data_3OE6 # _model_server_result.job_id GMhMk7S-brOw4xtaeMIX6Q _model_server_result.datetime_utc '2024-11-24 18:00:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oe6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1600}' # _entry.id 3OE6 # _exptl.entry_id 3OE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OE6 _cell.length_a 71.121 _cell.length_b 78.711 _cell.length_c 240.592 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 78.711 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 119 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 109 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 196 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 186 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 312 n n C10 C9 OLC doub 313 n n C10 C11 OLC sing 314 n n C9 C8 OLC sing 315 n n C17 C16 OLC sing 316 z n C11 C12 OLC sing 317 n n C8 C7 OLC sing 318 n n C24 C22 OLC sing 319 n n C24 O25 OLC sing 320 n n C16 C15 OLC sing 321 n n C12 C13 OLC sing 322 n n C7 C6 OLC sing 323 n n C15 C14 OLC sing 324 n n C13 C14 OLC sing 325 n n C6 C5 OLC sing 326 n n C5 C4 OLC sing 327 n n C4 C3 OLC sing 328 n n C3 C2 OLC sing 329 n n C2 C1 OLC sing 330 n n C21 C22 OLC sing 331 n n C21 O20 OLC sing 332 n n C1 O19 OLC doub 333 n n C1 O20 OLC sing 334 n n C22 O23 OLC sing 335 n n C18 H18 OLC sing 336 n n C18 H18A OLC sing 337 n n C18 H18B OLC sing 338 n n C10 H10 OLC sing 339 n n C9 H9 OLC sing 340 n n C17 H17 OLC sing 341 n n C17 H17A OLC sing 342 n n C11 H11 OLC sing 343 n n C11 H11A OLC sing 344 n n C8 H8 OLC sing 345 n n C8 H8A OLC sing 346 n n C24 H24 OLC sing 347 n n C24 H24A OLC sing 348 n n C16 H16 OLC sing 349 n n C16 H16A OLC sing 350 n n C12 H12 OLC sing 351 n n C12 H12A OLC sing 352 n n C7 H7 OLC sing 353 n n C7 H7A OLC sing 354 n n C15 H15 OLC sing 355 n n C15 H15A OLC sing 356 n n C13 H13 OLC sing 357 n n C13 H13A OLC sing 358 n n C6 H6 OLC sing 359 n n C6 H6A OLC sing 360 n n C14 H14 OLC sing 361 n n C14 H14A OLC sing 362 n n C5 H5 OLC sing 363 n n C5 H5A OLC sing 364 n n C4 H4 OLC sing 365 n n C4 H4A OLC sing 366 n n C3 H3 OLC sing 367 n n C3 H3A OLC sing 368 n n C2 H2 OLC sing 369 n n C2 H2A OLC sing 370 n n C21 H21 OLC sing 371 n n C21 H21A OLC sing 372 n n C22 H22 OLC sing 373 n n O25 HO25 OLC sing 374 n n O23 HO23 OLC sing 375 n n # _atom_sites.entry_id 3OE6 _atom_sites.fract_transf_matrix[1][1] 0.014061 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012705 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ITD A 1 1500 1500 ITD ITD . C 3 OLC A 1 1600 1600 OLC OLC . D 3 OLC A 1 1601 1601 OLC OLC . E 3 OLC A 1 1602 1602 OLC OLC . F 4 GOL A 1 1603 1603 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 OLC . . . C 3 26.103 16.149 51.984 1 12.24 ? C8 OLC 1600 A 1 HETATM 2 C C24 OLC . . . C 3 25.035 21.215 40.758 1 111.53 ? C24 OLC 1600 A 1 HETATM 3 C C7 OLC . . . C 3 26.735 16.544 50.652 1 63.37 ? C7 OLC 1600 A 1 HETATM 4 C C6 OLC . . . C 3 25.699 16.609 49.536 1 17.29 ? C6 OLC 1600 A 1 HETATM 5 C C5 OLC . . . C 3 26.345 16.614 48.155 1 15.1 ? C5 OLC 1600 A 1 HETATM 6 C C4 OLC . . . C 3 26.849 17.994 47.735 1 52.47 ? C4 OLC 1600 A 1 HETATM 7 C C3 OLC . . . C 3 26.414 18.358 46.312 1 3 ? C3 OLC 1600 A 1 HETATM 8 C C2 OLC . . . C 3 26.267 19.871 46.176 1 73.54 ? C2 OLC 1600 A 1 HETATM 9 C C21 OLC . . . C 3 26.67 20.832 42.617 1 100.99 ? C21 OLC 1600 A 1 HETATM 10 C C1 OLC . . . C 3 27.025 20.4 44.979 1 58.71 ? C1 OLC 1600 A 1 HETATM 11 C C22 OLC . . . C 3 25.877 21.885 41.844 1 22.44 ? C22 OLC 1600 A 1 HETATM 12 O O19 OLC . . . C 3 28.224 20.625 44.987 1 134.81 ? O19 OLC 1600 A 1 HETATM 13 O O25 OLC . . . C 3 24.569 22.162 39.786 1 31.63 ? O25 OLC 1600 A 1 HETATM 14 O O23 OLC . . . C 3 25.056 22.67 42.716 1 67.58 ? O23 OLC 1600 A 1 HETATM 15 O O20 OLC . . . C 3 26.169 20.609 43.932 1 47.79 ? O20 OLC 1600 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #