data_3OD4 # _model_server_result.job_id xoAL5Ym9LjIyY_SAxDUa3g _model_server_result.datetime_utc '2024-11-27 04:50:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3od4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":353}' # _entry.id 3OD4 # _exptl.entry_id 3OD4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OD4 _cell.length_a 86.4 _cell.length_b 86.4 _cell.length_c 147.2 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OD4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.4 86.4 73.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc3 C OAC 8XQ . A 8XQ 350 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? metalc ? metalc4 C NAI 8XQ . A 8XQ 350 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc5 K O HOH . A HOH 490 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 325 n n S O2 SO4 doub 326 n n S O3 SO4 sing 327 n n S O4 SO4 sing 328 n n # _atom_sites.entry_id 3OD4 _atom_sites.fract_transf_matrix[1][1] 0.011574 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011574 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006793 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1350 1350 ZN ZN . C 3 8XQ A 1 350 1 8XQ 8XQ . D 4 SO4 A 1 351 3 SO4 SO4 . E 4 SO4 A 1 352 4 SO4 SO4 . F 4 SO4 A 1 353 5 SO4 SO4 . G 5 GOL A 1 354 1 GOL GOL . H 5 GOL A 1 355 2 GOL GOL . I 5 GOL A 1 356 3 GOL GOL . J 5 GOL A 1 357 4 GOL GOL . K 6 HOH A 1 358 1 HOH HOH . K 6 HOH A 2 359 2 HOH HOH . K 6 HOH A 3 360 3 HOH HOH . K 6 HOH A 4 361 4 HOH HOH . K 6 HOH A 5 362 5 HOH HOH . K 6 HOH A 6 363 6 HOH HOH . K 6 HOH A 7 364 7 HOH HOH . K 6 HOH A 8 365 8 HOH HOH . K 6 HOH A 9 366 9 HOH HOH . K 6 HOH A 10 367 10 HOH HOH . K 6 HOH A 11 368 11 HOH HOH . K 6 HOH A 12 369 12 HOH HOH . K 6 HOH A 13 370 13 HOH HOH . K 6 HOH A 14 371 14 HOH HOH . K 6 HOH A 15 372 15 HOH HOH . K 6 HOH A 16 373 16 HOH HOH . K 6 HOH A 17 374 17 HOH HOH . K 6 HOH A 18 375 18 HOH HOH . K 6 HOH A 19 376 19 HOH HOH . K 6 HOH A 20 377 20 HOH HOH . K 6 HOH A 21 378 21 HOH HOH . K 6 HOH A 22 379 22 HOH HOH . K 6 HOH A 23 380 23 HOH HOH . K 6 HOH A 24 381 24 HOH HOH . K 6 HOH A 25 382 25 HOH HOH . K 6 HOH A 26 383 26 HOH HOH . K 6 HOH A 27 384 27 HOH HOH . K 6 HOH A 28 385 28 HOH HOH . K 6 HOH A 29 386 29 HOH HOH . K 6 HOH A 30 387 30 HOH HOH . K 6 HOH A 31 388 31 HOH HOH . K 6 HOH A 32 389 32 HOH HOH . K 6 HOH A 33 390 33 HOH HOH . K 6 HOH A 34 391 34 HOH HOH . K 6 HOH A 35 392 35 HOH HOH . K 6 HOH A 36 393 36 HOH HOH . K 6 HOH A 37 394 37 HOH HOH . K 6 HOH A 38 395 38 HOH HOH . K 6 HOH A 39 396 39 HOH HOH . K 6 HOH A 40 397 40 HOH HOH . K 6 HOH A 41 398 41 HOH HOH . K 6 HOH A 42 399 42 HOH HOH . K 6 HOH A 43 400 43 HOH HOH . K 6 HOH A 44 401 44 HOH HOH . K 6 HOH A 45 402 45 HOH HOH . K 6 HOH A 46 403 46 HOH HOH . K 6 HOH A 47 404 47 HOH HOH . K 6 HOH A 48 405 48 HOH HOH . K 6 HOH A 49 406 49 HOH HOH . K 6 HOH A 50 407 50 HOH HOH . K 6 HOH A 51 408 51 HOH HOH . K 6 HOH A 52 409 52 HOH HOH . K 6 HOH A 53 410 53 HOH HOH . K 6 HOH A 54 411 54 HOH HOH . K 6 HOH A 55 412 56 HOH HOH . K 6 HOH A 56 413 57 HOH HOH . K 6 HOH A 57 414 58 HOH HOH . K 6 HOH A 58 415 59 HOH HOH . K 6 HOH A 59 416 60 HOH HOH . K 6 HOH A 60 417 61 HOH HOH . K 6 HOH A 61 418 62 HOH HOH . K 6 HOH A 62 419 63 HOH HOH . K 6 HOH A 63 420 64 HOH HOH . K 6 HOH A 64 421 65 HOH HOH . K 6 HOH A 65 422 66 HOH HOH . K 6 HOH A 66 423 67 HOH HOH . K 6 HOH A 67 424 68 HOH HOH . K 6 HOH A 68 425 69 HOH HOH . K 6 HOH A 69 426 70 HOH HOH . K 6 HOH A 70 427 71 HOH HOH . K 6 HOH A 71 428 72 HOH HOH . K 6 HOH A 72 429 73 HOH HOH . K 6 HOH A 73 430 74 HOH HOH . K 6 HOH A 74 431 75 HOH HOH . K 6 HOH A 75 432 76 HOH HOH . K 6 HOH A 76 433 77 HOH HOH . K 6 HOH A 77 434 78 HOH HOH . K 6 HOH A 78 435 79 HOH HOH . K 6 HOH A 79 436 80 HOH HOH . K 6 HOH A 80 437 81 HOH HOH . K 6 HOH A 81 438 82 HOH HOH . K 6 HOH A 82 439 83 HOH HOH . K 6 HOH A 83 440 84 HOH HOH . K 6 HOH A 84 441 85 HOH HOH . K 6 HOH A 85 442 86 HOH HOH . K 6 HOH A 86 443 87 HOH HOH . K 6 HOH A 87 444 89 HOH HOH . K 6 HOH A 88 445 90 HOH HOH . K 6 HOH A 89 446 91 HOH HOH . K 6 HOH A 90 447 92 HOH HOH . K 6 HOH A 91 448 93 HOH HOH . K 6 HOH A 92 449 94 HOH HOH . K 6 HOH A 93 450 95 HOH HOH . K 6 HOH A 94 451 96 HOH HOH . K 6 HOH A 95 452 97 HOH HOH . K 6 HOH A 96 453 98 HOH HOH . K 6 HOH A 97 454 99 HOH HOH . K 6 HOH A 98 455 100 HOH HOH . K 6 HOH A 99 456 101 HOH HOH . K 6 HOH A 100 457 102 HOH HOH . K 6 HOH A 101 458 103 HOH HOH . K 6 HOH A 102 459 104 HOH HOH . K 6 HOH A 103 460 105 HOH HOH . K 6 HOH A 104 461 106 HOH HOH . K 6 HOH A 105 462 107 HOH HOH . K 6 HOH A 106 463 108 HOH HOH . K 6 HOH A 107 464 109 HOH HOH . K 6 HOH A 108 465 110 HOH HOH . K 6 HOH A 109 466 111 HOH HOH . K 6 HOH A 110 467 112 HOH HOH . K 6 HOH A 111 468 113 HOH HOH . K 6 HOH A 112 469 114 HOH HOH . K 6 HOH A 113 470 115 HOH HOH . K 6 HOH A 114 471 117 HOH HOH . K 6 HOH A 115 472 118 HOH HOH . K 6 HOH A 116 473 121 HOH HOH . K 6 HOH A 117 474 122 HOH HOH . K 6 HOH A 118 475 123 HOH HOH . K 6 HOH A 119 476 124 HOH HOH . K 6 HOH A 120 477 125 HOH HOH . K 6 HOH A 121 478 126 HOH HOH . K 6 HOH A 122 479 129 HOH HOH . K 6 HOH A 123 480 130 HOH HOH . K 6 HOH A 124 481 132 HOH HOH . K 6 HOH A 125 482 134 HOH HOH . K 6 HOH A 126 483 135 HOH HOH . K 6 HOH A 127 484 136 HOH HOH . K 6 HOH A 128 485 137 HOH HOH . K 6 HOH A 129 486 138 HOH HOH . K 6 HOH A 130 487 141 HOH HOH . K 6 HOH A 131 488 142 HOH HOH . K 6 HOH A 132 489 143 HOH HOH . K 6 HOH A 133 490 144 HOH HOH . K 6 HOH A 134 491 155 HOH HOH . K 6 HOH A 135 492 156 HOH HOH . K 6 HOH A 136 493 157 HOH HOH . K 6 HOH A 137 494 158 HOH HOH . K 6 HOH A 138 495 159 HOH HOH . K 6 HOH A 139 496 160 HOH HOH . K 6 HOH A 140 497 161 HOH HOH . K 6 HOH A 141 498 162 HOH HOH . K 6 HOH A 142 499 163 HOH HOH . K 6 HOH A 143 500 164 HOH HOH . K 6 HOH A 144 501 165 HOH HOH . K 6 HOH A 145 502 166 HOH HOH . K 6 HOH A 146 503 167 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . F 4 2.379 28.117 30.546 1 150.22 ? S SO4 353 A 1 HETATM 2 O O1 SO4 . . . F 4 1.666 27.369 31.585 1 149.28 ? O1 SO4 353 A 1 HETATM 3 O O2 SO4 . . . F 4 3.675 28.557 31.064 1 150.08 ? O2 SO4 353 A 1 HETATM 4 O O3 SO4 . . . F 4 2.57 27.269 29.366 1 149.75 ? O3 SO4 353 A 1 HETATM 5 O O4 SO4 . . . F 4 1.611 29.296 30.155 1 150.64 ? O4 SO4 353 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #