data_3OCP # _model_server_result.job_id ZmHhQ6gb5Pt3YhQwv4QnrA _model_server_result.datetime_utc '2025-03-04 14:00:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ocp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":250}' # _entry.id 3OCP # _exptl.entry_id 3OCP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OCP _cell.length_a 107.139 _cell.length_b 107.139 _cell.length_c 168.967 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OCP _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3OCP _atom_sites.fract_transf_matrix[1][1] 0.009334 _atom_sites.fract_transf_matrix[1][2] 0.005389 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CMP A 1 250 250 CMP CMP . D 2 CMP B 1 250 250 CMP CMP . E 3 HOH A 1 2 2 HOH HOH . E 3 HOH A 2 3 3 HOH HOH . E 3 HOH A 3 6 6 HOH HOH . E 3 HOH A 4 12 12 HOH HOH . E 3 HOH A 5 13 13 HOH HOH . E 3 HOH A 6 14 14 HOH HOH . E 3 HOH A 7 16 16 HOH HOH . E 3 HOH A 8 20 20 HOH HOH . E 3 HOH A 9 26 26 HOH HOH . E 3 HOH A 10 27 27 HOH HOH . E 3 HOH A 11 28 28 HOH HOH . E 3 HOH A 12 29 29 HOH HOH . E 3 HOH A 13 30 30 HOH HOH . E 3 HOH A 14 35 35 HOH HOH . E 3 HOH A 15 39 39 HOH HOH . E 3 HOH A 16 40 40 HOH HOH . E 3 HOH A 17 44 44 HOH HOH . E 3 HOH A 18 45 45 HOH HOH . E 3 HOH A 19 49 49 HOH HOH . E 3 HOH A 20 50 50 HOH HOH . E 3 HOH A 21 54 54 HOH HOH . E 3 HOH A 22 55 55 HOH HOH . E 3 HOH A 23 58 58 HOH HOH . E 3 HOH A 24 60 60 HOH HOH . E 3 HOH A 25 62 62 HOH HOH . E 3 HOH A 26 66 66 HOH HOH . E 3 HOH A 27 71 71 HOH HOH . E 3 HOH A 28 72 72 HOH HOH . E 3 HOH A 29 78 78 HOH HOH . E 3 HOH A 30 79 79 HOH HOH . E 3 HOH A 31 80 80 HOH HOH . E 3 HOH A 32 82 82 HOH HOH . E 3 HOH A 33 83 83 HOH HOH . E 3 HOH A 34 88 88 HOH HOH . E 3 HOH A 35 228 89 HOH HOH . E 3 HOH A 36 229 91 HOH HOH . E 3 HOH A 37 230 94 HOH HOH . E 3 HOH A 38 231 96 HOH HOH . E 3 HOH A 39 232 99 HOH HOH . E 3 HOH A 40 233 101 HOH HOH . E 3 HOH A 41 234 103 HOH HOH . E 3 HOH A 42 235 104 HOH HOH . E 3 HOH A 43 236 107 HOH HOH . E 3 HOH A 44 237 108 HOH HOH . E 3 HOH A 45 238 109 HOH HOH . E 3 HOH A 46 239 113 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 4 4 HOH HOH . F 3 HOH B 3 5 5 HOH HOH . F 3 HOH B 4 7 7 HOH HOH . F 3 HOH B 5 8 8 HOH HOH . F 3 HOH B 6 9 9 HOH HOH . F 3 HOH B 7 10 10 HOH HOH . F 3 HOH B 8 11 11 HOH HOH . F 3 HOH B 9 15 15 HOH HOH . F 3 HOH B 10 17 17 HOH HOH . F 3 HOH B 11 18 18 HOH HOH . F 3 HOH B 12 19 19 HOH HOH . F 3 HOH B 13 21 21 HOH HOH . F 3 HOH B 14 22 22 HOH HOH . F 3 HOH B 15 23 23 HOH HOH . F 3 HOH B 16 24 24 HOH HOH . F 3 HOH B 17 25 25 HOH HOH . F 3 HOH B 18 31 31 HOH HOH . F 3 HOH B 19 32 32 HOH HOH . F 3 HOH B 20 33 33 HOH HOH . F 3 HOH B 21 34 34 HOH HOH . F 3 HOH B 22 36 36 HOH HOH . F 3 HOH B 23 37 37 HOH HOH . F 3 HOH B 24 38 38 HOH HOH . F 3 HOH B 25 41 41 HOH HOH . F 3 HOH B 26 42 42 HOH HOH . F 3 HOH B 27 43 43 HOH HOH . F 3 HOH B 28 46 46 HOH HOH . F 3 HOH B 29 47 47 HOH HOH . F 3 HOH B 30 48 48 HOH HOH . F 3 HOH B 31 51 51 HOH HOH . F 3 HOH B 32 52 52 HOH HOH . F 3 HOH B 33 56 56 HOH HOH . F 3 HOH B 34 57 57 HOH HOH . F 3 HOH B 35 59 59 HOH HOH . F 3 HOH B 36 63 63 HOH HOH . F 3 HOH B 37 64 64 HOH HOH . F 3 HOH B 38 65 65 HOH HOH . F 3 HOH B 39 67 67 HOH HOH . F 3 HOH B 40 68 68 HOH HOH . F 3 HOH B 41 69 69 HOH HOH . F 3 HOH B 42 74 74 HOH HOH . F 3 HOH B 43 76 76 HOH HOH . F 3 HOH B 44 81 81 HOH HOH . F 3 HOH B 45 85 85 HOH HOH . F 3 HOH B 46 86 86 HOH HOH . F 3 HOH B 47 87 87 HOH HOH . F 3 HOH B 48 228 93 HOH HOH . F 3 HOH B 49 230 97 HOH HOH . F 3 HOH B 50 231 98 HOH HOH . F 3 HOH B 51 232 102 HOH HOH . F 3 HOH B 52 233 105 HOH HOH . F 3 HOH B 53 234 106 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 2 -3.02 33.766 27.353 1 37.34 ? P CMP 250 A 1 HETATM 2 O O1P CMP . . . C 2 -1.859 32.889 27.555 1 43.61 ? O1P CMP 250 A 1 HETATM 3 O O2P CMP . . . C 2 -4.388 33.015 26.845 1 36.02 ? O2P CMP 250 A 1 HETATM 4 O O5' CMP . . . C 2 -3.428 34.491 28.675 1 44.03 ? O5' CMP 250 A 1 HETATM 5 C C5' CMP . . . C 2 -2.437 35.428 29.083 1 40.23 ? C5' CMP 250 A 1 HETATM 6 C C4' CMP . . . C 2 -2.218 36.376 27.947 1 39.7 ? C4' CMP 250 A 1 HETATM 7 O O4' CMP . . . C 2 -1.185 37.352 28.186 1 41.68 ? O4' CMP 250 A 1 HETATM 8 C C3' CMP . . . C 2 -1.747 35.722 26.678 1 38.74 ? C3' CMP 250 A 1 HETATM 9 O O3' CMP . . . C 2 -2.746 34.861 26.165 1 42.92 ? O3' CMP 250 A 1 HETATM 10 C C2' CMP . . . C 2 -1.425 36.954 25.849 1 43.61 ? C2' CMP 250 A 1 HETATM 11 O O2' CMP . . . C 2 -2.612 37.583 25.377 1 43.09 ? O2' CMP 250 A 1 HETATM 12 C C1' CMP . . . C 2 -0.765 37.835 26.92 1 45.32 ? C1' CMP 250 A 1 HETATM 13 N N9 CMP . . . C 2 0.706 37.721 26.872 1 48.86 ? N9 CMP 250 A 1 HETATM 14 C C8 CMP . . . C 2 1.426 36.677 27.275 1 45.52 ? C8 CMP 250 A 1 HETATM 15 N N7 CMP . . . C 2 2.753 36.972 27.075 1 46.91 ? N7 CMP 250 A 1 HETATM 16 C C5 CMP . . . C 2 2.823 38.229 26.533 1 51.29 ? C5 CMP 250 A 1 HETATM 17 C C6 CMP . . . C 2 3.953 39.056 26.119 1 55.34 ? C6 CMP 250 A 1 HETATM 18 N N6 CMP . . . C 2 5.301 38.552 26.271 1 50.4 ? N6 CMP 250 A 1 HETATM 19 N N1 CMP . . . C 2 3.75 40.25 25.616 1 56.99 ? N1 CMP 250 A 1 HETATM 20 C C2 CMP . . . C 2 2.461 40.727 25.484 1 54.93 ? C2 CMP 250 A 1 HETATM 21 N N3 CMP . . . C 2 1.372 39.934 25.887 1 49.22 ? N3 CMP 250 A 1 HETATM 22 C C4 CMP . . . C 2 1.586 38.701 26.405 1 48.11 ? C4 CMP 250 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #