data_3ODR # _model_server_result.job_id l5WP6yk7tdLi50qw0-fOuw _model_server_result.datetime_utc '2025-02-05 16:56:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3odr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":396}' # _entry.id 3ODR # _exptl.entry_id 3ODR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 78.67 _cell.angle_beta 78.6 _cell.angle_gamma 73.26 _cell.entry_id 3ODR _cell.length_a 33.768 _cell.length_b 43.91 _cell.length_c 64.284 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ODR _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 3ODR _atom_sites.fract_transf_matrix[1][1] 0.029614 _atom_sites.fract_transf_matrix[1][2] -0.008908 _atom_sites.fract_transf_matrix[1][3] -0.0047 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023782 _atom_sites.fract_transf_matrix[2][3] -0.003576 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 396 1 EDO EDO . C 3 HOH A 1 397 1 HOH HOH . C 3 HOH A 2 398 2 HOH HOH . C 3 HOH A 3 399 3 HOH HOH . C 3 HOH A 4 400 4 HOH HOH . C 3 HOH A 5 401 5 HOH HOH . C 3 HOH A 6 402 6 HOH HOH . C 3 HOH A 7 403 7 HOH HOH . C 3 HOH A 8 404 8 HOH HOH . C 3 HOH A 9 405 9 HOH HOH . C 3 HOH A 10 406 10 HOH HOH . C 3 HOH A 11 407 11 HOH HOH . C 3 HOH A 12 408 12 HOH HOH . C 3 HOH A 13 409 13 HOH HOH . C 3 HOH A 14 410 14 HOH HOH . C 3 HOH A 15 411 15 HOH HOH . C 3 HOH A 16 412 16 HOH HOH . C 3 HOH A 17 413 17 HOH HOH . C 3 HOH A 18 414 18 HOH HOH . C 3 HOH A 19 415 19 HOH HOH . C 3 HOH A 20 416 20 HOH HOH . C 3 HOH A 21 417 21 HOH HOH . C 3 HOH A 22 418 22 HOH HOH . C 3 HOH A 23 419 23 HOH HOH . C 3 HOH A 24 420 24 HOH HOH . C 3 HOH A 25 421 25 HOH HOH . C 3 HOH A 26 422 26 HOH HOH . C 3 HOH A 27 423 27 HOH HOH . C 3 HOH A 28 424 28 HOH HOH . C 3 HOH A 29 425 29 HOH HOH . C 3 HOH A 30 426 30 HOH HOH . C 3 HOH A 31 427 32 HOH HOH . C 3 HOH A 32 428 33 HOH HOH . C 3 HOH A 33 429 34 HOH HOH . C 3 HOH A 34 430 35 HOH HOH . C 3 HOH A 35 431 36 HOH HOH . C 3 HOH A 36 432 37 HOH HOH . C 3 HOH A 37 433 38 HOH HOH . C 3 HOH A 38 434 39 HOH HOH . C 3 HOH A 39 435 40 HOH HOH . C 3 HOH A 40 436 41 HOH HOH . C 3 HOH A 41 437 42 HOH HOH . C 3 HOH A 42 438 43 HOH HOH . C 3 HOH A 43 439 44 HOH HOH . C 3 HOH A 44 440 45 HOH HOH . C 3 HOH A 45 441 46 HOH HOH . C 3 HOH A 46 442 47 HOH HOH . C 3 HOH A 47 443 49 HOH HOH . C 3 HOH A 48 444 50 HOH HOH . C 3 HOH A 49 445 51 HOH HOH . C 3 HOH A 50 446 52 HOH HOH . C 3 HOH A 51 447 53 HOH HOH . C 3 HOH A 52 448 54 HOH HOH . C 3 HOH A 53 449 55 HOH HOH . C 3 HOH A 54 450 56 HOH HOH . C 3 HOH A 55 451 57 HOH HOH . C 3 HOH A 56 452 58 HOH HOH . C 3 HOH A 57 453 59 HOH HOH . C 3 HOH A 58 454 60 HOH HOH . C 3 HOH A 59 455 61 HOH HOH . C 3 HOH A 60 456 62 HOH HOH . C 3 HOH A 61 457 63 HOH HOH . C 3 HOH A 62 458 64 HOH HOH . C 3 HOH A 63 459 65 HOH HOH . C 3 HOH A 64 460 66 HOH HOH . C 3 HOH A 65 461 67 HOH HOH . C 3 HOH A 66 462 68 HOH HOH . C 3 HOH A 67 463 69 HOH HOH . C 3 HOH A 68 464 70 HOH HOH . C 3 HOH A 69 465 71 HOH HOH . C 3 HOH A 70 466 72 HOH HOH . C 3 HOH A 71 467 73 HOH HOH . C 3 HOH A 72 468 74 HOH HOH . C 3 HOH A 73 469 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . B 2 0.718 -4.707 -0.765 1 43.02 ? C1 EDO 396 A 1 HETATM 2 O O1 EDO . . . B 2 0.003 -4.302 -1.93 1 45.63 ? O1 EDO 396 A 1 HETATM 3 C C2 EDO . . . B 2 1.786 -3.655 -0.521 1 39.49 ? C2 EDO 396 A 1 HETATM 4 O O2 EDO . . . B 2 1.118 -2.548 0.113 1 40.91 ? O2 EDO 396 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #