data_3ODU # _model_server_result.job_id FpRnUaPmYdcDSpwpLcAtWg _model_server_result.datetime_utc '2024-11-23 13:37:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3odu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1500}' # _entry.id 3ODU # _exptl.entry_id 3ODU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.651 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.17 _cell.angle_gamma 90 _cell.entry_id 3ODU _cell.length_a 64.54 _cell.length_b 83.692 _cell.length_c 119.995 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ODU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 28 1_555 A SG CYS 448 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 119 A CYS 109 1_555 A SG CYS 196 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 38 B CYS 28 1_555 B SG CYS 448 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 119 B CYS 109 1_555 B SG CYS 196 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C21 H34 N4 S2' _chem_comp.formula_weight 406.651 _chem_comp.id ITD _chem_comp.mon_nstd_flag . _chem_comp.name "(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ITD sing 173 n n N1 C2 ITD sing 174 n n N1 C4 ITD doub 175 n n S1 C5 ITD sing 176 n n C2 C6 ITD sing 177 n n N2 C7 ITD sing 178 n n S2 C9 ITD sing 179 n n C3 C2 ITD sing 180 n n N3 C10 ITD sing 181 n n C4 S1 ITD sing 182 n n C4 N2 ITD sing 183 n n N4 C9 ITD doub 184 n n C6 N2 ITD sing 185 n n C7 C5 ITD doub 186 n n C7 C8 ITD sing 187 n n C8 S2 ITD sing 188 n n C9 N3 ITD sing 189 n n C10 C11 ITD sing 190 n n C11 C12 ITD sing 191 n n C13 C12 ITD sing 192 n n C14 C13 ITD sing 193 n n C15 C10 ITD sing 194 n n C15 C14 ITD sing 195 n n C16 N4 ITD sing 196 n n C17 C16 ITD sing 197 n n C18 C17 ITD sing 198 n n C19 C18 ITD sing 199 n n C19 C20 ITD sing 200 n n C20 C21 ITD sing 201 n n C21 C16 ITD sing 202 n n C1 H1 ITD sing 203 n n C1 H1A ITD sing 204 n n C1 H1B ITD sing 205 n n C3 H3 ITD sing 206 n n C3 H3A ITD sing 207 n n C3 H3B ITD sing 208 n n N3 HN3 ITD sing 209 n n C5 H5 ITD sing 210 n n C6 H6 ITD sing 211 n n C6 H6A ITD sing 212 n n C8 H8 ITD sing 213 n n C8 H8A ITD sing 214 n n C10 H10 ITD sing 215 n n C11 H11 ITD sing 216 n n C11 H11A ITD sing 217 n n C12 H12 ITD sing 218 n n C12 H12A ITD sing 219 n n C13 H13 ITD sing 220 n n C13 H13A ITD sing 221 n n C14 H14 ITD sing 222 n n C14 H14A ITD sing 223 n n C15 H15 ITD sing 224 n n C15 H15A ITD sing 225 n n C16 H16 ITD sing 226 n n C17 H17 ITD sing 227 n n C17 H17A ITD sing 228 n n C18 H18 ITD sing 229 n n C18 H18A ITD sing 230 n n C19 H19 ITD sing 231 n n C19 H19A ITD sing 232 n n C20 H20 ITD sing 233 n n C20 H20A ITD sing 234 n n C21 H21 ITD sing 235 n n C21 H21A ITD sing 236 n n # _atom_sites.entry_id 3ODU _atom_sites.fract_transf_matrix[1][1] 0.015494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ITD A 1 1500 1500 ITD ITD . D 3 OLC A 1 1600 1600 OLC OLC . E 3 OLC A 1 1603 1603 OLC OLC . F 3 OLC A 1 1604 1604 OLC OLC . G 4 OLA A 1 1610 1610 OLA OLA . H 2 ITD B 1 1500 1500 ITD ITD . I 3 OLC B 1 1601 1601 OLC OLC . J 3 OLC B 1 1602 1602 OLC OLC . K 4 OLA B 1 1605 1605 OLA OLA . L 4 OLA B 1 1606 1606 OLA OLA . M 4 OLA B 1 1607 1607 OLA OLA . N 4 OLA B 1 1608 1608 OLA OLA . O 4 OLA B 1 1609 1609 OLA OLA . P 5 HOH A 1 1612 1612 HOH HOH . P 5 HOH A 2 1613 1613 HOH HOH . P 5 HOH A 3 1614 1614 HOH HOH . P 5 HOH A 4 1615 1615 HOH HOH . P 5 HOH A 5 1622 1622 HOH HOH . P 5 HOH A 6 1625 1625 HOH HOH . P 5 HOH A 7 1626 1626 HOH HOH . P 5 HOH A 8 1628 1628 HOH HOH . P 5 HOH A 9 1629 1629 HOH HOH . P 5 HOH A 10 1630 1630 HOH HOH . P 5 HOH A 11 1631 1631 HOH HOH . P 5 HOH A 12 1632 1632 HOH HOH . P 5 HOH A 13 1633 1633 HOH HOH . P 5 HOH A 14 1638 1638 HOH HOH . P 5 HOH A 15 1639 1639 HOH HOH . P 5 HOH A 16 1640 1640 HOH HOH . P 5 HOH A 17 1644 1644 HOH HOH . P 5 HOH A 18 1645 1645 HOH HOH . P 5 HOH A 19 1650 1650 HOH HOH . P 5 HOH A 20 1651 1651 HOH HOH . P 5 HOH A 21 1653 1653 HOH HOH . P 5 HOH A 22 1654 1654 HOH HOH . P 5 HOH A 23 1655 1655 HOH HOH . P 5 HOH A 24 1656 1656 HOH HOH . P 5 HOH A 25 1664 1664 HOH HOH . P 5 HOH A 26 1668 1668 HOH HOH . P 5 HOH A 27 1669 1669 HOH HOH . P 5 HOH A 28 1670 1670 HOH HOH . P 5 HOH A 29 1671 1671 HOH HOH . P 5 HOH A 30 1672 1672 HOH HOH . P 5 HOH A 31 1674 1674 HOH HOH . P 5 HOH A 32 1675 1675 HOH HOH . P 5 HOH A 33 1676 1676 HOH HOH . P 5 HOH A 34 1677 1677 HOH HOH . P 5 HOH A 35 1679 1679 HOH HOH . P 5 HOH A 36 1680 1680 HOH HOH . P 5 HOH A 37 1681 1681 HOH HOH . P 5 HOH A 38 1682 1682 HOH HOH . P 5 HOH A 39 1693 1693 HOH HOH . P 5 HOH A 40 1694 1694 HOH HOH . P 5 HOH A 41 1695 1695 HOH HOH . P 5 HOH A 42 1701 1701 HOH HOH . P 5 HOH A 43 1704 1704 HOH HOH . P 5 HOH A 44 1705 1705 HOH HOH . P 5 HOH A 45 1710 1710 HOH HOH . P 5 HOH A 46 1712 1712 HOH HOH . P 5 HOH A 47 1713 1713 HOH HOH . P 5 HOH A 48 1715 1715 HOH HOH . P 5 HOH A 49 1716 1716 HOH HOH . P 5 HOH A 50 1717 1717 HOH HOH . P 5 HOH A 51 1718 1718 HOH HOH . P 5 HOH A 52 1719 1719 HOH HOH . P 5 HOH A 53 1720 1720 HOH HOH . P 5 HOH A 54 1723 1723 HOH HOH . P 5 HOH A 55 1725 1725 HOH HOH . P 5 HOH A 56 1727 1727 HOH HOH . P 5 HOH A 57 1729 1729 HOH HOH . P 5 HOH A 58 1734 1734 HOH HOH . P 5 HOH A 59 1735 1735 HOH HOH . P 5 HOH A 60 1736 1736 HOH HOH . P 5 HOH A 61 1739 1739 HOH HOH . P 5 HOH A 62 1742 1742 HOH HOH . P 5 HOH A 63 1743 1743 HOH HOH . P 5 HOH A 64 1744 1744 HOH HOH . P 5 HOH A 65 1747 1747 HOH HOH . P 5 HOH A 66 1748 1748 HOH HOH . P 5 HOH A 67 1749 1749 HOH HOH . P 5 HOH A 68 1752 1752 HOH HOH . P 5 HOH A 69 1753 1753 HOH HOH . P 5 HOH A 70 1754 1754 HOH HOH . P 5 HOH A 71 1755 1755 HOH HOH . P 5 HOH A 72 1756 1756 HOH HOH . P 5 HOH A 73 1758 1758 HOH HOH . Q 5 HOH B 1 1611 1611 HOH HOH . Q 5 HOH B 2 1616 1616 HOH HOH . Q 5 HOH B 3 1617 1617 HOH HOH . Q 5 HOH B 4 1618 1618 HOH HOH . Q 5 HOH B 5 1619 1619 HOH HOH . Q 5 HOH B 6 1620 1620 HOH HOH . Q 5 HOH B 7 1621 1621 HOH HOH . Q 5 HOH B 8 1623 1623 HOH HOH . Q 5 HOH B 9 1624 1624 HOH HOH . Q 5 HOH B 10 1627 1627 HOH HOH . Q 5 HOH B 11 1634 1634 HOH HOH . Q 5 HOH B 12 1635 1635 HOH HOH . Q 5 HOH B 13 1636 1636 HOH HOH . Q 5 HOH B 14 1637 1637 HOH HOH . Q 5 HOH B 15 1641 1641 HOH HOH . Q 5 HOH B 16 1642 1642 HOH HOH . Q 5 HOH B 17 1643 1643 HOH HOH . Q 5 HOH B 18 1646 1646 HOH HOH . Q 5 HOH B 19 1648 1648 HOH HOH . Q 5 HOH B 20 1649 1649 HOH HOH . Q 5 HOH B 21 1652 1652 HOH HOH . Q 5 HOH B 22 1657 1657 HOH HOH . Q 5 HOH B 23 1658 1658 HOH HOH . Q 5 HOH B 24 1659 1659 HOH HOH . Q 5 HOH B 25 1660 1660 HOH HOH . Q 5 HOH B 26 1661 1661 HOH HOH . Q 5 HOH B 27 1662 1662 HOH HOH . Q 5 HOH B 28 1663 1663 HOH HOH . Q 5 HOH B 29 1665 1665 HOH HOH . Q 5 HOH B 30 1666 1666 HOH HOH . Q 5 HOH B 31 1667 1667 HOH HOH . Q 5 HOH B 32 1673 1673 HOH HOH . Q 5 HOH B 33 1683 1683 HOH HOH . Q 5 HOH B 34 1684 1684 HOH HOH . Q 5 HOH B 35 1685 1685 HOH HOH . Q 5 HOH B 36 1686 1686 HOH HOH . Q 5 HOH B 37 1687 1687 HOH HOH . Q 5 HOH B 38 1688 1688 HOH HOH . Q 5 HOH B 39 1689 1689 HOH HOH . Q 5 HOH B 40 1690 1690 HOH HOH . Q 5 HOH B 41 1691 1691 HOH HOH . Q 5 HOH B 42 1692 1692 HOH HOH . Q 5 HOH B 43 1696 1696 HOH HOH . Q 5 HOH B 44 1697 1697 HOH HOH . Q 5 HOH B 45 1698 1698 HOH HOH . Q 5 HOH B 46 1699 1699 HOH HOH . Q 5 HOH B 47 1700 1700 HOH HOH . Q 5 HOH B 48 1702 1702 HOH HOH . Q 5 HOH B 49 1703 1703 HOH HOH . Q 5 HOH B 50 1706 1706 HOH HOH . Q 5 HOH B 51 1707 1707 HOH HOH . Q 5 HOH B 52 1708 1708 HOH HOH . Q 5 HOH B 53 1711 1711 HOH HOH . Q 5 HOH B 54 1721 1721 HOH HOH . Q 5 HOH B 55 1722 1722 HOH HOH . Q 5 HOH B 56 1724 1724 HOH HOH . Q 5 HOH B 57 1726 1726 HOH HOH . Q 5 HOH B 58 1728 1728 HOH HOH . Q 5 HOH B 59 1730 1730 HOH HOH . Q 5 HOH B 60 1731 1731 HOH HOH . Q 5 HOH B 61 1737 1737 HOH HOH . Q 5 HOH B 62 1738 1738 HOH HOH . Q 5 HOH B 63 1740 1740 HOH HOH . Q 5 HOH B 64 1741 1741 HOH HOH . Q 5 HOH B 65 1745 1745 HOH HOH . Q 5 HOH B 66 1746 1746 HOH HOH . Q 5 HOH B 67 1750 1750 HOH HOH . Q 5 HOH B 68 1751 1751 HOH HOH . Q 5 HOH B 69 1757 1757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ITD . . . H 2 -9.112 13.063 67.333 1 25.11 ? C1 ITD 1500 B 1 HETATM 2 N N1 ITD . . . H 2 -10.811 14.738 67.816 1 59.87 ? N1 ITD 1500 B 1 HETATM 3 S S1 ITD . . . H 2 -11.888 16.499 69.696 1 52.45 ? S1 ITD 1500 B 1 HETATM 4 C C2 ITD . . . H 2 -10.533 13.305 67.814 1 46.03 ? C2 ITD 1500 B 1 HETATM 5 N N2 ITD . . . H 2 -11.196 14.05 69.862 1 52.82 ? N2 ITD 1500 B 1 HETATM 6 S S2 ITD . . . H 2 -13.354 12.663 72.337 1 51.31 ? S2 ITD 1500 B 1 HETATM 7 C C3 ITD . . . H 2 -11.571 12.598 66.954 1 16.42 ? C3 ITD 1500 B 1 HETATM 8 N N3 ITD . . . H 2 -13.831 14.662 73.847 1 42.68 ? N3 ITD 1500 B 1 HETATM 9 C C4 ITD . . . H 2 -11.174 15.082 69.058 1 53.6 ? C4 ITD 1500 B 1 HETATM 10 N N4 ITD . . . H 2 -15.53 14.155 72.312 1 35.84 ? N4 ITD 1500 B 1 HETATM 11 C C5 ITD . . . H 2 -12.075 15.69 71.231 1 59.03 ? C5 ITD 1500 B 1 HETATM 12 C C6 ITD . . . H 2 -10.68 12.833 69.267 1 54.96 ? C6 ITD 1500 B 1 HETATM 13 C C7 ITD . . . H 2 -11.65 14.345 71.105 1 57.01 ? C7 ITD 1500 B 1 HETATM 14 C C8 ITD . . . H 2 -11.714 13.312 72.21 1 55.54 ? C8 ITD 1500 B 1 HETATM 15 C C9 ITD . . . H 2 -14.328 13.919 72.851 1 114.42 ? C9 ITD 1500 B 1 HETATM 16 C C10 ITD . . . H 2 -14.375 15.836 74.514 1 30.42 ? C10 ITD 1500 B 1 HETATM 17 C C11 ITD . . . H 2 -15.253 15.526 75.723 1 26.42 ? C11 ITD 1500 B 1 HETATM 18 C C12 ITD . . . H 2 -15.495 16.816 76.507 1 25.63 ? C12 ITD 1500 B 1 HETATM 19 C C13 ITD . . . H 2 -16.166 17.874 75.631 1 34.54 ? C13 ITD 1500 B 1 HETATM 20 C C14 ITD . . . H 2 -15.383 18.155 74.349 1 27.07 ? C14 ITD 1500 B 1 HETATM 21 C C15 ITD . . . H 2 -14.993 16.886 73.592 1 34.27 ? C15 ITD 1500 B 1 HETATM 22 C C16 ITD . . . H 2 -15.938 13.98 70.92 1 38.43 ? C16 ITD 1500 B 1 HETATM 23 C C17 ITD . . . H 2 -14.854 14.186 69.863 1 24.29 ? C17 ITD 1500 B 1 HETATM 24 C C18 ITD . . . H 2 -15.428 14.078 68.45 1 50.92 ? C18 ITD 1500 B 1 HETATM 25 C C19 ITD . . . H 2 -16.189 12.769 68.236 1 35.19 ? C19 ITD 1500 B 1 HETATM 26 C C20 ITD . . . H 2 -17.294 12.596 69.275 1 28.81 ? C20 ITD 1500 B 1 HETATM 27 C C21 ITD . . . H 2 -16.749 12.703 70.7 1 15.67 ? C21 ITD 1500 B 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #