data_3OE8 # _model_server_result.job_id rJ-m5KI1e5e4NvhU99FDrw _model_server_result.datetime_utc '2024-11-27 08:05:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oe8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1500}' # _entry.id 3OE8 # _exptl.entry_id 3OE8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.651 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate" _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 96 _cell.angle_beta 97.78 _cell.angle_gamma 97.38 _cell.entry_id 3OE8 _cell.length_a 69.369 _cell.length_b 76.602 _cell.length_c 91.719 _cell.Z_PDB 3 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OE8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA trimeric 3 software_defined_assembly 2 PISA monomeric 1 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,E,F 1 1 A,B,C,D,E,F 2 1 A,D 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 28 1_555 A SG CYS 448 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? disulf ? disulf2 A SG CYS 119 A CYS 109 1_555 A SG CYS 196 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 B SG CYS 38 B CYS 28 1_555 B SG CYS 448 B CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf4 B SG CYS 119 B CYS 109 1_555 B SG CYS 196 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf5 C SG CYS 38 C CYS 28 1_555 C SG CYS 448 C CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 C SG CYS 119 C CYS 109 1_555 C SG CYS 196 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C SER 239 A SER 229 1_555 A N GLY 240 A GLY 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.282 ? covale ? covale2 A C SER 241 A SER 901 1_555 A N ASN 242 A ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 B N LYS 404 B LYS 230 1_555 B C SER 403 B SER 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 B C TYR 401 B TYR 1161 1_555 B N GLY 402 B GLY 1200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.375 ? covale ? covale5 C N LYS 404 C LYS 230 1_555 C C SER 403 C SER 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 ? covale ? covale6 C C TYR 401 C TYR 1161 1_555 C N GLY 402 C GLY 1200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? # _chem_comp.formula 'C21 H34 N4 S2' _chem_comp.formula_weight 406.651 _chem_comp.id ITD _chem_comp.mon_nstd_flag . _chem_comp.name "(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ITD sing 171 n n N1 C2 ITD sing 172 n n N1 C4 ITD doub 173 n n S1 C5 ITD sing 174 n n C2 C6 ITD sing 175 n n N2 C7 ITD sing 176 n n S2 C9 ITD sing 177 n n C3 C2 ITD sing 178 n n N3 C10 ITD sing 179 n n C4 S1 ITD sing 180 n n C4 N2 ITD sing 181 n n N4 C9 ITD doub 182 n n C6 N2 ITD sing 183 n n C7 C5 ITD doub 184 n n C7 C8 ITD sing 185 n n C8 S2 ITD sing 186 n n C9 N3 ITD sing 187 n n C10 C11 ITD sing 188 n n C11 C12 ITD sing 189 n n C13 C12 ITD sing 190 n n C14 C13 ITD sing 191 n n C15 C10 ITD sing 192 n n C15 C14 ITD sing 193 n n C16 N4 ITD sing 194 n n C17 C16 ITD sing 195 n n C18 C17 ITD sing 196 n n C19 C18 ITD sing 197 n n C19 C20 ITD sing 198 n n C20 C21 ITD sing 199 n n C21 C16 ITD sing 200 n n C1 H1 ITD sing 201 n n C1 H1A ITD sing 202 n n C1 H1B ITD sing 203 n n C3 H3 ITD sing 204 n n C3 H3A ITD sing 205 n n C3 H3B ITD sing 206 n n N3 HN3 ITD sing 207 n n C5 H5 ITD sing 208 n n C6 H6 ITD sing 209 n n C6 H6A ITD sing 210 n n C8 H8 ITD sing 211 n n C8 H8A ITD sing 212 n n C10 H10 ITD sing 213 n n C11 H11 ITD sing 214 n n C11 H11A ITD sing 215 n n C12 H12 ITD sing 216 n n C12 H12A ITD sing 217 n n C13 H13 ITD sing 218 n n C13 H13A ITD sing 219 n n C14 H14 ITD sing 220 n n C14 H14A ITD sing 221 n n C15 H15 ITD sing 222 n n C15 H15A ITD sing 223 n n C16 H16 ITD sing 224 n n C17 H17 ITD sing 225 n n C17 H17A ITD sing 226 n n C18 H18 ITD sing 227 n n C18 H18A ITD sing 228 n n C19 H19 ITD sing 229 n n C19 H19A ITD sing 230 n n C20 H20 ITD sing 231 n n C20 H20A ITD sing 232 n n C21 H21 ITD sing 233 n n C21 H21A ITD sing 234 n n # _atom_sites.entry_id 3OE8 _atom_sites.fract_transf_matrix[1][1] 0.014416 _atom_sites.fract_transf_matrix[1][2] 0.001867 _atom_sites.fract_transf_matrix[1][3] 0.002218 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013164 _atom_sites.fract_transf_matrix[2][3] 0.001646 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 ITD A 1 1500 1500 ITD ITD . E 2 ITD B 1 1500 1500 ITD ITD . F 2 ITD C 1 1500 1500 ITD ITD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ITD . . . E 2 -63.28 11.408 21.786 1 89.06 ? C1 ITD 1500 B 1 HETATM 2 N N1 ITD . . . E 2 -64.261 9.21 21.342 1 223.18 ? N1 ITD 1500 B 1 HETATM 3 S S1 ITD . . . E 2 -64.889 7.1 19.618 1 81.57 ? S1 ITD 1500 B 1 HETATM 4 C C2 ITD . . . E 2 -64.514 10.649 21.312 1 51.76 ? C2 ITD 1500 B 1 HETATM 5 N N2 ITD . . . E 2 -65.019 9.636 19.342 1 128.98 ? N2 ITD 1500 B 1 HETATM 6 S S2 ITD . . . E 2 -67.709 10.061 17.102 1 103.04 ? S2 ITD 1500 B 1 HETATM 7 C C3 ITD . . . E 2 -65.733 10.95 22.176 1 50.92 ? C3 ITD 1500 B 1 HETATM 8 N N3 ITD . . . E 2 -67.688 8.317 15.295 1 117.93 ? N3 ITD 1500 B 1 HETATM 9 C C4 ITD . . . E 2 -64.594 8.702 20.151 1 203.21 ? C4 ITD 1500 B 1 HETATM 10 N N4 ITD . . . E 2 -68.956 7.732 17.203 1 152.33 ? N4 ITD 1500 B 1 HETATM 11 C C5 ITD . . . E 2 -65.464 7.735 18.099 1 147.79 ? C5 ITD 1500 B 1 HETATM 12 C C6 ITD . . . E 2 -64.851 10.985 19.852 1 89.57 ? C6 ITD 1500 B 1 HETATM 13 C C7 ITD . . . E 2 -65.46 9.151 18.159 1 158.56 ? C7 ITD 1500 B 1 HETATM 14 C C8 ITD . . . E 2 -65.947 10.057 17.055 1 224.09 ? C8 ITD 1500 B 1 HETATM 15 C C9 ITD . . . E 2 -68.188 8.584 16.505 1 39.29 ? C9 ITD 1500 B 1 HETATM 16 C C10 ITD . . . E 2 -67.833 7.148 14.448 1 45.87 ? C10 ITD 1500 B 1 HETATM 17 C C11 ITD . . . E 2 -68.678 7.369 13.203 1 153.16 ? C11 ITD 1500 B 1 HETATM 18 C C12 ITD . . . E 2 -68.315 6.287 12.191 1 27.38 ? C12 ITD 1500 B 1 HETATM 19 C C13 ITD . . . E 2 -68.563 4.892 12.764 1 169.28 ? C13 ITD 1500 B 1 HETATM 20 C C14 ITD . . . E 2 -67.864 4.669 14.106 1 24.82 ? C14 ITD 1500 B 1 HETATM 21 C C15 ITD . . . E 2 -68.105 5.8 15.104 1 132.97 ? C15 ITD 1500 B 1 HETATM 22 C C16 ITD . . . E 2 -69.47 7.896 18.564 1 24.3 ? C16 ITD 1500 B 1 HETATM 23 C C17 ITD . . . E 2 -68.437 8.413 19.576 1 42.86 ? C17 ITD 1500 B 1 HETATM 24 C C18 ITD . . . E 2 -69.012 8.631 20.974 1 41.54 ? C18 ITD 1500 B 1 HETATM 25 C C19 ITD . . . E 2 -70.336 9.397 20.956 1 151.67 ? C19 ITD 1500 B 1 HETATM 26 C C20 ITD . . . E 2 -71.34 8.807 19.967 1 37.98 ? C20 ITD 1500 B 1 HETATM 27 C C21 ITD . . . E 2 -70.735 8.749 18.569 1 95.1 ? C21 ITD 1500 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 27 #