data_3OD6 # _model_server_result.job_id 1aRMRn1kZd2AYqgAvd2exw _model_server_result.datetime_utc '2024-11-25 03:02:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3od6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1000}' # _entry.id 3OD6 # _exptl.entry_id 3OD6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.28 _cell.angle_gamma 90 _cell.entry_id 3OD6 _cell.length_a 40.332 _cell.length_b 71.766 _cell.length_c 70.96 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OD6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 3OD6 _atom_sites.fract_transf_matrix[1][1] 0.024794 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000123 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013934 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014093 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BOG X 1 1000 1000 BOG BOG . C 3 HOH X 1 361 1 HOH HOH . C 3 HOH X 2 362 2 HOH HOH . C 3 HOH X 3 363 3 HOH HOH . C 3 HOH X 4 364 4 HOH HOH . C 3 HOH X 5 365 5 HOH HOH . C 3 HOH X 6 366 6 HOH HOH . C 3 HOH X 7 367 8 HOH HOH . C 3 HOH X 8 368 9 HOH HOH . C 3 HOH X 9 369 11 HOH HOH . C 3 HOH X 10 370 12 HOH HOH . C 3 HOH X 11 371 13 HOH HOH . C 3 HOH X 12 372 14 HOH HOH . C 3 HOH X 13 373 15 HOH HOH . C 3 HOH X 14 374 16 HOH HOH . C 3 HOH X 15 375 17 HOH HOH . C 3 HOH X 16 376 20 HOH HOH . C 3 HOH X 17 377 22 HOH HOH . C 3 HOH X 18 378 23 HOH HOH . C 3 HOH X 19 379 24 HOH HOH . C 3 HOH X 20 380 25 HOH HOH . C 3 HOH X 21 381 27 HOH HOH . C 3 HOH X 22 382 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . B 2 8.376 20.698 17.657 1 46.45 ? C1 BOG 1000 X 1 HETATM 2 O O1 BOG . . . B 2 7.568 20.453 16.552 1 46.1 ? O1 BOG 1000 X 1 HETATM 3 C C2 BOG . . . B 2 7.649 21.733 18.497 1 57.97 ? C2 BOG 1000 X 1 HETATM 4 O O2 BOG . . . B 2 7.592 22.956 17.837 1 64.13 ? O2 BOG 1000 X 1 HETATM 5 C C3 BOG . . . B 2 8.236 21.797 19.806 1 65.26 ? C3 BOG 1000 X 1 HETATM 6 O O3 BOG . . . B 2 7.604 22.842 20.63 1 76.4 ? O3 BOG 1000 X 1 HETATM 7 C C4 BOG . . . B 2 8.106 20.537 20.436 1 62.02 ? C4 BOG 1000 X 1 HETATM 8 O O4 BOG . . . B 2 8.542 20.564 21.767 1 64.25 ? O4 BOG 1000 X 1 HETATM 9 C C5 BOG . . . B 2 8.883 19.493 19.679 1 56.59 ? C5 BOG 1000 X 1 HETATM 10 O O5 BOG . . . B 2 8.509 19.466 18.283 1 52.07 ? O5 BOG 1000 X 1 HETATM 11 C C6 BOG . . . B 2 8.746 18.166 20.345 1 56.27 ? C6 BOG 1000 X 1 HETATM 12 O O6 BOG . . . B 2 7.928 17.152 19.799 1 53.75 ? O6 BOG 1000 X 1 HETATM 13 C C1' BOG . . . B 2 8.146 19.791 15.468 1 48.94 ? C1' BOG 1000 X 1 HETATM 14 C C2' BOG . . . B 2 8.838 20.685 14.468 1 51.12 ? C2' BOG 1000 X 1 HETATM 15 C C3' BOG . . . B 2 9.932 20.01 13.66 1 56.32 ? C3' BOG 1000 X 1 HETATM 16 C C4' BOG . . . B 2 10.9 20.94 12.962 1 61.18 ? C4' BOG 1000 X 1 HETATM 17 C C5' BOG . . . B 2 10.78 21.028 11.452 1 57.11 ? C5' BOG 1000 X 1 HETATM 18 C C6' BOG . . . B 2 11.792 20.289 10.628 1 52.7 ? C6' BOG 1000 X 1 HETATM 19 C C7' BOG . . . B 2 12.291 20.995 9.342 1 58.36 ? C7' BOG 1000 X 1 HETATM 20 C C8' BOG . . . B 2 12.041 20.277 8.056 1 68.93 ? C8' BOG 1000 X 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #