data_3ODK # _model_server_result.job_id TgaGv9pCp-zSLtRqMvCPQg _model_server_result.datetime_utc '2024-11-25 09:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3odk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":165}' # _entry.id 3ODK # _exptl.entry_id 3ODK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 189.171 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-pyridin-2-yl-1H-pyrazole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ODK _cell.length_a 68.048 _cell.length_b 68.048 _cell.length_c 79.567 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ODK _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H7 N3 O2' _chem_comp.formula_weight 189.171 _chem_comp.id ODK _chem_comp.mon_nstd_flag . _chem_comp.name '3-pyridin-2-yl-1H-pyrazole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '5-Pyridin-2-yl-2H-pyrazole-3-carboxylic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C12 C7 ODK doub 237 n y C12 C14 ODK sing 238 n y C12 H12 ODK sing 239 n n C14 C13 ODK doub 240 n y C14 H14 ODK sing 241 n n C13 C11 ODK sing 242 n y C13 H13 ODK sing 243 n n N8 C11 ODK doub 244 n y C11 H11 ODK sing 245 n n C7 N8 ODK sing 246 n y C4 C7 ODK sing 247 n y N3 C4 ODK doub 248 n y C4 C2 ODK sing 249 n y C1 C2 ODK doub 250 n y C2 H2 ODK sing 251 n n N5 C1 ODK sing 252 n y C6 C1 ODK sing 253 n n O10 C6 ODK doub 254 n n C6 O9 ODK sing 255 n n O9 HO9 ODK sing 256 n n N5 N3 ODK sing 257 n y N5 HN5 ODK sing 258 n n # _atom_sites.entry_id 3ODK _atom_sites.fract_transf_matrix[1][1] 0.014695 _atom_sites.fract_transf_matrix[1][2] 0.008484 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016969 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012568 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PE4 A 1 164 1 PE4 PE4 . C 3 ODK A 1 165 1 ODK ODK . D 4 HOH A 1 166 166 HOH HOH . D 4 HOH A 2 167 1 HOH HOH . D 4 HOH A 3 168 168 HOH HOH . D 4 HOH A 4 169 2 HOH HOH . D 4 HOH A 5 170 5 HOH HOH . D 4 HOH A 6 171 171 HOH HOH . D 4 HOH A 7 172 6 HOH HOH . D 4 HOH A 8 173 7 HOH HOH . D 4 HOH A 9 174 8 HOH HOH . D 4 HOH A 10 175 9 HOH HOH . D 4 HOH A 11 176 10 HOH HOH . D 4 HOH A 12 177 177 HOH HOH . D 4 HOH A 13 178 178 HOH HOH . D 4 HOH A 14 179 13 HOH HOH . D 4 HOH A 15 180 14 HOH HOH . D 4 HOH A 16 181 16 HOH HOH . D 4 HOH A 17 182 17 HOH HOH . D 4 HOH A 18 183 183 HOH HOH . D 4 HOH A 19 184 184 HOH HOH . D 4 HOH A 20 185 185 HOH HOH . D 4 HOH A 21 186 186 HOH HOH . D 4 HOH A 22 187 18 HOH HOH . D 4 HOH A 23 188 188 HOH HOH . D 4 HOH A 24 189 21 HOH HOH . D 4 HOH A 25 190 23 HOH HOH . D 4 HOH A 26 191 191 HOH HOH . D 4 HOH A 27 192 192 HOH HOH . D 4 HOH A 28 193 193 HOH HOH . D 4 HOH A 29 194 24 HOH HOH . D 4 HOH A 30 195 195 HOH HOH . D 4 HOH A 31 196 25 HOH HOH . D 4 HOH A 32 197 197 HOH HOH . D 4 HOH A 33 198 198 HOH HOH . D 4 HOH A 34 199 199 HOH HOH . D 4 HOH A 35 200 200 HOH HOH . D 4 HOH A 36 201 26 HOH HOH . D 4 HOH A 37 202 36 HOH HOH . D 4 HOH A 38 203 37 HOH HOH . D 4 HOH A 39 204 38 HOH HOH . D 4 HOH A 40 205 39 HOH HOH . D 4 HOH A 41 206 40 HOH HOH . D 4 HOH A 42 207 42 HOH HOH . D 4 HOH A 43 208 49 HOH HOH . D 4 HOH A 44 209 55 HOH HOH . D 4 HOH A 45 210 57 HOH HOH . D 4 HOH A 46 211 61 HOH HOH . D 4 HOH A 47 212 62 HOH HOH . D 4 HOH A 48 213 63 HOH HOH . D 4 HOH A 49 214 66 HOH HOH . D 4 HOH A 50 215 69 HOH HOH . D 4 HOH A 51 216 73 HOH HOH . D 4 HOH A 52 217 74 HOH HOH . D 4 HOH A 53 218 85 HOH HOH . D 4 HOH A 54 219 88 HOH HOH . D 4 HOH A 55 220 92 HOH HOH . D 4 HOH A 56 221 99 HOH HOH . D 4 HOH A 57 222 105 HOH HOH . D 4 HOH A 58 223 106 HOH HOH . D 4 HOH A 59 224 107 HOH HOH . D 4 HOH A 60 225 110 HOH HOH . D 4 HOH A 61 226 111 HOH HOH . D 4 HOH A 62 227 113 HOH HOH . D 4 HOH A 63 228 119 HOH HOH . D 4 HOH A 64 229 125 HOH HOH . D 4 HOH A 65 230 128 HOH HOH . D 4 HOH A 66 231 148 HOH HOH . D 4 HOH A 67 232 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 ODK . . . C 3 39.182 -19.024 11.851 1 53.17 ? C12 ODK 165 A 1 HETATM 2 C C14 ODK . . . C 3 39.467 -20.19 12.536 1 53.48 ? C14 ODK 165 A 1 HETATM 3 C C13 ODK . . . C 3 39.835 -20.1 13.868 1 52.8 ? C13 ODK 165 A 1 HETATM 4 C C11 ODK . . . C 3 39.903 -18.85 14.476 1 54.42 ? C11 ODK 165 A 1 HETATM 5 N N8 ODK . . . C 3 39.614 -17.74 13.807 1 54.83 ? N8 ODK 165 A 1 HETATM 6 C C7 ODK . . . C 3 39.269 -17.799 12.505 1 53.67 ? C7 ODK 165 A 1 HETATM 7 C C4 ODK . . . C 3 38.952 -16.637 11.813 1 53.13 ? C4 ODK 165 A 1 HETATM 8 C C2 ODK . . . C 3 39.394 -15.393 12.035 1 53.18 ? C2 ODK 165 A 1 HETATM 9 C C1 ODK . . . C 3 38.75 -14.663 11.117 1 54.4 ? C1 ODK 165 A 1 HETATM 10 C C6 ODK . . . C 3 38.877 -13.152 10.883 1 55.1 ? C6 ODK 165 A 1 HETATM 11 O O10 ODK . . . C 3 38.79 -12.695 9.74 1 54.97 ? O10 ODK 165 A 1 HETATM 12 O O9 ODK . . . C 3 39.078 -12.384 11.827 1 56.41 ? O9 ODK 165 A 1 HETATM 13 N N5 ODK . . . C 3 37.957 -15.445 10.389 1 53.18 ? N5 ODK 165 A 1 HETATM 14 N N3 ODK . . . C 3 38.074 -16.604 10.807 1 51.77 ? N3 ODK 165 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #