data_3OD0 # _model_server_result.job_id zGck2zmrenSpKtgnzVKmxg _model_server_result.datetime_utc '2025-03-04 14:06:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3od0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":250}' # _entry.id 3OD0 # _exptl.entry_id 3OD0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 345.205 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CYCLIC GUANOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OD0 _cell.length_a 107.625 _cell.length_b 107.625 _cell.length_c 171.391 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OD0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H12 N5 O7 P' _chem_comp.formula_weight 345.205 _chem_comp.id PCG _chem_comp.mon_nstd_flag . _chem_comp.name 'CYCLIC GUANOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A PCG sing 237 n n PA O2A PCG doub 238 n n PA O5' PCG sing 239 n n PA O3' PCG sing 240 n n O1A HO1A PCG sing 241 n n O5' C5' PCG sing 242 n n C5' C4' PCG sing 243 n n C5' "H5'1" PCG sing 244 n n C5' "H5'2" PCG sing 245 n n C4' O4' PCG sing 246 n n C4' C3' PCG sing 247 n n C4' H4' PCG sing 248 n n O4' C1' PCG sing 249 n n C3' O3' PCG sing 250 n n C3' C2' PCG sing 251 n n C3' H3' PCG sing 252 n n C2' O2' PCG sing 253 n n C2' C1' PCG sing 254 n n C2' H2' PCG sing 255 n n O2' HO2' PCG sing 256 n n C1' N9 PCG sing 257 n n C1' H1' PCG sing 258 n n N9 C8 PCG sing 259 n y N9 C4 PCG sing 260 n y C8 N7 PCG doub 261 n y C8 H8 PCG sing 262 n n N7 C5 PCG sing 263 n y C5 C6 PCG sing 264 n n C5 C4 PCG doub 265 n y C6 O6 PCG doub 266 n n C6 N1 PCG sing 267 n n N1 C2 PCG sing 268 n n N1 HN1 PCG sing 269 n n C2 N2 PCG sing 270 n n C2 N3 PCG doub 271 n n N2 HN21 PCG sing 272 n n N2 HN22 PCG sing 273 n n N3 C4 PCG sing 274 n n # _atom_sites.entry_id 3OD0 _atom_sites.fract_transf_matrix[1][1] 0.009292 _atom_sites.fract_transf_matrix[1][2] 0.005364 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005835 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PCG A 1 250 250 PCG PCG . D 2 PCG B 1 250 250 PCG PCG . E 3 HOH A 1 11 11 HOH HOH . E 3 HOH A 2 12 12 HOH HOH . E 3 HOH A 3 13 13 HOH HOH . E 3 HOH A 4 22 22 HOH HOH . F 3 HOH B 1 1 1 HOH HOH . F 3 HOH B 2 2 2 HOH HOH . F 3 HOH B 3 3 3 HOH HOH . F 3 HOH B 4 14 14 HOH HOH . F 3 HOH B 5 15 15 HOH HOH . F 3 HOH B 6 16 16 HOH HOH . F 3 HOH B 7 17 17 HOH HOH . F 3 HOH B 8 18 18 HOH HOH . F 3 HOH B 9 19 19 HOH HOH . F 3 HOH B 10 20 20 HOH HOH . F 3 HOH B 11 21 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA PCG . . . D 2 0.645 -23.112 13.954 1 64.01 ? PA PCG 250 B 1 HETATM 2 O O1A PCG . . . D 2 1.113 -22.977 12.528 1 59.46 ? O1A PCG 250 B 1 HETATM 3 O O2A PCG . . . D 2 0.328 -24.47 14.525 1 66.06 ? O2A PCG 250 B 1 HETATM 4 O O5' PCG . . . D 2 -0.721 -22.296 14.245 1 65.95 ? O5' PCG 250 B 1 HETATM 5 C C5' PCG . . . D 2 -0.995 -21.715 15.517 1 66.73 ? C5' PCG 250 B 1 HETATM 6 C C4' PCG . . . D 2 0.262 -20.963 15.913 1 66.67 ? C4' PCG 250 B 1 HETATM 7 O O4' PCG . . . D 2 0.187 -20.346 17.188 1 68.81 ? O4' PCG 250 B 1 HETATM 8 C C3' PCG . . . D 2 1.417 -21.915 16.096 1 67.04 ? C3' PCG 250 B 1 HETATM 9 O O3' PCG . . . D 2 1.792 -22.378 14.815 1 64.13 ? O3' PCG 250 B 1 HETATM 10 C C2' PCG . . . D 2 2.427 -21.118 16.905 1 69.78 ? C2' PCG 250 B 1 HETATM 11 O O2' PCG . . . D 2 3.278 -20.284 16.128 1 65.48 ? O2' PCG 250 B 1 HETATM 12 C C1' PCG . . . D 2 1.525 -20.198 17.696 1 70.16 ? C1' PCG 250 B 1 HETATM 13 N N9 PCG . . . D 2 1.488 -20.534 19.132 1 74.43 ? N9 PCG 250 B 1 HETATM 14 C C8 PCG . . . D 2 1.821 -19.709 20.14 1 76.95 ? C8 PCG 250 B 1 HETATM 15 N N7 PCG . . . D 2 1.635 -20.311 21.347 1 82.67 ? N7 PCG 250 B 1 HETATM 16 C C5 PCG . . . D 2 1.168 -21.556 21.109 1 84.72 ? C5 PCG 250 B 1 HETATM 17 C C6 PCG . . . D 2 0.766 -22.722 21.933 1 77.88 ? C6 PCG 250 B 1 HETATM 18 O O6 PCG . . . D 2 0.826 -22.664 23.178 1 77.12 ? O6 PCG 250 B 1 HETATM 19 N N1 PCG . . . D 2 0.33 -23.823 21.3 1 77.14 ? N1 PCG 250 B 1 HETATM 20 C C2 PCG . . . D 2 0.256 -23.911 19.953 1 76.7 ? C2 PCG 250 B 1 HETATM 21 N N2 PCG . . . D 2 -0.196 -25.066 19.394 1 71.47 ? N2 PCG 250 B 1 HETATM 22 N N3 PCG . . . D 2 0.613 -22.88 19.135 1 79.03 ? N3 PCG 250 B 1 HETATM 23 C C4 PCG . . . D 2 1.059 -21.696 19.644 1 80.89 ? C4 PCG 250 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #