data_3OD4
#
_model_server_result.job_id            p-5C72ykw7vtlaIIdaJLgw 
_model_server_result.datetime_utc      '2024-10-20 01:30:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3od4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":354}' 
#
_entry.id    3OD4 
#
_exptl.entry_id    3OD4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OD4 
_cell.length_a            86.4 
_cell.length_b            86.4 
_cell.length_c            147.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OD4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.4 86.4 73.6 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 G N N 
? 5 H N N 
? 5 I N N 
? 5 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 199 A HIS 199 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc2 A OD2 ASP 201 A ASP 201 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc3 C OAC 8XQ . A 8XQ 350 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc4 C NAI 8XQ . A 8XQ 350 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? 
metalc ? metalc5 K O HOH . A HOH 490 1_555 B ZN ZN . A ZN 1350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 151 n n 
C1 C2 GOL sing 152 n n 
C1 H11 GOL sing 153 n n 
C1 H12 GOL sing 154 n n 
O1 HO1 GOL sing 155 n n 
C2 O2 GOL sing 156 n n 
C2 C3 GOL sing 157 n n 
C2 H2 GOL sing 158 n n 
O2 HO2 GOL sing 159 n n 
C3 O3 GOL sing 160 n n 
C3 H31 GOL sing 161 n n 
C3 H32 GOL sing 162 n n 
O3 HO3 GOL sing 163 n n 
#
_atom_sites.entry_id                     3OD4 
_atom_sites.fract_transf_matrix[1][1]    0.011574 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011574 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006793 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1350 1350 ZN ZN . 
C 3 8XQ A 1 350 1 8XQ 8XQ . 
D 4 SO4 A 1 351 3 SO4 SO4 . 
E 4 SO4 A 1 352 4 SO4 SO4 . 
F 4 SO4 A 1 353 5 SO4 SO4 . 
G 5 GOL A 1 354 1 GOL GOL . 
H 5 GOL A 1 355 2 GOL GOL . 
I 5 GOL A 1 356 3 GOL GOL . 
J 5 GOL A 1 357 4 GOL GOL . 
K 6 HOH A 1 358 1 HOH HOH . 
K 6 HOH A 2 359 2 HOH HOH . 
K 6 HOH A 3 360 3 HOH HOH . 
K 6 HOH A 4 361 4 HOH HOH . 
K 6 HOH A 5 362 5 HOH HOH . 
K 6 HOH A 6 363 6 HOH HOH . 
K 6 HOH A 7 364 7 HOH HOH . 
K 6 HOH A 8 365 8 HOH HOH . 
K 6 HOH A 9 366 9 HOH HOH . 
K 6 HOH A 10 367 10 HOH HOH . 
K 6 HOH A 11 368 11 HOH HOH . 
K 6 HOH A 12 369 12 HOH HOH . 
K 6 HOH A 13 370 13 HOH HOH . 
K 6 HOH A 14 371 14 HOH HOH . 
K 6 HOH A 15 372 15 HOH HOH . 
K 6 HOH A 16 373 16 HOH HOH . 
K 6 HOH A 17 374 17 HOH HOH . 
K 6 HOH A 18 375 18 HOH HOH . 
K 6 HOH A 19 376 19 HOH HOH . 
K 6 HOH A 20 377 20 HOH HOH . 
K 6 HOH A 21 378 21 HOH HOH . 
K 6 HOH A 22 379 22 HOH HOH . 
K 6 HOH A 23 380 23 HOH HOH . 
K 6 HOH A 24 381 24 HOH HOH . 
K 6 HOH A 25 382 25 HOH HOH . 
K 6 HOH A 26 383 26 HOH HOH . 
K 6 HOH A 27 384 27 HOH HOH . 
K 6 HOH A 28 385 28 HOH HOH . 
K 6 HOH A 29 386 29 HOH HOH . 
K 6 HOH A 30 387 30 HOH HOH . 
K 6 HOH A 31 388 31 HOH HOH . 
K 6 HOH A 32 389 32 HOH HOH . 
K 6 HOH A 33 390 33 HOH HOH . 
K 6 HOH A 34 391 34 HOH HOH . 
K 6 HOH A 35 392 35 HOH HOH . 
K 6 HOH A 36 393 36 HOH HOH . 
K 6 HOH A 37 394 37 HOH HOH . 
K 6 HOH A 38 395 38 HOH HOH . 
K 6 HOH A 39 396 39 HOH HOH . 
K 6 HOH A 40 397 40 HOH HOH . 
K 6 HOH A 41 398 41 HOH HOH . 
K 6 HOH A 42 399 42 HOH HOH . 
K 6 HOH A 43 400 43 HOH HOH . 
K 6 HOH A 44 401 44 HOH HOH . 
K 6 HOH A 45 402 45 HOH HOH . 
K 6 HOH A 46 403 46 HOH HOH . 
K 6 HOH A 47 404 47 HOH HOH . 
K 6 HOH A 48 405 48 HOH HOH . 
K 6 HOH A 49 406 49 HOH HOH . 
K 6 HOH A 50 407 50 HOH HOH . 
K 6 HOH A 51 408 51 HOH HOH . 
K 6 HOH A 52 409 52 HOH HOH . 
K 6 HOH A 53 410 53 HOH HOH . 
K 6 HOH A 54 411 54 HOH HOH . 
K 6 HOH A 55 412 56 HOH HOH . 
K 6 HOH A 56 413 57 HOH HOH . 
K 6 HOH A 57 414 58 HOH HOH . 
K 6 HOH A 58 415 59 HOH HOH . 
K 6 HOH A 59 416 60 HOH HOH . 
K 6 HOH A 60 417 61 HOH HOH . 
K 6 HOH A 61 418 62 HOH HOH . 
K 6 HOH A 62 419 63 HOH HOH . 
K 6 HOH A 63 420 64 HOH HOH . 
K 6 HOH A 64 421 65 HOH HOH . 
K 6 HOH A 65 422 66 HOH HOH . 
K 6 HOH A 66 423 67 HOH HOH . 
K 6 HOH A 67 424 68 HOH HOH . 
K 6 HOH A 68 425 69 HOH HOH . 
K 6 HOH A 69 426 70 HOH HOH . 
K 6 HOH A 70 427 71 HOH HOH . 
K 6 HOH A 71 428 72 HOH HOH . 
K 6 HOH A 72 429 73 HOH HOH . 
K 6 HOH A 73 430 74 HOH HOH . 
K 6 HOH A 74 431 75 HOH HOH . 
K 6 HOH A 75 432 76 HOH HOH . 
K 6 HOH A 76 433 77 HOH HOH . 
K 6 HOH A 77 434 78 HOH HOH . 
K 6 HOH A 78 435 79 HOH HOH . 
K 6 HOH A 79 436 80 HOH HOH . 
K 6 HOH A 80 437 81 HOH HOH . 
K 6 HOH A 81 438 82 HOH HOH . 
K 6 HOH A 82 439 83 HOH HOH . 
K 6 HOH A 83 440 84 HOH HOH . 
K 6 HOH A 84 441 85 HOH HOH . 
K 6 HOH A 85 442 86 HOH HOH . 
K 6 HOH A 86 443 87 HOH HOH . 
K 6 HOH A 87 444 89 HOH HOH . 
K 6 HOH A 88 445 90 HOH HOH . 
K 6 HOH A 89 446 91 HOH HOH . 
K 6 HOH A 90 447 92 HOH HOH . 
K 6 HOH A 91 448 93 HOH HOH . 
K 6 HOH A 92 449 94 HOH HOH . 
K 6 HOH A 93 450 95 HOH HOH . 
K 6 HOH A 94 451 96 HOH HOH . 
K 6 HOH A 95 452 97 HOH HOH . 
K 6 HOH A 96 453 98 HOH HOH . 
K 6 HOH A 97 454 99 HOH HOH . 
K 6 HOH A 98 455 100 HOH HOH . 
K 6 HOH A 99 456 101 HOH HOH . 
K 6 HOH A 100 457 102 HOH HOH . 
K 6 HOH A 101 458 103 HOH HOH . 
K 6 HOH A 102 459 104 HOH HOH . 
K 6 HOH A 103 460 105 HOH HOH . 
K 6 HOH A 104 461 106 HOH HOH . 
K 6 HOH A 105 462 107 HOH HOH . 
K 6 HOH A 106 463 108 HOH HOH . 
K 6 HOH A 107 464 109 HOH HOH . 
K 6 HOH A 108 465 110 HOH HOH . 
K 6 HOH A 109 466 111 HOH HOH . 
K 6 HOH A 110 467 112 HOH HOH . 
K 6 HOH A 111 468 113 HOH HOH . 
K 6 HOH A 112 469 114 HOH HOH . 
K 6 HOH A 113 470 115 HOH HOH . 
K 6 HOH A 114 471 117 HOH HOH . 
K 6 HOH A 115 472 118 HOH HOH . 
K 6 HOH A 116 473 121 HOH HOH . 
K 6 HOH A 117 474 122 HOH HOH . 
K 6 HOH A 118 475 123 HOH HOH . 
K 6 HOH A 119 476 124 HOH HOH . 
K 6 HOH A 120 477 125 HOH HOH . 
K 6 HOH A 121 478 126 HOH HOH . 
K 6 HOH A 122 479 129 HOH HOH . 
K 6 HOH A 123 480 130 HOH HOH . 
K 6 HOH A 124 481 132 HOH HOH . 
K 6 HOH A 125 482 134 HOH HOH . 
K 6 HOH A 126 483 135 HOH HOH . 
K 6 HOH A 127 484 136 HOH HOH . 
K 6 HOH A 128 485 137 HOH HOH . 
K 6 HOH A 129 486 138 HOH HOH . 
K 6 HOH A 130 487 141 HOH HOH . 
K 6 HOH A 131 488 142 HOH HOH . 
K 6 HOH A 132 489 143 HOH HOH . 
K 6 HOH A 133 490 144 HOH HOH . 
K 6 HOH A 134 491 155 HOH HOH . 
K 6 HOH A 135 492 156 HOH HOH . 
K 6 HOH A 136 493 157 HOH HOH . 
K 6 HOH A 137 494 158 HOH HOH . 
K 6 HOH A 138 495 159 HOH HOH . 
K 6 HOH A 139 496 160 HOH HOH . 
K 6 HOH A 140 497 161 HOH HOH . 
K 6 HOH A 141 498 162 HOH HOH . 
K 6 HOH A 142 499 163 HOH HOH . 
K 6 HOH A 143 500 164 HOH HOH . 
K 6 HOH A 144 501 165 HOH HOH . 
K 6 HOH A 145 502 166 HOH HOH . 
K 6 HOH A 146 503 167 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 5 27.379 8.082 29.943 1 87.82 ? C1 GOL 354 A 1 
HETATM 2 O O1 GOL . . . G 5 28.521 7.869 29.14 1 90.95 ? O1 GOL 354 A 1 
HETATM 3 C C2 GOL . . . G 5 26.197 7.26 29.425 1 88.15 ? C2 GOL 354 A 1 
HETATM 4 O O2 GOL . . . G 5 25.221 7.156 30.428 1 89.59 ? O2 GOL 354 A 1 
HETATM 5 C C3 GOL . . . G 5 26.593 5.856 28.972 1 87.51 ? C3 GOL 354 A 1 
HETATM 6 O O3 GOL . . . G 5 25.427 5.119 28.651 1 85.48 ? O3 GOL 354 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#