data_3ODG # _model_server_result.job_id iLplKPJzISPQ5Dw-H8yIjA _model_server_result.datetime_utc '2024-11-24 00:06:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3odg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":288}' # _entry.id 3ODG # _exptl.entry_id 3ODG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 152.111 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description XANTHINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ODG _cell.length_a 96.47 _cell.length_b 96.47 _cell.length_c 48.906 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ODG _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -y-1,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 -96.47 0 0 3 'crystal symmetry operation' 3_445 -x+y-1,-x-1,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 -48.235 -83.545471 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N4 O2' _chem_comp.formula_weight 152.111 _chem_comp.id XAN _chem_comp.mon_nstd_flag . _chem_comp.name XANTHINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N9 C4 XAN sing 348 n y N9 C8 XAN sing 349 n y N9 HN9 XAN sing 350 n n C4 N3 XAN sing 351 n y C4 C5 XAN doub 352 n y N3 C2 XAN sing 353 n y N3 HN3 XAN sing 354 n n C2 O2 XAN doub 355 n n C2 N1 XAN sing 356 n y N1 C6 XAN sing 357 n y N1 HN1 XAN sing 358 n n C6 O6 XAN doub 359 n n C6 C5 XAN sing 360 n y C5 N7 XAN sing 361 n y N7 C8 XAN doub 362 n y C8 H8 XAN sing 363 n n # _atom_sites.entry_id 3ODG _atom_sites.fract_transf_matrix[1][1] 0.010366 _atom_sites.fract_transf_matrix[1][2] 0.005985 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020447 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XAN A 1 288 1 XAN XAN . C 3 CL A 1 289 1 CL CL . D 4 HOH A 1 290 1 HOH HOH . D 4 HOH A 2 291 2 HOH HOH . D 4 HOH A 3 292 3 HOH HOH . D 4 HOH A 4 293 4 HOH HOH . D 4 HOH A 5 294 5 HOH HOH . D 4 HOH A 6 295 6 HOH HOH . D 4 HOH A 7 296 7 HOH HOH . D 4 HOH A 8 297 8 HOH HOH . D 4 HOH A 9 298 9 HOH HOH . D 4 HOH A 10 299 10 HOH HOH . D 4 HOH A 11 300 11 HOH HOH . D 4 HOH A 12 301 12 HOH HOH . D 4 HOH A 13 302 13 HOH HOH . D 4 HOH A 14 303 14 HOH HOH . D 4 HOH A 15 304 15 HOH HOH . D 4 HOH A 16 305 16 HOH HOH . D 4 HOH A 17 306 17 HOH HOH . D 4 HOH A 18 307 18 HOH HOH . D 4 HOH A 19 308 19 HOH HOH . D 4 HOH A 20 309 20 HOH HOH . D 4 HOH A 21 310 21 HOH HOH . D 4 HOH A 22 311 22 HOH HOH . D 4 HOH A 23 312 23 HOH HOH . D 4 HOH A 24 313 24 HOH HOH . D 4 HOH A 25 314 25 HOH HOH . D 4 HOH A 26 315 26 HOH HOH . D 4 HOH A 27 316 27 HOH HOH . D 4 HOH A 28 317 28 HOH HOH . D 4 HOH A 29 318 29 HOH HOH . D 4 HOH A 30 319 30 HOH HOH . D 4 HOH A 31 320 31 HOH HOH . D 4 HOH A 32 321 32 HOH HOH . D 4 HOH A 33 322 33 HOH HOH . D 4 HOH A 34 323 34 HOH HOH . D 4 HOH A 35 324 35 HOH HOH . D 4 HOH A 36 325 36 HOH HOH . D 4 HOH A 37 326 37 HOH HOH . D 4 HOH A 38 327 38 HOH HOH . D 4 HOH A 39 328 39 HOH HOH . D 4 HOH A 40 329 40 HOH HOH . D 4 HOH A 41 330 41 HOH HOH . D 4 HOH A 42 331 42 HOH HOH . D 4 HOH A 43 332 43 HOH HOH . D 4 HOH A 44 333 44 HOH HOH . D 4 HOH A 45 334 45 HOH HOH . D 4 HOH A 46 335 46 HOH HOH . D 4 HOH A 47 336 47 HOH HOH . D 4 HOH A 48 337 48 HOH HOH . D 4 HOH A 49 338 49 HOH HOH . D 4 HOH A 50 339 50 HOH HOH . D 4 HOH A 51 340 51 HOH HOH . D 4 HOH A 52 341 52 HOH HOH . D 4 HOH A 53 342 53 HOH HOH . D 4 HOH A 54 343 54 HOH HOH . D 4 HOH A 55 344 55 HOH HOH . D 4 HOH A 56 345 56 HOH HOH . D 4 HOH A 57 346 57 HOH HOH . D 4 HOH A 58 347 58 HOH HOH . D 4 HOH A 59 348 59 HOH HOH . D 4 HOH A 60 349 60 HOH HOH . D 4 HOH A 61 350 61 HOH HOH . D 4 HOH A 62 351 62 HOH HOH . D 4 HOH A 63 352 63 HOH HOH . D 4 HOH A 64 353 64 HOH HOH . D 4 HOH A 65 354 65 HOH HOH . D 4 HOH A 66 355 66 HOH HOH . D 4 HOH A 67 356 67 HOH HOH . D 4 HOH A 68 357 68 HOH HOH . D 4 HOH A 69 358 69 HOH HOH . D 4 HOH A 70 359 70 HOH HOH . D 4 HOH A 71 360 71 HOH HOH . D 4 HOH A 72 361 72 HOH HOH . D 4 HOH A 73 362 73 HOH HOH . D 4 HOH A 74 363 74 HOH HOH . D 4 HOH A 75 364 75 HOH HOH . D 4 HOH A 76 365 76 HOH HOH . D 4 HOH A 77 366 77 HOH HOH . D 4 HOH A 78 367 78 HOH HOH . D 4 HOH A 79 368 79 HOH HOH . D 4 HOH A 80 369 80 HOH HOH . D 4 HOH A 81 370 81 HOH HOH . D 4 HOH A 82 371 82 HOH HOH . D 4 HOH A 83 372 83 HOH HOH . D 4 HOH A 84 373 84 HOH HOH . D 4 HOH A 85 374 85 HOH HOH . D 4 HOH A 86 375 86 HOH HOH . D 4 HOH A 87 376 87 HOH HOH . D 4 HOH A 88 377 88 HOH HOH . D 4 HOH A 89 378 89 HOH HOH . D 4 HOH A 90 379 90 HOH HOH . D 4 HOH A 91 380 91 HOH HOH . D 4 HOH A 92 381 92 HOH HOH . D 4 HOH A 93 382 93 HOH HOH . D 4 HOH A 94 383 94 HOH HOH . D 4 HOH A 95 384 95 HOH HOH . D 4 HOH A 96 385 96 HOH HOH . D 4 HOH A 97 386 97 HOH HOH . D 4 HOH A 98 387 98 HOH HOH . D 4 HOH A 99 388 99 HOH HOH . D 4 HOH A 100 389 100 HOH HOH . D 4 HOH A 101 390 101 HOH HOH . D 4 HOH A 102 391 102 HOH HOH . D 4 HOH A 103 392 103 HOH HOH . D 4 HOH A 104 393 104 HOH HOH . D 4 HOH A 105 394 105 HOH HOH . D 4 HOH A 106 395 106 HOH HOH . D 4 HOH A 107 396 107 HOH HOH . D 4 HOH A 108 397 108 HOH HOH . D 4 HOH A 109 398 109 HOH HOH . D 4 HOH A 110 399 110 HOH HOH . D 4 HOH A 111 400 111 HOH HOH . D 4 HOH A 112 401 112 HOH HOH . D 4 HOH A 113 402 113 HOH HOH . D 4 HOH A 114 403 114 HOH HOH . D 4 HOH A 115 404 115 HOH HOH . D 4 HOH A 116 405 116 HOH HOH . D 4 HOH A 117 406 117 HOH HOH . D 4 HOH A 118 407 118 HOH HOH . D 4 HOH A 119 408 119 HOH HOH . D 4 HOH A 120 409 120 HOH HOH . D 4 HOH A 121 410 121 HOH HOH . D 4 HOH A 122 411 122 HOH HOH . D 4 HOH A 123 412 123 HOH HOH . D 4 HOH A 124 413 124 HOH HOH . D 4 HOH A 125 414 125 HOH HOH . D 4 HOH A 126 415 126 HOH HOH . D 4 HOH A 127 416 127 HOH HOH . D 4 HOH A 128 417 128 HOH HOH . D 4 HOH A 129 418 129 HOH HOH . D 4 HOH A 130 419 130 HOH HOH . D 4 HOH A 131 420 131 HOH HOH . D 4 HOH A 132 421 132 HOH HOH . D 4 HOH A 133 422 133 HOH HOH . D 4 HOH A 134 423 134 HOH HOH . D 4 HOH A 135 424 135 HOH HOH . D 4 HOH A 136 425 136 HOH HOH . D 4 HOH A 137 426 137 HOH HOH . D 4 HOH A 138 427 138 HOH HOH . D 4 HOH A 139 428 139 HOH HOH . D 4 HOH A 140 429 140 HOH HOH . D 4 HOH A 141 430 141 HOH HOH . D 4 HOH A 142 431 142 HOH HOH . D 4 HOH A 143 432 143 HOH HOH . D 4 HOH A 144 433 144 HOH HOH . D 4 HOH A 145 434 145 HOH HOH . D 4 HOH A 146 435 146 HOH HOH . D 4 HOH A 147 436 147 HOH HOH . D 4 HOH A 148 437 148 HOH HOH . D 4 HOH A 149 438 149 HOH HOH . D 4 HOH A 150 439 150 HOH HOH . D 4 HOH A 151 440 151 HOH HOH . D 4 HOH A 152 441 152 HOH HOH . D 4 HOH A 153 442 153 HOH HOH . D 4 HOH A 154 443 154 HOH HOH . D 4 HOH A 155 444 155 HOH HOH . D 4 HOH A 156 445 156 HOH HOH . D 4 HOH A 157 446 157 HOH HOH . D 4 HOH A 158 447 158 HOH HOH . D 4 HOH A 159 448 159 HOH HOH . D 4 HOH A 160 449 160 HOH HOH . D 4 HOH A 161 450 161 HOH HOH . D 4 HOH A 162 451 162 HOH HOH . D 4 HOH A 163 452 163 HOH HOH . D 4 HOH A 164 453 164 HOH HOH . D 4 HOH A 165 454 165 HOH HOH . D 4 HOH A 166 455 166 HOH HOH . D 4 HOH A 167 456 167 HOH HOH . D 4 HOH A 168 457 168 HOH HOH . D 4 HOH A 169 458 169 HOH HOH . D 4 HOH A 170 459 170 HOH HOH . D 4 HOH A 171 460 171 HOH HOH . D 4 HOH A 172 461 172 HOH HOH . D 4 HOH A 173 462 173 HOH HOH . D 4 HOH A 174 463 174 HOH HOH . D 4 HOH A 175 464 175 HOH HOH . D 4 HOH A 176 465 176 HOH HOH . D 4 HOH A 177 466 177 HOH HOH . D 4 HOH A 178 467 178 HOH HOH . D 4 HOH A 179 468 179 HOH HOH . D 4 HOH A 180 469 180 HOH HOH . D 4 HOH A 181 470 181 HOH HOH . D 4 HOH A 182 471 182 HOH HOH . D 4 HOH A 183 472 183 HOH HOH . D 4 HOH A 184 473 184 HOH HOH . D 4 HOH A 185 474 185 HOH HOH . D 4 HOH A 186 475 186 HOH HOH . D 4 HOH A 187 476 187 HOH HOH . D 4 HOH A 188 477 188 HOH HOH . D 4 HOH A 189 478 189 HOH HOH . D 4 HOH A 190 479 190 HOH HOH . D 4 HOH A 191 480 191 HOH HOH . D 4 HOH A 192 481 192 HOH HOH . D 4 HOH A 193 482 193 HOH HOH . D 4 HOH A 194 483 194 HOH HOH . D 4 HOH A 195 484 195 HOH HOH . D 4 HOH A 196 485 196 HOH HOH . D 4 HOH A 197 486 197 HOH HOH . D 4 HOH A 198 487 198 HOH HOH . D 4 HOH A 199 488 199 HOH HOH . D 4 HOH A 200 489 200 HOH HOH . D 4 HOH A 201 490 201 HOH HOH . D 4 HOH A 202 491 202 HOH HOH . D 4 HOH A 203 492 203 HOH HOH . D 4 HOH A 204 493 204 HOH HOH . D 4 HOH A 205 494 205 HOH HOH . D 4 HOH A 206 495 206 HOH HOH . D 4 HOH A 207 496 207 HOH HOH . D 4 HOH A 208 497 208 HOH HOH . D 4 HOH A 209 498 209 HOH HOH . D 4 HOH A 210 499 210 HOH HOH . D 4 HOH A 211 500 211 HOH HOH . D 4 HOH A 212 501 212 HOH HOH . D 4 HOH A 213 502 213 HOH HOH . D 4 HOH A 214 503 214 HOH HOH . D 4 HOH A 215 504 215 HOH HOH . D 4 HOH A 216 505 216 HOH HOH . D 4 HOH A 217 506 217 HOH HOH . D 4 HOH A 218 507 218 HOH HOH . D 4 HOH A 219 508 219 HOH HOH . D 4 HOH A 220 509 220 HOH HOH . D 4 HOH A 221 510 221 HOH HOH . D 4 HOH A 222 511 222 HOH HOH . D 4 HOH A 223 512 223 HOH HOH . D 4 HOH A 224 513 224 HOH HOH . D 4 HOH A 225 514 225 HOH HOH . D 4 HOH A 226 515 226 HOH HOH . D 4 HOH A 227 516 227 HOH HOH . D 4 HOH A 228 517 228 HOH HOH . D 4 HOH A 229 518 229 HOH HOH . D 4 HOH A 230 519 230 HOH HOH . D 4 HOH A 231 520 231 HOH HOH . D 4 HOH A 232 521 232 HOH HOH . D 4 HOH A 233 522 233 HOH HOH . D 4 HOH A 234 523 234 HOH HOH . D 4 HOH A 235 524 235 HOH HOH . D 4 HOH A 236 525 236 HOH HOH . D 4 HOH A 237 526 237 HOH HOH . D 4 HOH A 238 527 238 HOH HOH . D 4 HOH A 239 528 239 HOH HOH . D 4 HOH A 240 529 240 HOH HOH . D 4 HOH A 241 530 241 HOH HOH . D 4 HOH A 242 531 242 HOH HOH . D 4 HOH A 243 532 243 HOH HOH . D 4 HOH A 244 533 244 HOH HOH . D 4 HOH A 245 534 245 HOH HOH . D 4 HOH A 246 535 246 HOH HOH . D 4 HOH A 247 536 247 HOH HOH . D 4 HOH A 248 537 248 HOH HOH . D 4 HOH A 249 538 249 HOH HOH . D 4 HOH A 250 539 250 HOH HOH . D 4 HOH A 251 540 251 HOH HOH . D 4 HOH A 252 541 252 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N9 XAN . . . B 2 -29.31 -32.084 -4.102 1 24.41 ? N9 XAN 288 A 1 HETATM 2 C C4 XAN . . . B 2 -30.562 -32.25 -4.559 1 23.84 ? C4 XAN 288 A 1 HETATM 3 N N3 XAN . . . B 2 -31.772 -31.963 -4.044 1 23.34 ? N3 XAN 288 A 1 HETATM 4 C C2 XAN . . . B 2 -32.865 -32.298 -4.758 1 19.34 ? C2 XAN 288 A 1 HETATM 5 O O2 XAN . . . B 2 -33.976 -31.996 -4.209 1 24.28 ? O2 XAN 288 A 1 HETATM 6 N N1 XAN . . . B 2 -32.838 -32.883 -5.977 1 18.55 ? N1 XAN 288 A 1 HETATM 7 C C6 XAN . . . B 2 -31.678 -33.322 -6.563 1 19.39 ? C6 XAN 288 A 1 HETATM 8 O O6 XAN . . . B 2 -31.646 -33.845 -7.705 1 18.81 ? O6 XAN 288 A 1 HETATM 9 C C5 XAN . . . B 2 -30.443 -32.947 -5.851 1 21.91 ? C5 XAN 288 A 1 HETATM 10 N N7 XAN . . . B 2 -29.121 -33.101 -6.097 1 22.58 ? N7 XAN 288 A 1 HETATM 11 C C8 XAN . . . B 2 -28.454 -32.572 -5.028 1 23.57 ? C8 XAN 288 A 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #