data_3ODU
#
_model_server_result.job_id            O9nPbhRo-lHzR56C1zLwzg 
_model_server_result.datetime_utc      '2024-11-23 13:15:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3odu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1600}' 
#
_entry.id    3ODU 
#
_exptl.entry_id    3ODU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              356.54 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.17 
_cell.angle_gamma         90 
_cell.entry_id            3ODU 
_cell.length_a            64.54 
_cell.length_b            83.692 
_cell.length_c            119.995 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3ODU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 38 A CYS 28 1_555 A SG CYS 448 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf2 A SG CYS 119 A CYS 109 1_555 A SG CYS 196 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? 
disulf ? disulf3 B SG CYS 38 B CYS 28 1_555 B SG CYS 448 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
disulf ? disulf4 B SG CYS 119 B CYS 109 1_555 B SG CYS 196 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
#
_chem_comp.formula           'C21 H40 O4' 
_chem_comp.formula_weight    356.54 
_chem_comp.id                OLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     1-Oleoyl-R-glycerol 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C18 C17 OLC sing 354 n n 
C10 C9 OLC doub 355 n n 
C10 C11 OLC sing 356 n n 
C9 C8 OLC sing 357 n n 
C17 C16 OLC sing 358 z n 
C11 C12 OLC sing 359 n n 
C8 C7 OLC sing 360 n n 
C24 C22 OLC sing 361 n n 
C24 O25 OLC sing 362 n n 
C16 C15 OLC sing 363 n n 
C12 C13 OLC sing 364 n n 
C7 C6 OLC sing 365 n n 
C15 C14 OLC sing 366 n n 
C13 C14 OLC sing 367 n n 
C6 C5 OLC sing 368 n n 
C5 C4 OLC sing 369 n n 
C4 C3 OLC sing 370 n n 
C3 C2 OLC sing 371 n n 
C2 C1 OLC sing 372 n n 
C21 C22 OLC sing 373 n n 
C21 O20 OLC sing 374 n n 
C1 O19 OLC doub 375 n n 
C1 O20 OLC sing 376 n n 
C22 O23 OLC sing 377 n n 
C18 H18 OLC sing 378 n n 
C18 H18A OLC sing 379 n n 
C18 H18B OLC sing 380 n n 
C10 H10 OLC sing 381 n n 
C9 H9 OLC sing 382 n n 
C17 H17 OLC sing 383 n n 
C17 H17A OLC sing 384 n n 
C11 H11 OLC sing 385 n n 
C11 H11A OLC sing 386 n n 
C8 H8 OLC sing 387 n n 
C8 H8A OLC sing 388 n n 
C24 H24 OLC sing 389 n n 
C24 H24A OLC sing 390 n n 
C16 H16 OLC sing 391 n n 
C16 H16A OLC sing 392 n n 
C12 H12 OLC sing 393 n n 
C12 H12A OLC sing 394 n n 
C7 H7 OLC sing 395 n n 
C7 H7A OLC sing 396 n n 
C15 H15 OLC sing 397 n n 
C15 H15A OLC sing 398 n n 
C13 H13 OLC sing 399 n n 
C13 H13A OLC sing 400 n n 
C6 H6 OLC sing 401 n n 
C6 H6A OLC sing 402 n n 
C14 H14 OLC sing 403 n n 
C14 H14A OLC sing 404 n n 
C5 H5 OLC sing 405 n n 
C5 H5A OLC sing 406 n n 
C4 H4 OLC sing 407 n n 
C4 H4A OLC sing 408 n n 
C3 H3 OLC sing 409 n n 
C3 H3A OLC sing 410 n n 
C2 H2 OLC sing 411 n n 
C2 H2A OLC sing 412 n n 
C21 H21 OLC sing 413 n n 
C21 H21A OLC sing 414 n n 
C22 H22 OLC sing 415 n n 
O25 HO25 OLC sing 416 n n 
O23 HO23 OLC sing 417 n n 
#
_atom_sites.entry_id                     3ODU 
_atom_sites.fract_transf_matrix[1][1]    0.015494 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003341 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008525 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ITD A 1 1500 1500 ITD ITD . 
D 3 OLC A 1 1600 1600 OLC OLC . 
E 3 OLC A 1 1603 1603 OLC OLC . 
F 3 OLC A 1 1604 1604 OLC OLC . 
G 4 OLA A 1 1610 1610 OLA OLA . 
H 2 ITD B 1 1500 1500 ITD ITD . 
I 3 OLC B 1 1601 1601 OLC OLC . 
J 3 OLC B 1 1602 1602 OLC OLC . 
K 4 OLA B 1 1605 1605 OLA OLA . 
L 4 OLA B 1 1606 1606 OLA OLA . 
M 4 OLA B 1 1607 1607 OLA OLA . 
N 4 OLA B 1 1608 1608 OLA OLA . 
O 4 OLA B 1 1609 1609 OLA OLA . 
P 5 HOH A 1 1612 1612 HOH HOH . 
P 5 HOH A 2 1613 1613 HOH HOH . 
P 5 HOH A 3 1614 1614 HOH HOH . 
P 5 HOH A 4 1615 1615 HOH HOH . 
P 5 HOH A 5 1622 1622 HOH HOH . 
P 5 HOH A 6 1625 1625 HOH HOH . 
P 5 HOH A 7 1626 1626 HOH HOH . 
P 5 HOH A 8 1628 1628 HOH HOH . 
P 5 HOH A 9 1629 1629 HOH HOH . 
P 5 HOH A 10 1630 1630 HOH HOH . 
P 5 HOH A 11 1631 1631 HOH HOH . 
P 5 HOH A 12 1632 1632 HOH HOH . 
P 5 HOH A 13 1633 1633 HOH HOH . 
P 5 HOH A 14 1638 1638 HOH HOH . 
P 5 HOH A 15 1639 1639 HOH HOH . 
P 5 HOH A 16 1640 1640 HOH HOH . 
P 5 HOH A 17 1644 1644 HOH HOH . 
P 5 HOH A 18 1645 1645 HOH HOH . 
P 5 HOH A 19 1650 1650 HOH HOH . 
P 5 HOH A 20 1651 1651 HOH HOH . 
P 5 HOH A 21 1653 1653 HOH HOH . 
P 5 HOH A 22 1654 1654 HOH HOH . 
P 5 HOH A 23 1655 1655 HOH HOH . 
P 5 HOH A 24 1656 1656 HOH HOH . 
P 5 HOH A 25 1664 1664 HOH HOH . 
P 5 HOH A 26 1668 1668 HOH HOH . 
P 5 HOH A 27 1669 1669 HOH HOH . 
P 5 HOH A 28 1670 1670 HOH HOH . 
P 5 HOH A 29 1671 1671 HOH HOH . 
P 5 HOH A 30 1672 1672 HOH HOH . 
P 5 HOH A 31 1674 1674 HOH HOH . 
P 5 HOH A 32 1675 1675 HOH HOH . 
P 5 HOH A 33 1676 1676 HOH HOH . 
P 5 HOH A 34 1677 1677 HOH HOH . 
P 5 HOH A 35 1679 1679 HOH HOH . 
P 5 HOH A 36 1680 1680 HOH HOH . 
P 5 HOH A 37 1681 1681 HOH HOH . 
P 5 HOH A 38 1682 1682 HOH HOH . 
P 5 HOH A 39 1693 1693 HOH HOH . 
P 5 HOH A 40 1694 1694 HOH HOH . 
P 5 HOH A 41 1695 1695 HOH HOH . 
P 5 HOH A 42 1701 1701 HOH HOH . 
P 5 HOH A 43 1704 1704 HOH HOH . 
P 5 HOH A 44 1705 1705 HOH HOH . 
P 5 HOH A 45 1710 1710 HOH HOH . 
P 5 HOH A 46 1712 1712 HOH HOH . 
P 5 HOH A 47 1713 1713 HOH HOH . 
P 5 HOH A 48 1715 1715 HOH HOH . 
P 5 HOH A 49 1716 1716 HOH HOH . 
P 5 HOH A 50 1717 1717 HOH HOH . 
P 5 HOH A 51 1718 1718 HOH HOH . 
P 5 HOH A 52 1719 1719 HOH HOH . 
P 5 HOH A 53 1720 1720 HOH HOH . 
P 5 HOH A 54 1723 1723 HOH HOH . 
P 5 HOH A 55 1725 1725 HOH HOH . 
P 5 HOH A 56 1727 1727 HOH HOH . 
P 5 HOH A 57 1729 1729 HOH HOH . 
P 5 HOH A 58 1734 1734 HOH HOH . 
P 5 HOH A 59 1735 1735 HOH HOH . 
P 5 HOH A 60 1736 1736 HOH HOH . 
P 5 HOH A 61 1739 1739 HOH HOH . 
P 5 HOH A 62 1742 1742 HOH HOH . 
P 5 HOH A 63 1743 1743 HOH HOH . 
P 5 HOH A 64 1744 1744 HOH HOH . 
P 5 HOH A 65 1747 1747 HOH HOH . 
P 5 HOH A 66 1748 1748 HOH HOH . 
P 5 HOH A 67 1749 1749 HOH HOH . 
P 5 HOH A 68 1752 1752 HOH HOH . 
P 5 HOH A 69 1753 1753 HOH HOH . 
P 5 HOH A 70 1754 1754 HOH HOH . 
P 5 HOH A 71 1755 1755 HOH HOH . 
P 5 HOH A 72 1756 1756 HOH HOH . 
P 5 HOH A 73 1758 1758 HOH HOH . 
Q 5 HOH B 1 1611 1611 HOH HOH . 
Q 5 HOH B 2 1616 1616 HOH HOH . 
Q 5 HOH B 3 1617 1617 HOH HOH . 
Q 5 HOH B 4 1618 1618 HOH HOH . 
Q 5 HOH B 5 1619 1619 HOH HOH . 
Q 5 HOH B 6 1620 1620 HOH HOH . 
Q 5 HOH B 7 1621 1621 HOH HOH . 
Q 5 HOH B 8 1623 1623 HOH HOH . 
Q 5 HOH B 9 1624 1624 HOH HOH . 
Q 5 HOH B 10 1627 1627 HOH HOH . 
Q 5 HOH B 11 1634 1634 HOH HOH . 
Q 5 HOH B 12 1635 1635 HOH HOH . 
Q 5 HOH B 13 1636 1636 HOH HOH . 
Q 5 HOH B 14 1637 1637 HOH HOH . 
Q 5 HOH B 15 1641 1641 HOH HOH . 
Q 5 HOH B 16 1642 1642 HOH HOH . 
Q 5 HOH B 17 1643 1643 HOH HOH . 
Q 5 HOH B 18 1646 1646 HOH HOH . 
Q 5 HOH B 19 1648 1648 HOH HOH . 
Q 5 HOH B 20 1649 1649 HOH HOH . 
Q 5 HOH B 21 1652 1652 HOH HOH . 
Q 5 HOH B 22 1657 1657 HOH HOH . 
Q 5 HOH B 23 1658 1658 HOH HOH . 
Q 5 HOH B 24 1659 1659 HOH HOH . 
Q 5 HOH B 25 1660 1660 HOH HOH . 
Q 5 HOH B 26 1661 1661 HOH HOH . 
Q 5 HOH B 27 1662 1662 HOH HOH . 
Q 5 HOH B 28 1663 1663 HOH HOH . 
Q 5 HOH B 29 1665 1665 HOH HOH . 
Q 5 HOH B 30 1666 1666 HOH HOH . 
Q 5 HOH B 31 1667 1667 HOH HOH . 
Q 5 HOH B 32 1673 1673 HOH HOH . 
Q 5 HOH B 33 1683 1683 HOH HOH . 
Q 5 HOH B 34 1684 1684 HOH HOH . 
Q 5 HOH B 35 1685 1685 HOH HOH . 
Q 5 HOH B 36 1686 1686 HOH HOH . 
Q 5 HOH B 37 1687 1687 HOH HOH . 
Q 5 HOH B 38 1688 1688 HOH HOH . 
Q 5 HOH B 39 1689 1689 HOH HOH . 
Q 5 HOH B 40 1690 1690 HOH HOH . 
Q 5 HOH B 41 1691 1691 HOH HOH . 
Q 5 HOH B 42 1692 1692 HOH HOH . 
Q 5 HOH B 43 1696 1696 HOH HOH . 
Q 5 HOH B 44 1697 1697 HOH HOH . 
Q 5 HOH B 45 1698 1698 HOH HOH . 
Q 5 HOH B 46 1699 1699 HOH HOH . 
Q 5 HOH B 47 1700 1700 HOH HOH . 
Q 5 HOH B 48 1702 1702 HOH HOH . 
Q 5 HOH B 49 1703 1703 HOH HOH . 
Q 5 HOH B 50 1706 1706 HOH HOH . 
Q 5 HOH B 51 1707 1707 HOH HOH . 
Q 5 HOH B 52 1708 1708 HOH HOH . 
Q 5 HOH B 53 1711 1711 HOH HOH . 
Q 5 HOH B 54 1721 1721 HOH HOH . 
Q 5 HOH B 55 1722 1722 HOH HOH . 
Q 5 HOH B 56 1724 1724 HOH HOH . 
Q 5 HOH B 57 1726 1726 HOH HOH . 
Q 5 HOH B 58 1728 1728 HOH HOH . 
Q 5 HOH B 59 1730 1730 HOH HOH . 
Q 5 HOH B 60 1731 1731 HOH HOH . 
Q 5 HOH B 61 1737 1737 HOH HOH . 
Q 5 HOH B 62 1738 1738 HOH HOH . 
Q 5 HOH B 63 1740 1740 HOH HOH . 
Q 5 HOH B 64 1741 1741 HOH HOH . 
Q 5 HOH B 65 1745 1745 HOH HOH . 
Q 5 HOH B 66 1746 1746 HOH HOH . 
Q 5 HOH B 67 1750 1750 HOH HOH . 
Q 5 HOH B 68 1751 1751 HOH HOH . 
Q 5 HOH B 69 1757 1757 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 OLC . . . D 3 37.08 -4.797 63.675 1 50.57 ? C10 OLC 1600 A 1 
HETATM 2 C C9 OLC . . . D 3 36.845 -4.793 62.362 1 72.19 ? C9 OLC 1600 A 1 
HETATM 3 C C11 OLC . . . D 3 36.882 -3.558 64.521 1 49.14 ? C11 OLC 1600 A 1 
HETATM 4 C C8 OLC . . . D 3 36.372 -3.551 61.64 1 89.87 ? C8 OLC 1600 A 1 
HETATM 5 C C24 OLC . . . D 3 37.479 -2.016 70.028 1 80.89 ? C24 OLC 1600 A 1 
HETATM 6 C C7 OLC . . . D 3 37.568 -2.656 61.331 1 115.37 ? C7 OLC 1600 A 1 
HETATM 7 C C6 OLC . . . D 3 37.136 -1.214 61.083 1 60.17 ? C6 OLC 1600 A 1 
HETATM 8 C C5 OLC . . . D 3 37.544 -0.31 62.242 1 79.4 ? C5 OLC 1600 A 1 
HETATM 9 C C4 OLC . . . D 3 36.345 0.043 63.116 1 43.92 ? C4 OLC 1600 A 1 
HETATM 10 C C3 OLC . . . D 3 36.787 0.738 64.4 1 62.15 ? C3 OLC 1600 A 1 
HETATM 11 C C2 OLC . . . D 3 36.819 -0.22 65.59 1 58.12 ? C2 OLC 1600 A 1 
HETATM 12 C C21 OLC . . . D 3 36.515 0.229 69.287 1 46.84 ? C21 OLC 1600 A 1 
HETATM 13 C C1 OLC . . . D 3 36.456 0.504 66.871 1 49.09 ? C1 OLC 1600 A 1 
HETATM 14 C C22 OLC . . . D 3 37.165 -0.574 70.415 1 112.06 ? C22 OLC 1600 A 1 
HETATM 15 O O19 OLC . . . D 3 35.9 1.594 66.896 1 51.99 ? O19 OLC 1600 A 1 
HETATM 16 O O25 OLC . . . D 3 38.086 -2.68 71.145 1 48.27 ? O25 OLC 1600 A 1 
HETATM 17 O O23 OLC . . . D 3 38.341 0.092 70.89 1 49.29 ? O23 OLC 1600 A 1 
HETATM 18 O O20 OLC . . . D 3 36.842 -0.231 67.97 1 79.01 ? O20 OLC 1600 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           18 
#