data_3ODU # _model_server_result.job_id n084GI_QPmBD6-aLie87kQ _model_server_result.datetime_utc '2024-11-23 13:44:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3odu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1602}' # _entry.id 3ODU # _exptl.entry_id 3ODU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 102.17 _cell.angle_gamma 90 _cell.entry_id 3ODU _cell.length_a 64.54 _cell.length_b 83.692 _cell.length_c 119.995 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3ODU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 I N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 28 1_555 A SG CYS 448 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 119 A CYS 109 1_555 A SG CYS 196 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf3 B SG CYS 38 B CYS 28 1_555 B SG CYS 448 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? disulf ? disulf4 B SG CYS 119 B CYS 109 1_555 B SG CYS 196 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 354 n n C10 C9 OLC doub 355 n n C10 C11 OLC sing 356 n n C9 C8 OLC sing 357 n n C17 C16 OLC sing 358 z n C11 C12 OLC sing 359 n n C8 C7 OLC sing 360 n n C24 C22 OLC sing 361 n n C24 O25 OLC sing 362 n n C16 C15 OLC sing 363 n n C12 C13 OLC sing 364 n n C7 C6 OLC sing 365 n n C15 C14 OLC sing 366 n n C13 C14 OLC sing 367 n n C6 C5 OLC sing 368 n n C5 C4 OLC sing 369 n n C4 C3 OLC sing 370 n n C3 C2 OLC sing 371 n n C2 C1 OLC sing 372 n n C21 C22 OLC sing 373 n n C21 O20 OLC sing 374 n n C1 O19 OLC doub 375 n n C1 O20 OLC sing 376 n n C22 O23 OLC sing 377 n n C18 H18 OLC sing 378 n n C18 H18A OLC sing 379 n n C18 H18B OLC sing 380 n n C10 H10 OLC sing 381 n n C9 H9 OLC sing 382 n n C17 H17 OLC sing 383 n n C17 H17A OLC sing 384 n n C11 H11 OLC sing 385 n n C11 H11A OLC sing 386 n n C8 H8 OLC sing 387 n n C8 H8A OLC sing 388 n n C24 H24 OLC sing 389 n n C24 H24A OLC sing 390 n n C16 H16 OLC sing 391 n n C16 H16A OLC sing 392 n n C12 H12 OLC sing 393 n n C12 H12A OLC sing 394 n n C7 H7 OLC sing 395 n n C7 H7A OLC sing 396 n n C15 H15 OLC sing 397 n n C15 H15A OLC sing 398 n n C13 H13 OLC sing 399 n n C13 H13A OLC sing 400 n n C6 H6 OLC sing 401 n n C6 H6A OLC sing 402 n n C14 H14 OLC sing 403 n n C14 H14A OLC sing 404 n n C5 H5 OLC sing 405 n n C5 H5A OLC sing 406 n n C4 H4 OLC sing 407 n n C4 H4A OLC sing 408 n n C3 H3 OLC sing 409 n n C3 H3A OLC sing 410 n n C2 H2 OLC sing 411 n n C2 H2A OLC sing 412 n n C21 H21 OLC sing 413 n n C21 H21A OLC sing 414 n n C22 H22 OLC sing 415 n n O25 HO25 OLC sing 416 n n O23 HO23 OLC sing 417 n n # _atom_sites.entry_id 3ODU _atom_sites.fract_transf_matrix[1][1] 0.015494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003341 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011949 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ITD A 1 1500 1500 ITD ITD . D 3 OLC A 1 1600 1600 OLC OLC . E 3 OLC A 1 1603 1603 OLC OLC . F 3 OLC A 1 1604 1604 OLC OLC . G 4 OLA A 1 1610 1610 OLA OLA . H 2 ITD B 1 1500 1500 ITD ITD . I 3 OLC B 1 1601 1601 OLC OLC . J 3 OLC B 1 1602 1602 OLC OLC . K 4 OLA B 1 1605 1605 OLA OLA . L 4 OLA B 1 1606 1606 OLA OLA . M 4 OLA B 1 1607 1607 OLA OLA . N 4 OLA B 1 1608 1608 OLA OLA . O 4 OLA B 1 1609 1609 OLA OLA . P 5 HOH A 1 1612 1612 HOH HOH . P 5 HOH A 2 1613 1613 HOH HOH . P 5 HOH A 3 1614 1614 HOH HOH . P 5 HOH A 4 1615 1615 HOH HOH . P 5 HOH A 5 1622 1622 HOH HOH . P 5 HOH A 6 1625 1625 HOH HOH . P 5 HOH A 7 1626 1626 HOH HOH . P 5 HOH A 8 1628 1628 HOH HOH . P 5 HOH A 9 1629 1629 HOH HOH . P 5 HOH A 10 1630 1630 HOH HOH . P 5 HOH A 11 1631 1631 HOH HOH . P 5 HOH A 12 1632 1632 HOH HOH . P 5 HOH A 13 1633 1633 HOH HOH . P 5 HOH A 14 1638 1638 HOH HOH . P 5 HOH A 15 1639 1639 HOH HOH . P 5 HOH A 16 1640 1640 HOH HOH . P 5 HOH A 17 1644 1644 HOH HOH . P 5 HOH A 18 1645 1645 HOH HOH . P 5 HOH A 19 1650 1650 HOH HOH . P 5 HOH A 20 1651 1651 HOH HOH . P 5 HOH A 21 1653 1653 HOH HOH . P 5 HOH A 22 1654 1654 HOH HOH . P 5 HOH A 23 1655 1655 HOH HOH . P 5 HOH A 24 1656 1656 HOH HOH . P 5 HOH A 25 1664 1664 HOH HOH . P 5 HOH A 26 1668 1668 HOH HOH . P 5 HOH A 27 1669 1669 HOH HOH . P 5 HOH A 28 1670 1670 HOH HOH . P 5 HOH A 29 1671 1671 HOH HOH . P 5 HOH A 30 1672 1672 HOH HOH . P 5 HOH A 31 1674 1674 HOH HOH . P 5 HOH A 32 1675 1675 HOH HOH . P 5 HOH A 33 1676 1676 HOH HOH . P 5 HOH A 34 1677 1677 HOH HOH . P 5 HOH A 35 1679 1679 HOH HOH . P 5 HOH A 36 1680 1680 HOH HOH . P 5 HOH A 37 1681 1681 HOH HOH . P 5 HOH A 38 1682 1682 HOH HOH . P 5 HOH A 39 1693 1693 HOH HOH . P 5 HOH A 40 1694 1694 HOH HOH . P 5 HOH A 41 1695 1695 HOH HOH . P 5 HOH A 42 1701 1701 HOH HOH . P 5 HOH A 43 1704 1704 HOH HOH . P 5 HOH A 44 1705 1705 HOH HOH . P 5 HOH A 45 1710 1710 HOH HOH . P 5 HOH A 46 1712 1712 HOH HOH . P 5 HOH A 47 1713 1713 HOH HOH . P 5 HOH A 48 1715 1715 HOH HOH . P 5 HOH A 49 1716 1716 HOH HOH . P 5 HOH A 50 1717 1717 HOH HOH . P 5 HOH A 51 1718 1718 HOH HOH . P 5 HOH A 52 1719 1719 HOH HOH . P 5 HOH A 53 1720 1720 HOH HOH . P 5 HOH A 54 1723 1723 HOH HOH . P 5 HOH A 55 1725 1725 HOH HOH . P 5 HOH A 56 1727 1727 HOH HOH . P 5 HOH A 57 1729 1729 HOH HOH . P 5 HOH A 58 1734 1734 HOH HOH . P 5 HOH A 59 1735 1735 HOH HOH . P 5 HOH A 60 1736 1736 HOH HOH . P 5 HOH A 61 1739 1739 HOH HOH . P 5 HOH A 62 1742 1742 HOH HOH . P 5 HOH A 63 1743 1743 HOH HOH . P 5 HOH A 64 1744 1744 HOH HOH . P 5 HOH A 65 1747 1747 HOH HOH . P 5 HOH A 66 1748 1748 HOH HOH . P 5 HOH A 67 1749 1749 HOH HOH . P 5 HOH A 68 1752 1752 HOH HOH . P 5 HOH A 69 1753 1753 HOH HOH . P 5 HOH A 70 1754 1754 HOH HOH . P 5 HOH A 71 1755 1755 HOH HOH . P 5 HOH A 72 1756 1756 HOH HOH . P 5 HOH A 73 1758 1758 HOH HOH . Q 5 HOH B 1 1611 1611 HOH HOH . Q 5 HOH B 2 1616 1616 HOH HOH . Q 5 HOH B 3 1617 1617 HOH HOH . Q 5 HOH B 4 1618 1618 HOH HOH . Q 5 HOH B 5 1619 1619 HOH HOH . Q 5 HOH B 6 1620 1620 HOH HOH . Q 5 HOH B 7 1621 1621 HOH HOH . Q 5 HOH B 8 1623 1623 HOH HOH . Q 5 HOH B 9 1624 1624 HOH HOH . Q 5 HOH B 10 1627 1627 HOH HOH . Q 5 HOH B 11 1634 1634 HOH HOH . Q 5 HOH B 12 1635 1635 HOH HOH . Q 5 HOH B 13 1636 1636 HOH HOH . Q 5 HOH B 14 1637 1637 HOH HOH . Q 5 HOH B 15 1641 1641 HOH HOH . Q 5 HOH B 16 1642 1642 HOH HOH . Q 5 HOH B 17 1643 1643 HOH HOH . Q 5 HOH B 18 1646 1646 HOH HOH . Q 5 HOH B 19 1648 1648 HOH HOH . Q 5 HOH B 20 1649 1649 HOH HOH . Q 5 HOH B 21 1652 1652 HOH HOH . Q 5 HOH B 22 1657 1657 HOH HOH . Q 5 HOH B 23 1658 1658 HOH HOH . Q 5 HOH B 24 1659 1659 HOH HOH . Q 5 HOH B 25 1660 1660 HOH HOH . Q 5 HOH B 26 1661 1661 HOH HOH . Q 5 HOH B 27 1662 1662 HOH HOH . Q 5 HOH B 28 1663 1663 HOH HOH . Q 5 HOH B 29 1665 1665 HOH HOH . Q 5 HOH B 30 1666 1666 HOH HOH . Q 5 HOH B 31 1667 1667 HOH HOH . Q 5 HOH B 32 1673 1673 HOH HOH . Q 5 HOH B 33 1683 1683 HOH HOH . Q 5 HOH B 34 1684 1684 HOH HOH . Q 5 HOH B 35 1685 1685 HOH HOH . Q 5 HOH B 36 1686 1686 HOH HOH . Q 5 HOH B 37 1687 1687 HOH HOH . Q 5 HOH B 38 1688 1688 HOH HOH . Q 5 HOH B 39 1689 1689 HOH HOH . Q 5 HOH B 40 1690 1690 HOH HOH . Q 5 HOH B 41 1691 1691 HOH HOH . Q 5 HOH B 42 1692 1692 HOH HOH . Q 5 HOH B 43 1696 1696 HOH HOH . Q 5 HOH B 44 1697 1697 HOH HOH . Q 5 HOH B 45 1698 1698 HOH HOH . Q 5 HOH B 46 1699 1699 HOH HOH . Q 5 HOH B 47 1700 1700 HOH HOH . Q 5 HOH B 48 1702 1702 HOH HOH . Q 5 HOH B 49 1703 1703 HOH HOH . Q 5 HOH B 50 1706 1706 HOH HOH . Q 5 HOH B 51 1707 1707 HOH HOH . Q 5 HOH B 52 1708 1708 HOH HOH . Q 5 HOH B 53 1711 1711 HOH HOH . Q 5 HOH B 54 1721 1721 HOH HOH . Q 5 HOH B 55 1722 1722 HOH HOH . Q 5 HOH B 56 1724 1724 HOH HOH . Q 5 HOH B 57 1726 1726 HOH HOH . Q 5 HOH B 58 1728 1728 HOH HOH . Q 5 HOH B 59 1730 1730 HOH HOH . Q 5 HOH B 60 1731 1731 HOH HOH . Q 5 HOH B 61 1737 1737 HOH HOH . Q 5 HOH B 62 1738 1738 HOH HOH . Q 5 HOH B 63 1740 1740 HOH HOH . Q 5 HOH B 64 1741 1741 HOH HOH . Q 5 HOH B 65 1745 1745 HOH HOH . Q 5 HOH B 66 1746 1746 HOH HOH . Q 5 HOH B 67 1750 1750 HOH HOH . Q 5 HOH B 68 1751 1751 HOH HOH . Q 5 HOH B 69 1757 1757 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 OLC . . . J 3 13.229 20.36 66.762 1 62.98 ? C10 OLC 1602 B 1 HETATM 2 C C9 OLC . . . J 3 12.764 20.134 67.993 1 55.69 ? C9 OLC 1602 B 1 HETATM 3 C C11 OLC . . . J 3 14.653 20.807 66.515 1 52.15 ? C11 OLC 1602 B 1 HETATM 4 C C8 OLC . . . J 3 13.627 20.308 69.222 1 36.82 ? C8 OLC 1602 B 1 HETATM 5 C C24 OLC . . . J 3 14.354 26.189 79.223 1 68.21 ? C24 OLC 1602 B 1 HETATM 6 C C12 OLC . . . J 3 15.172 20.232 65.198 1 74.31 ? C12 OLC 1602 B 1 HETATM 7 C C7 OLC . . . J 3 12.741 20.497 70.449 1 39.93 ? C7 OLC 1602 B 1 HETATM 8 C C15 OLC . . . J 3 16.357 18.372 62.956 1 38.63 ? C15 OLC 1602 B 1 HETATM 9 C C13 OLC . . . J 3 15.49 18.742 65.296 1 29.98 ? C13 OLC 1602 B 1 HETATM 10 C C6 OLC . . . J 3 13.323 21.551 71.386 1 34.23 ? C6 OLC 1602 B 1 HETATM 11 C C14 OLC . . . J 3 15.266 18.031 63.967 1 53.06 ? C14 OLC 1602 B 1 HETATM 12 C C5 OLC . . . J 3 12.684 21.496 72.77 1 35.17 ? C5 OLC 1602 B 1 HETATM 13 C C4 OLC . . . J 3 12.572 22.891 73.379 1 36.61 ? C4 OLC 1602 B 1 HETATM 14 C C3 OLC . . . J 3 12.468 22.818 74.899 1 30.87 ? C3 OLC 1602 B 1 HETATM 15 C C2 OLC . . . J 3 11.926 24.123 75.47 1 50.89 ? C2 OLC 1602 B 1 HETATM 16 C C21 OLC . . . J 3 14.298 23.927 78.129 1 104.54 ? C21 OLC 1602 B 1 HETATM 17 C C1 OLC . . . J 3 12.984 24.816 76.301 1 134.73 ? C1 OLC 1602 B 1 HETATM 18 C C22 OLC . . . J 3 14.53 24.688 79.432 1 125.38 ? C22 OLC 1602 B 1 HETATM 19 O O19 OLC . . . J 3 13.676 25.736 75.892 1 54.8 ? O19 OLC 1602 B 1 HETATM 20 O O25 OLC . . . J 3 15.136 26.906 80.186 1 56.63 ? O25 OLC 1602 B 1 HETATM 21 O O23 OLC . . . J 3 13.621 24.223 80.436 1 53.36 ? O23 OLC 1602 B 1 HETATM 22 O O20 OLC . . . J 3 13.035 24.269 77.556 1 48.54 ? O20 OLC 1602 B 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #