63 HOH HOH . E 5 HOH A 53 622 64 HOH HOH . E 5 HOH A 54 623 65 HOH HOH . E 5 HOH A 55 624 66 HOH HOH . E 5 HOH A 56 625 67 HOH HOH . E 5 HOH A 57 626 69 HOH HOH . E 5 HOH A 58 627 70 HOH HOH . E 5 HOH A 59 628 71 HOH HOH . E 5 HOH A 60 629 72 HOH HOH . E 5 HOH A 61 630 73 HOH HOH . E 5 HOH A 62 631 74 HOH HOH . E 5 HOH A 63 632 75 HOH HOH . E 5 HOH A 64 633 77 HOH HOH . E 5 HOH A 65 634 78 HOH HOH . E 5 HOH A 66 635 79 HOH HOH . E 5 HOH A 67 636 80 HOH HOH . E 5 HOH A 68 637 82 HOH HOH . E 5 HOH A 69 638 84 HOH HOH . E 5 HOH A 70 639 87 HOH HOH . E 5 HOH A 71 640 90 HOH HOH . E 5 HOH A 72 641 91 HOH HOH . E 5 HOH A 73 642 92 HOH HOH . E 5 HOH A 74 643 93 HOH HOH . E 5 HOH A 75 644 94 HOH HOH . E 5 HOH A 76 645 95 HOH HOH . E 5 HOH A 77 646 96 HOH HOH . E 5 HOH A 78 647 97 HOH HOH . E 5 HOH A 79 648 102 HOH HOH . E 5 HOH A 80 649 103 HOH HOH . E 5 HOH A 81 650 104 HOH HOH . E 5 HOH A 82 651 106 HOH HOH . E 5 HOH A 83 652 107 HOH HOH . E 5 HOH A 84 653 110 HOH HOH . E 5 HOH A 85 654 112 HOH HOH . E 5 HOH A 86 655 114 HOH HOH . E 5 HOH A 87 656 115 HOH HOH . E 5 HOH A 88 657 116 HOH HOH . E 5 HOH A 89 658 117 HOH HOH . E 5 HOH A 90 659 118 HOH HOH . E 5 HOH A 91 660 119 HOH HOH . E 5 HOH A 92 661 120 HOH HOH . E 5 HOH A 93 662 130 HOH HOH . E 5 HOH A 94 663 131 HOH HOH . E 5 HOH A 95 664 132 HOH HOH . E 5 HOH A 96 665 133 HOH HOH . E 5 HOH A 97 666 134 HOH HOH . E 5 HOH A 98 667 136 HOH HOH . E 5 HOH A 99 668 137 HOH HOH . E 5 HOH A 100 669 138 HOH HOH . E 5 HOH A 101 670 139 HOH HOH . E 5 HOH A 102 671 140 HOH HOH . E 5 HOH A 103 672 141 HOH HOH . E 5 HOH A 104 673 142 HOH HOH . E 5 HOH A 105 674 143 HOH HOH . E 5 HOH A 106 675 144 HOH HOH . E 5 HOH A 107 676 145 HOH HOH . E 5 HOH A 108 677 146 HOH HOH . E 5 HOH A 109 678 147 HOH HOH . E 5 HOH A 110 679 148 HOH HOH . E 5 HOH A 111 680 149 HOH HOH . E 5 HOH A 112 681 150 HOH HOH . E 5 HOH A 113 682 151 HOH HOH . E 5 HOH A 114 683 152 HOH HOH . E 5 HOH A 115 684 153 HOH HOH . E 5 HOH A 116 685 154 HOH HOH . E 5 HOH A 117 686 155 HOH HOH . E 5 HOH A 118 687 156 HOH HOH . E 5 HOH A 119 688 158 HOH HOH . E 5 HOH A 120 689 161 HOH HOH . E 5 HOH A 121 690 162 HOH HOH . E 5 HOH A 122 691 163 HOH HOH . E 5 HOH A 123 692 164 HOH HOH . E 5 HOH A 124 693 165 HOH HOH . E 5 HOH A 125 694 166 HOH HOH . E 5 HOH A 126 695 167 HOH HOH . E 5 HOH A 127 696 168 HOH HOH . E 5 HOH A 128 697 169 HOH HOH . E 5 HOH A 129 698 170 HOH HOH . E 5 HOH A 130 699 171 HOH HOH . E 5 HOH A 131 700 172 HOH HOH . E 5 HOH A 132 701 173 HOH HOH . E 5 HOH A 133 702 174 HOH HOH . E 5 HOH A 134 703 175 HOH HOH . E 5 HOH A 135 704 176 HOH HOH . E 5 HOH A 136 705 177 HOH HOH . E 5 HOH A 137 706 178 HOH HOH . E 5 HOH A 138 707 179 HOH HOH . E 5 HOH A 139 708 180 HOH HOH . E 5 HOH A 140 709 181 HOH HOH . E 5 HOH A 141 710 182 HOH HOH . E 5 HOH A 142 711 183 HOH HOH . E 5 HOH A 143 712 184 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CB9 . . . C 3 6.516 6.234 -17.318 1 27.96 ? C CB9 1 A 1 HETATM 2 N N CB9 . . . C 3 6.799 3.753 -16.973 1 31.46 ? N CB9 1 A 1 HETATM 3 O O CB9 . . . C 3 6.458 6.264 -16.096 1 28.29 ? O CB9 1 A 1 HETATM 4 C CA CB9 . . . C 3 6.49 4.833 -17.946 1 29.31 ? CA CB9 1 A 1 HETATM 5 C CB CB9 . . . C 3 5.11 4.668 -18.63 1 28.95 ? CB CB9 1 A 1 HETATM 6 C CAA CB9 . . . C 3 2.814 2.528 -16.396 1 29.24 ? CAA CB9 1 A 1 HETATM 7 C CAB CB9 . . . C 3 1.724 3.522 -18.41 1 27.65 ? CAB CB9 1 A 1 HETATM 8 O OAD CB9 . . . C 3 1.682 5.702 -15.473 1 29.53 ? OAD CB9 1 A 1 HETATM 9 O OAE CB9 . . . C 3 9.623 2.609 -15.673 1 37.03 ? OAE CB9 1 A 1 HETATM 10 O OAF CB9 . . . C 3 7.644 2.587 -18.661 1 35.25 ? OAF CB9 1 A 1 HETATM 11 O OAG CB9 . . . C 3 1.654 6.536 -17.514 1 28.78 ? OAG CB9 1 A 1 HETATM 12 O OAH CB9 . . . C 3 9.774 0.449 -15.855 1 36.94 ? OAH CB9 1 A 1 HETATM 13 C CAJ CB9 . . . C 3 4.879 -0.179 -14.014 1 40.01 ? CAJ CB9 1 A 1 HETATM 14 C CAK CB9 . . . C 3 4.913 -0.569 -15.347 1 39.58 ? CAK CB9 1 A 1 HETATM 15 C CAL CB9 . . . C 3 5.804 0.75 -13.533 1 39.51 ? CAL CB9 1 A 1 HETATM 16 C CAM CB9 . . . C 3 5.876 -0.027 -16.192 1 38.76 ? CAM CB9 1 A 1 HETATM 17 C CAN CB9 . . . C 3 6.769 1.295 -14.379 1 37.58 ? CAN CB9 1 A 1 HETATM 18 N NAP CB9 . . . C 3 4.102 5.516 -18.035 1 28.71 ? NAP CB9 1 A 1 HETATM 19 S SAQ CB9 . . . C 3 4.377 3.069 -18.518 1 29.32 ? SAQ CB9 1 A 1 HETATM 20 C CAR CB9 . . . C 3 2.124 5.773 -16.641 1 29.01 ? CAR CB9 1 A 1 HETATM 21 C CAS CB9 . . . C 3 9.157 1.515 -16.025 1 36.19 ? CAS CB9 1 A 1 HETATM 22 C CAT CB9 . . . C 3 7.4 2.655 -17.472 1 34.09 ? CAT CB9 1 A 1 HETATM 23 C CAU CB9 . . . C 3 6.796 0.915 -15.72 1 37.45 ? CAU CB9 1 A 1 HETATM 24 C CAX CB9 . . . C 3 3.304 4.918 -16.998 1 29.07 ? CAX CB9 1 A 1 HETATM 25 C CAY CB9 . . . C 3 7.808 1.424 -16.685 1 36.52 ? CAY CB9 1 A 1 HETATM 26 C CAZ CB9 . . . C 3 2.973 3.524 -17.538 1 28.93 ? CAZ CB9 1 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 255 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #