data_3ODP # _model_server_result.job_id r99cYsztmKqzdSE4BKClsQ _model_server_result.datetime_utc '2025-07-01 23:51:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3odp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 3ODP # _exptl.entry_id 3ODP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3ODP _cell.length_a 89.364 _cell.length_b 89.364 _cell.length_c 120.012 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ODP _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 120.012 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 1 A GLY 0 1_555 A N MSE 2 A MSE 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 2 A MSE 1 1_555 A N LYS 3 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LEU 165 A LEU 164 1_555 A N MSE 166 A MSE 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 166 A MSE 165 1_555 A N PRO 167 A PRO 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale5 A C ALA 176 A ALA 175 1_555 A N MSE 177 A MSE 176 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C MSE 177 A MSE 176 1_555 A N THR 178 A THR 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale7 A C THR 183 A THR 182 1_555 A N MSE 184 A MSE 183 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 A C MSE 184 A MSE 183 1_555 A N LEU 185 A LEU 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 A C SER 208 A SER 207 1_555 A N MSE 209 A MSE 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 A C MSE 209 A MSE 208 1_555 A N GLN 210 A GLN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale11 A C LEU 221 A LEU 220 1_555 A N MSE 222 A MSE 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale12 A C MSE 222 A MSE 221 1_555 A N LYS 223 A LYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale13 A C GLN 357 A GLN 356 1_555 A N MSE 358 A MSE 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale14 A C MSE 358 A MSE 357 1_555 A N TYR 359 A TYR 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 A C SER 364 A SER 363 1_555 A N MSE 365 A MSE 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale16 A C MSE 365 A MSE 364 1_555 A N GLU 366 A GLU 365 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 237 n n O1 HO1 PG4 sing 238 n n C1 C2 PG4 sing 239 n n C1 H11 PG4 sing 240 n n C1 H12 PG4 sing 241 n n C2 O2 PG4 sing 242 n n C2 H21 PG4 sing 243 n n C2 H22 PG4 sing 244 n n O2 C3 PG4 sing 245 n n C3 C4 PG4 sing 246 n n C3 H31 PG4 sing 247 n n C3 H32 PG4 sing 248 n n C4 O3 PG4 sing 249 n n C4 H41 PG4 sing 250 n n C4 H42 PG4 sing 251 n n O3 C5 PG4 sing 252 n n C5 C6 PG4 sing 253 n n C5 H51 PG4 sing 254 n n C5 H52 PG4 sing 255 n n C6 O4 PG4 sing 256 n n C6 H61 PG4 sing 257 n n C6 H62 PG4 sing 258 n n O4 C7 PG4 sing 259 n n C7 C8 PG4 sing 260 n n C7 H71 PG4 sing 261 n n C7 H72 PG4 sing 262 n n C8 O5 PG4 sing 263 n n C8 H81 PG4 sing 264 n n C8 H82 PG4 sing 265 n n O5 HO5 PG4 sing 266 n n # _atom_sites.entry_id 3ODP _atom_sites.fract_transf_matrix[1][1] 0.01119 _atom_sites.fract_transf_matrix[1][2] 0.006461 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012921 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008332 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PG4 A 1 400 400 PG4 PG4 . C 2 PG4 A 1 401 401 PG4 PG4 . D 3 PO4 A 1 402 402 PO4 PO4 . E 4 HOH A 1 403 403 HOH HOH . E 4 HOH A 2 404 404 HOH HOH . E 4 HOH A 3 405 405 HOH HOH . E 4 HOH A 4 406 406 HOH HOH . E 4 HOH A 5 407 407 HOH HOH . E 4 HOH A 6 408 408 HOH HOH . E 4 HOH A 7 409 409 HOH HOH . E 4 HOH A 8 410 410 HOH HOH . E 4 HOH A 9 411 411 HOH HOH . E 4 HOH A 10 412 412 HOH HOH . E 4 HOH A 11 413 413 HOH HOH . E 4 HOH A 12 414 414 HOH HOH . E 4 HOH A 13 415 415 HOH HOH . E 4 HOH A 14 416 416 HOH HOH . E 4 HOH A 15 417 417 HOH HOH . E 4 HOH A 16 418 418 HOH HOH . E 4 HOH A 17 419 419 HOH HOH . E 4 HOH A 18 420 420 HOH HOH . E 4 HOH A 19 421 421 HOH HOH . E 4 HOH A 20 422 422 HOH HOH . E 4 HOH A 21 423 423 HOH HOH . E 4 HOH A 22 424 424 HOH HOH . E 4 HOH A 23 425 425 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . C 2 24.224 37.003 55.191 1 62.09 ? O1 PG4 401 A 1 HETATM 2 C C1 PG4 . . . C 2 25.602 36.611 55.024 1 62.87 ? C1 PG4 401 A 1 HETATM 3 C C2 PG4 . . . C 2 25.625 35.322 54.198 1 63.47 ? C2 PG4 401 A 1 HETATM 4 O O2 PG4 . . . C 2 26.659 34.436 54.586 1 62.44 ? O2 PG4 401 A 1 HETATM 5 C C3 PG4 . . . C 2 26.452 33.081 54.16 1 64.26 ? C3 PG4 401 A 1 HETATM 6 C C4 PG4 . . . C 2 26.983 32.811 52.755 1 64.67 ? C4 PG4 401 A 1 HETATM 7 O O3 PG4 . . . C 2 27.568 31.51 52.774 1 66.12 ? O3 PG4 401 A 1 HETATM 8 C C5 PG4 . . . C 2 28.957 31.44 52.402 1 66.97 ? C5 PG4 401 A 1 HETATM 9 C C6 PG4 . . . C 2 29.174 30.426 51.271 1 66.73 ? C6 PG4 401 A 1 HETATM 10 O O4 PG4 . . . C 2 29.217 29.104 51.8 1 66.98 ? O4 PG4 401 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 10 #