data_3OCN # _model_server_result.job_id pv4VFHTS8ERI48OlaOsFOQ _model_server_result.datetime_utc '2024-11-23 08:38:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ocn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1}' # _entry.id 3OCN # _exptl.entry_id 3OCN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 549.6 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-({(2R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-2-oxoethyl]-4-carboxy-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyridinium _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OCN _cell.length_a 67.081 _cell.length_b 81.812 _cell.length_c 87.789 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OCN _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id C _struct_conn.ptnr1_label_comp_id CTJ _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CTJ _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id OG _struct_conn.ptnr2_label_comp_id SER _struct_conn.ptnr2_label_seq_id 279 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id SER _struct_conn.ptnr2_auth_seq_id 294 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.403 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H25 N6 O7 S2 1' _chem_comp.formula_weight 549.6 _chem_comp.id CTJ _chem_comp.mon_nstd_flag . _chem_comp.name 1-({(2R)-2-[(1R)-1-{[(2Z)-2-(2-amino-1,3-thiazol-4-yl)-2-{[(2-carboxypropan-2-yl)oxy]imino}acetyl]amino}-2-oxoethyl]-4-carboxy-3,6-dihydro-2H-1,3-thiazin-5-yl}methyl)pyridinium _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O CTJ doub 70 n n C CA CTJ sing 71 n n C H CTJ sing 72 n n S1 C2 CTJ sing 73 n n S1 C6 CTJ sing 74 n n C2 C3 CTJ sing 75 n n C2 H2 CTJ sing 76 n n C2 H2A CTJ sing 77 n n C3 C4 CTJ doub 78 n n C3 C3' CTJ sing 79 n n C4 N5 CTJ sing 80 n n C4 C4' CTJ sing 81 n n N5 C6 CTJ sing 82 n n N5 HN5 CTJ sing 83 n n C6 CA CTJ sing 84 n n C6 H6 CTJ sing 85 n n CA N10 CTJ sing 86 n n CA HA CTJ sing 87 n n N10 C11 CTJ sing 88 n n N10 HN10 CTJ sing 89 n n C11 O12 CTJ doub 90 n n C11 C13 CTJ sing 91 n n C13 C14 CTJ sing 92 n n C13 N16 CTJ doub 93 z n C14 C15 CTJ doub 94 n y C14 N19 CTJ sing 95 n y C15 S16 CTJ sing 96 n y C15 H15 CTJ sing 97 n n N16 O17 CTJ sing 98 n n S16 C17 CTJ sing 99 n y C17 N18 CTJ sing 100 n n C17 N19 CTJ doub 101 n y O17 C18 CTJ sing 102 n n C18 C19 CTJ sing 103 n n C18 C20 CTJ sing 104 n n C18 C21 CTJ sing 105 n n N18 HN18 CTJ sing 106 n n N18 HN1A CTJ sing 107 n n C19 H19 CTJ sing 108 n n C19 H19A CTJ sing 109 n n C19 H19B CTJ sing 110 n n C20 H20 CTJ sing 111 n n C20 H20A CTJ sing 112 n n C20 H20B CTJ sing 113 n n C21 O2A CTJ sing 114 n n C21 O2B CTJ doub 115 n n O2A HO2A CTJ sing 116 n n C3' H3' CTJ sing 117 n n C3' "H3'A" CTJ sing 118 n n C4' O4A CTJ sing 119 n n C4' O4B CTJ doub 120 n n O4A HO4A CTJ sing 121 n n C3' N6 CTJ sing 122 n n N6 C26 CTJ doub 123 n y N6 C22 CTJ sing 124 n y C26 C25 CTJ sing 125 n y C25 C24 CTJ doub 126 n y C24 C23 CTJ sing 127 n y C23 C22 CTJ doub 128 n y C26 H26 CTJ sing 129 n n C25 H25 CTJ sing 130 n n C24 H24 CTJ sing 131 n n C23 H23 CTJ sing 132 n n C22 H22 CTJ sing 133 n n # _atom_sites.entry_id 3OCN _atom_sites.fract_transf_matrix[1][1] 0.014907 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CTJ A 1 1 1 CTJ CTD . C 3 HOH A 1 2 2 HOH HOH . C 3 HOH A 2 3 3 HOH HOH . C 3 HOH A 3 4 4 HOH HOH . C 3 HOH A 4 5 5 HOH HOH . C 3 HOH A 5 6 6 HOH HOH . C 3 HOH A 6 7 7 HOH HOH . C 3 HOH A 7 8 8 HOH HOH . C 3 HOH A 8 9 9 HOH HOH . C 3 HOH A 9 12 12 HOH HOH . C 3 HOH A 10 13 13 HOH HOH . C 3 HOH A 11 14 14 HOH HOH . C 3 HOH A 12 578 1 HOH HOH . C 3 HOH A 13 579 17 HOH HOH . C 3 HOH A 14 580 22 HOH HOH . C 3 HOH A 15 581 27 HOH HOH . C 3 HOH A 16 582 35 HOH HOH . C 3 HOH A 17 583 37 HOH HOH . C 3 HOH A 18 584 38 HOH HOH . C 3 HOH A 19 585 40 HOH HOH . C 3 HOH A 20 586 41 HOH HOH . C 3 HOH A 21 587 42 HOH HOH . C 3 HOH A 22 588 43 HOH HOH . C 3 HOH A 23 589 44 HOH HOH . C 3 HOH A 24 590 45 HOH HOH . C 3 HOH A 25 591 46 HOH HOH . C 3 HOH A 26 592 47 HOH HOH . C 3 HOH A 27 593 50 HOH HOH . C 3 HOH A 28 594 54 HOH HOH . C 3 HOH A 29 595 56 HOH HOH . C 3 HOH A 30 596 58 HOH HOH . C 3 HOH A 31 597 59 HOH HOH . C 3 HOH A 32 598 60 HOH HOH . C 3 HOH A 33 599 61 HOH HOH . C 3 HOH A 34 600 62 HOH HOH . C 3 HOH A 35 601 63 HOH HOH . C 3 HOH A 36 602 66 HOH HOH . C 3 HOH A 37 603 1 HOH HOH . C 3 HOH A 38 604 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C CTJ . . . B 2 6.077 4.941 -16.697 1 29.11 ? C CTJ 1 A 1 HETATM 2 O O CTJ . . . B 2 6.136 5.338 -15.541 1 28.93 ? O CTJ 1 A 1 HETATM 3 S S1 CTJ . . . B 2 5.287 1.033 -17.444 1 32.13 ? S1 CTJ 1 A 1 HETATM 4 C C2 CTJ . . . B 2 3.618 0.717 -17.924 1 33.34 ? C2 CTJ 1 A 1 HETATM 5 C C3 CTJ . . . B 2 2.57 1.581 -17.244 1 33.16 ? C3 CTJ 1 A 1 HETATM 6 C C4 CTJ . . . B 2 2.865 2.788 -16.744 1 32.38 ? C4 CTJ 1 A 1 HETATM 7 N N5 CTJ . . . B 2 4.117 3.046 -16.401 1 31.32 ? N5 CTJ 1 A 1 HETATM 8 C C6 CTJ . . . B 2 5.135 2.777 -17.399 1 30.85 ? C6 CTJ 1 A 1 HETATM 9 C CA CTJ . . . B 2 6.423 3.513 -17.019 1 29.82 ? CA CTJ 1 A 1 HETATM 10 N N10 CTJ . . . B 2 7.092 2.948 -15.862 1 29.47 ? N10 CTJ 1 A 1 HETATM 11 C C11 CTJ . . . B 2 8.059 2.042 -15.953 1 30.09 ? C11 CTJ 1 A 1 HETATM 12 O O12 CTJ . . . B 2 8.454 1.564 -17.007 1 29.73 ? O12 CTJ 1 A 1 HETATM 13 C C13 CTJ . . . B 2 8.638 1.642 -14.672 1 30.68 ? C13 CTJ 1 A 1 HETATM 14 C C14 CTJ . . . B 2 9.628 2.544 -14.014 1 30.84 ? C14 CTJ 1 A 1 HETATM 15 C C15 CTJ . . . B 2 10.01 3.784 -14.531 1 30.84 ? C15 CTJ 1 A 1 HETATM 16 N N16 CTJ . . . B 2 8.268 0.486 -14.13 1 30.96 ? N16 CTJ 1 A 1 HETATM 17 S S16 CTJ . . . B 2 11.195 4.654 -13.593 1 31.74 ? S16 CTJ 1 A 1 HETATM 18 C C17 CTJ . . . B 2 11.122 3.285 -12.526 1 31.71 ? C17 CTJ 1 A 1 HETATM 19 O O17 CTJ . . . B 2 7.439 -0.248 -14.73 1 31.31 ? O17 CTJ 1 A 1 HETATM 20 C C18 CTJ . . . B 2 6.998 -1.484 -14.176 1 31.84 ? C18 CTJ 1 A 1 HETATM 21 N N18 CTJ . . . B 2 11.881 3.24 -11.403 1 31.27 ? N18 CTJ 1 A 1 HETATM 22 C C19 CTJ . . . B 2 6.221 -2.232 -15.248 1 32.38 ? C19 CTJ 1 A 1 HETATM 23 N N19 CTJ . . . B 2 10.287 2.272 -12.857 1 31.88 ? N19 CTJ 1 A 1 HETATM 24 C C20 CTJ . . . B 2 6.107 -1.187 -12.975 1 31.4 ? C20 CTJ 1 A 1 HETATM 25 C C21 CTJ . . . B 2 8.184 -2.331 -13.759 1 32.42 ? C21 CTJ 1 A 1 HETATM 26 O O2A CTJ . . . B 2 9.243 -2.264 -14.423 1 32.25 ? O2A CTJ 1 A 1 HETATM 27 O O2B CTJ . . . B 2 8.071 -3.078 -12.764 1 32.56 ? O2B CTJ 1 A 1 HETATM 28 C C3' CTJ . . . B 2 1.168 1.037 -17.166 1 33.35 ? C3' CTJ 1 A 1 HETATM 29 C C4' CTJ . . . B 2 1.903 3.871 -16.6 1 32.76 ? C4' CTJ 1 A 1 HETATM 30 O O4A CTJ . . . B 2 1.003 3.833 -15.726 1 33.58 ? O4A CTJ 1 A 1 HETATM 31 O O4B CTJ . . . B 2 2.031 4.834 -17.377 1 33.9 ? O4B CTJ 1 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #