data_3OCX # _model_server_result.job_id OwHPpLcQi5j3_dWQECsruw _model_server_result.datetime_utc '2024-11-13 09:04:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3ocx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":263}' # _entry.id 3OCX # _exptl.entry_id 3OCX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-2'-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OCX _cell.length_a 97.87 _cell.length_b 97.87 _cell.length_c 107.598 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OCX _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 64 A ASP 64 1_555 C MG MG . A MG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.184 ? metalc ? metalc2 A O ASN 66 A ASN 66 1_555 C MG MG . A MG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc3 A OD1 ASP 181 A ASP 181 1_555 C MG MG . A MG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 B O3P 2AM . A 2AM 263 1_555 C MG MG . A MG 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 C MG MG . A MG 264 1_555 D O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? metalc ? metalc6 C MG MG . A MG 264 1_555 D O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id 2AM _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-2'-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P 2AM doub 1 n n P O2P 2AM sing 2 n n P O3P 2AM sing 3 n n P O2' 2AM sing 4 n n O2P HOP2 2AM sing 5 n n O3P HOP3 2AM sing 6 n n C5' O5' 2AM sing 7 n n C5' C4' 2AM sing 8 n n C5' "H5'1" 2AM sing 9 n n C5' "H5'2" 2AM sing 10 n n O5' HO5' 2AM sing 11 n n C4' O4' 2AM sing 12 n n C4' C3' 2AM sing 13 n n C4' H4' 2AM sing 14 n n O4' C1' 2AM sing 15 n n C3' O3' 2AM sing 16 n n C3' C2' 2AM sing 17 n n C3' H3' 2AM sing 18 n n O3' HO3' 2AM sing 19 n n C2' O2' 2AM sing 20 n n C2' C1' 2AM sing 21 n n C2' H2' 2AM sing 22 n n C1' N9 2AM sing 23 n n C1' H1' 2AM sing 24 n n N9 C8 2AM sing 25 n y N9 C4 2AM sing 26 n y C8 N7 2AM doub 27 n y C8 H8 2AM sing 28 n n N7 C5 2AM sing 29 n y C5 C6 2AM sing 30 n y C5 C4 2AM doub 31 n y C6 N6 2AM sing 32 n n C6 N1 2AM doub 33 n y N6 HN61 2AM sing 34 n n N6 HN62 2AM sing 35 n n N1 C2 2AM sing 36 n y C2 N3 2AM doub 37 n y C2 H2 2AM sing 38 n n N3 C4 2AM sing 39 n y # _atom_sites.entry_id 3OCX _atom_sites.fract_transf_matrix[1][1] 0.010218 _atom_sites.fract_transf_matrix[1][2] 0.005899 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011798 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009294 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AM A 1 263 1 2AM 2AM . C 3 MG A 1 264 1 MG MG . D 4 HOH A 1 265 1 HOH HOH . D 4 HOH A 2 266 2 HOH HOH . D 4 HOH A 3 267 3 HOH HOH . D 4 HOH A 4 268 4 HOH HOH . D 4 HOH A 5 269 5 HOH HOH . D 4 HOH A 6 270 6 HOH HOH . D 4 HOH A 7 271 7 HOH HOH . D 4 HOH A 8 272 8 HOH HOH . D 4 HOH A 9 273 9 HOH HOH . D 4 HOH A 10 274 10 HOH HOH . D 4 HOH A 11 275 11 HOH HOH . D 4 HOH A 12 276 12 HOH HOH . D 4 HOH A 13 277 13 HOH HOH . D 4 HOH A 14 278 14 HOH HOH . D 4 HOH A 15 279 15 HOH HOH . D 4 HOH A 16 280 16 HOH HOH . D 4 HOH A 17 281 17 HOH HOH . D 4 HOH A 18 282 18 HOH HOH . D 4 HOH A 19 283 19 HOH HOH . D 4 HOH A 20 284 20 HOH HOH . D 4 HOH A 21 285 21 HOH HOH . D 4 HOH A 22 286 22 HOH HOH . D 4 HOH A 23 287 23 HOH HOH . D 4 HOH A 24 288 24 HOH HOH . D 4 HOH A 25 289 25 HOH HOH . D 4 HOH A 26 290 26 HOH HOH . D 4 HOH A 27 291 27 HOH HOH . D 4 HOH A 28 292 28 HOH HOH . D 4 HOH A 29 293 29 HOH HOH . D 4 HOH A 30 294 30 HOH HOH . D 4 HOH A 31 295 31 HOH HOH . D 4 HOH A 32 296 32 HOH HOH . D 4 HOH A 33 297 33 HOH HOH . D 4 HOH A 34 298 34 HOH HOH . D 4 HOH A 35 299 35 HOH HOH . D 4 HOH A 36 300 36 HOH HOH . D 4 HOH A 37 301 37 HOH HOH . D 4 HOH A 38 302 38 HOH HOH . D 4 HOH A 39 303 39 HOH HOH . D 4 HOH A 40 304 40 HOH HOH . D 4 HOH A 41 305 41 HOH HOH . D 4 HOH A 42 306 42 HOH HOH . D 4 HOH A 43 307 43 HOH HOH . D 4 HOH A 44 308 44 HOH HOH . D 4 HOH A 45 309 45 HOH HOH . D 4 HOH A 46 310 46 HOH HOH . D 4 HOH A 47 311 47 HOH HOH . D 4 HOH A 48 312 48 HOH HOH . D 4 HOH A 49 313 49 HOH HOH . D 4 HOH A 50 314 50 HOH HOH . D 4 HOH A 51 315 51 HOH HOH . D 4 HOH A 52 316 52 HOH HOH . D 4 HOH A 53 317 53 HOH HOH . D 4 HOH A 54 318 54 HOH HOH . D 4 HOH A 55 319 55 HOH HOH . D 4 HOH A 56 320 56 HOH HOH . D 4 HOH A 57 321 57 HOH HOH . D 4 HOH A 58 322 58 HOH HOH . D 4 HOH A 59 323 59 HOH HOH . D 4 HOH A 60 324 60 HOH HOH . D 4 HOH A 61 325 61 HOH HOH . D 4 HOH A 62 326 62 HOH HOH . D 4 HOH A 63 327 63 HOH HOH . D 4 HOH A 64 328 64 HOH HOH . D 4 HOH A 65 329 65 HOH HOH . D 4 HOH A 66 330 66 HOH HOH . D 4 HOH A 67 331 67 HOH HOH . D 4 HOH A 68 332 68 HOH HOH . D 4 HOH A 69 333 69 HOH HOH . D 4 HOH A 70 334 70 HOH HOH . D 4 HOH A 71 335 71 HOH HOH . D 4 HOH A 72 336 72 HOH HOH . D 4 HOH A 73 337 73 HOH HOH . D 4 HOH A 74 338 74 HOH HOH . D 4 HOH A 75 339 75 HOH HOH . D 4 HOH A 76 340 76 HOH HOH . D 4 HOH A 77 341 77 HOH HOH . D 4 HOH A 78 342 78 HOH HOH . D 4 HOH A 79 343 79 HOH HOH . D 4 HOH A 80 344 80 HOH HOH . D 4 HOH A 81 345 81 HOH HOH . D 4 HOH A 82 346 82 HOH HOH . D 4 HOH A 83 347 83 HOH HOH . D 4 HOH A 84 348 84 HOH HOH . D 4 HOH A 85 349 85 HOH HOH . D 4 HOH A 86 350 86 HOH HOH . D 4 HOH A 87 351 87 HOH HOH . D 4 HOH A 88 352 88 HOH HOH . D 4 HOH A 89 353 89 HOH HOH . D 4 HOH A 90 354 90 HOH HOH . D 4 HOH A 91 355 91 HOH HOH . D 4 HOH A 92 356 92 HOH HOH . D 4 HOH A 93 357 93 HOH HOH . D 4 HOH A 94 358 94 HOH HOH . D 4 HOH A 95 359 95 HOH HOH . D 4 HOH A 96 360 96 HOH HOH . D 4 HOH A 97 361 97 HOH HOH . D 4 HOH A 98 362 98 HOH HOH . D 4 HOH A 99 363 99 HOH HOH . D 4 HOH A 100 364 100 HOH HOH . D 4 HOH A 101 365 101 HOH HOH . D 4 HOH A 102 366 102 HOH HOH . D 4 HOH A 103 367 103 HOH HOH . D 4 HOH A 104 368 104 HOH HOH . D 4 HOH A 105 369 105 HOH HOH . D 4 HOH A 106 370 106 HOH HOH . D 4 HOH A 107 371 107 HOH HOH . D 4 HOH A 108 372 108 HOH HOH . D 4 HOH A 109 373 109 HOH HOH . D 4 HOH A 110 374 110 HOH HOH . D 4 HOH A 111 375 111 HOH HOH . D 4 HOH A 112 376 112 HOH HOH . D 4 HOH A 113 377 113 HOH HOH . D 4 HOH A 114 378 114 HOH HOH . D 4 HOH A 115 379 115 HOH HOH . D 4 HOH A 116 380 116 HOH HOH . D 4 HOH A 117 381 117 HOH HOH . D 4 HOH A 118 382 118 HOH HOH . D 4 HOH A 119 383 119 HOH HOH . D 4 HOH A 120 384 120 HOH HOH . D 4 HOH A 121 385 121 HOH HOH . D 4 HOH A 122 386 122 HOH HOH . D 4 HOH A 123 387 123 HOH HOH . D 4 HOH A 124 388 124 HOH HOH . D 4 HOH A 125 389 125 HOH HOH . D 4 HOH A 126 390 126 HOH HOH . D 4 HOH A 127 391 127 HOH HOH . D 4 HOH A 128 392 128 HOH HOH . D 4 HOH A 129 393 129 HOH HOH . D 4 HOH A 130 394 130 HOH HOH . D 4 HOH A 131 395 131 HOH HOH . D 4 HOH A 132 396 132 HOH HOH . D 4 HOH A 133 397 133 HOH HOH . D 4 HOH A 134 398 134 HOH HOH . D 4 HOH A 135 399 135 HOH HOH . D 4 HOH A 136 400 136 HOH HOH . D 4 HOH A 137 401 137 HOH HOH . D 4 HOH A 138 402 138 HOH HOH . D 4 HOH A 139 403 139 HOH HOH . D 4 HOH A 140 404 140 HOH HOH . D 4 HOH A 141 405 141 HOH HOH . D 4 HOH A 142 406 142 HOH HOH . D 4 HOH A 143 407 143 HOH HOH . D 4 HOH A 144 408 144 HOH HOH . D 4 HOH A 145 409 145 HOH HOH . D 4 HOH A 146 410 146 HOH HOH . D 4 HOH A 147 411 147 HOH HOH . D 4 HOH A 148 412 148 HOH HOH . D 4 HOH A 149 413 149 HOH HOH . D 4 HOH A 150 414 150 HOH HOH . D 4 HOH A 151 415 151 HOH HOH . D 4 HOH A 152 416 152 HOH HOH . D 4 HOH A 153 417 153 HOH HOH . D 4 HOH A 154 418 154 HOH HOH . D 4 HOH A 155 419 155 HOH HOH . D 4 HOH A 156 420 156 HOH HOH . D 4 HOH A 157 421 157 HOH HOH . D 4 HOH A 158 422 158 HOH HOH . D 4 HOH A 159 423 159 HOH HOH . D 4 HOH A 160 424 160 HOH HOH . D 4 HOH A 161 425 161 HOH HOH . D 4 HOH A 162 426 162 HOH HOH . D 4 HOH A 163 427 163 HOH HOH . D 4 HOH A 164 428 164 HOH HOH . D 4 HOH A 165 429 165 HOH HOH . D 4 HOH A 166 430 166 HOH HOH . D 4 HOH A 167 431 167 HOH HOH . D 4 HOH A 168 432 168 HOH HOH . D 4 HOH A 169 433 169 HOH HOH . D 4 HOH A 170 434 170 HOH HOH . D 4 HOH A 171 435 171 HOH HOH . D 4 HOH A 172 436 172 HOH HOH . D 4 HOH A 173 437 173 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 2AM . . . B 2 42.865 -13.562 -8.927 1 23.14 ? P 2AM 263 A 1 HETATM 2 O O1P 2AM . . . B 2 42.241 -14.858 -9.368 1 20.53 ? O1P 2AM 263 A 1 HETATM 3 O O2P 2AM . . . B 2 43.103 -12.642 -10.101 1 24.11 ? O2P 2AM 263 A 1 HETATM 4 O O3P 2AM . . . B 2 41.961 -12.961 -7.893 1 17.34 ? O3P 2AM 263 A 1 HETATM 5 C C5' 2AM . . . B 2 47.558 -15.292 -11.079 1 29.63 ? C5' 2AM 263 A 1 HETATM 6 O O5' 2AM . . . B 2 47.41 -13.898 -11.25 1 33.07 ? O5' 2AM 263 A 1 HETATM 7 C C4' 2AM . . . B 2 46.696 -15.78 -9.919 1 26.34 ? C4' 2AM 263 A 1 HETATM 8 O O4' 2AM . . . B 2 47.29 -15.469 -8.675 1 26.22 ? O4' 2AM 263 A 1 HETATM 9 C C3' 2AM . . . B 2 45.329 -15.125 -9.901 1 24.93 ? C3' 2AM 263 A 1 HETATM 10 O O3' 2AM . . . B 2 44.46 -16.146 -9.471 1 24.88 ? O3' 2AM 263 A 1 HETATM 11 C C2' 2AM . . . B 2 45.434 -14.048 -8.842 1 26.05 ? C2' 2AM 263 A 1 HETATM 12 O O2' 2AM . . . B 2 44.226 -13.907 -8.146 1 23.73 ? O2' 2AM 263 A 1 HETATM 13 C C1' 2AM . . . B 2 46.442 -14.649 -7.887 1 23.21 ? C1' 2AM 263 A 1 HETATM 14 N N9 2AM . . . B 2 47.318 -13.713 -7.159 1 20.32 ? N9 2AM 263 A 1 HETATM 15 C C8 2AM . . . B 2 47.465 -13.613 -5.8 1 19.8 ? C8 2AM 263 A 1 HETATM 16 N N7 2AM . . . B 2 48.427 -12.692 -5.544 1 21.99 ? N7 2AM 263 A 1 HETATM 17 C C5 2AM . . . B 2 48.89 -12.226 -6.723 1 18.35 ? C5 2AM 263 A 1 HETATM 18 C C6 2AM . . . B 2 49.86 -11.278 -7.04 1 22.22 ? C6 2AM 263 A 1 HETATM 19 N N6 2AM . . . B 2 50.519 -10.657 -6.072 1 23.42 ? N6 2AM 263 A 1 HETATM 20 N N1 2AM . . . B 2 50.13 -11 -8.354 1 19.81 ? N1 2AM 263 A 1 HETATM 21 C C2 2AM . . . B 2 49.446 -11.654 -9.359 1 26.46 ? C2 2AM 263 A 1 HETATM 22 N N3 2AM . . . B 2 48.477 -12.592 -9.044 1 24.47 ? N3 2AM 263 A 1 HETATM 23 C C4 2AM . . . B 2 48.218 -12.871 -7.744 1 16.46 ? C4 2AM 263 A 1 # _model_server_stats.io_time_ms 44 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 23 _model_server_stats.element_count 23 #