data_3OE9 # _model_server_result.job_id e8zI-siyv1GHY7mXGI7Zyg _model_server_result.datetime_utc '2024-11-13 21:29:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oe9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1500}' # _entry.id 3OE9 # _exptl.entry_id 3OE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 406.651 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 64.66 _cell.angle_beta 73.93 _cell.angle_gamma 61.31 _cell.entry_id 3OE9 _cell.length_a 72.497 _cell.length_b 72.739 _cell.length_c 84.273 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 38 A CYS 28 1_555 A SG CYS 445 A CYS 274 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 119 A CYS 109 1_555 A SG CYS 196 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 119 B CYS 109 1_555 B SG CYS 196 B CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A C HIS 238 A HIS 228 1_555 A N ASN 239 A ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C HIS 238 B HIS 228 1_555 B N ASN 239 B ASN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.55 ? # _chem_comp.formula 'C21 H34 N4 S2' _chem_comp.formula_weight 406.651 _chem_comp.id ITD _chem_comp.mon_nstd_flag . _chem_comp.name "(6,6-dimethyl-5,6-dihydroimidazo[2,1-b][1,3]thiazol-3-yl)methyl N,N'-dicyclohexylimidothiocarbamate" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ITD sing 171 n n N1 C2 ITD sing 172 n n N1 C4 ITD doub 173 n n S1 C5 ITD sing 174 n n C2 C6 ITD sing 175 n n N2 C7 ITD sing 176 n n S2 C9 ITD sing 177 n n C3 C2 ITD sing 178 n n N3 C10 ITD sing 179 n n C4 S1 ITD sing 180 n n C4 N2 ITD sing 181 n n N4 C9 ITD doub 182 n n C6 N2 ITD sing 183 n n C7 C5 ITD doub 184 n n C7 C8 ITD sing 185 n n C8 S2 ITD sing 186 n n C9 N3 ITD sing 187 n n C10 C11 ITD sing 188 n n C11 C12 ITD sing 189 n n C13 C12 ITD sing 190 n n C14 C13 ITD sing 191 n n C15 C10 ITD sing 192 n n C15 C14 ITD sing 193 n n C16 N4 ITD sing 194 n n C17 C16 ITD sing 195 n n C18 C17 ITD sing 196 n n C19 C18 ITD sing 197 n n C19 C20 ITD sing 198 n n C20 C21 ITD sing 199 n n C21 C16 ITD sing 200 n n C1 H1 ITD sing 201 n n C1 H1A ITD sing 202 n n C1 H1B ITD sing 203 n n C3 H3 ITD sing 204 n n C3 H3A ITD sing 205 n n C3 H3B ITD sing 206 n n N3 HN3 ITD sing 207 n n C5 H5 ITD sing 208 n n C6 H6 ITD sing 209 n n C6 H6A ITD sing 210 n n C8 H8 ITD sing 211 n n C8 H8A ITD sing 212 n n C10 H10 ITD sing 213 n n C11 H11 ITD sing 214 n n C11 H11A ITD sing 215 n n C12 H12 ITD sing 216 n n C12 H12A ITD sing 217 n n C13 H13 ITD sing 218 n n C13 H13A ITD sing 219 n n C14 H14 ITD sing 220 n n C14 H14A ITD sing 221 n n C15 H15 ITD sing 222 n n C15 H15A ITD sing 223 n n C16 H16 ITD sing 224 n n C17 H17 ITD sing 225 n n C17 H17A ITD sing 226 n n C18 H18 ITD sing 227 n n C18 H18A ITD sing 228 n n C19 H19 ITD sing 229 n n C19 H19A ITD sing 230 n n C20 H20 ITD sing 231 n n C20 H20A ITD sing 232 n n C21 H21 ITD sing 233 n n C21 H21A ITD sing 234 n n # _atom_sites.entry_id 3OE9 _atom_sites.fract_transf_matrix[1][1] 0.013794 _atom_sites.fract_transf_matrix[1][2] -0.007549 _atom_sites.fract_transf_matrix[1][3] -0.001421 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015672 _atom_sites.fract_transf_matrix[2][3] -0.005857 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013183 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ITD A 1 1500 1500 ITD ITD . D 2 ITD B 1 1500 1500 ITD ITD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ITD . . . D 2 -16.63 -3.829 23.819 1 91.72 ? C1 ITD 1500 B 1 HETATM 2 N N1 ITD . . . D 2 -18.948 -3.455 24.254 1 93.82 ? N1 ITD 1500 B 1 HETATM 3 S S1 ITD . . . D 2 -21.358 -3.033 25.651 1 93.84 ? S1 ITD 1500 B 1 HETATM 4 C C2 ITD . . . D 2 -17.859 -4.384 24.508 1 91.88 ? C2 ITD 1500 B 1 HETATM 5 N N2 ITD . . . D 2 -19.086 -4.023 26.337 1 91.62 ? N2 ITD 1500 B 1 HETATM 6 S S2 ITD . . . D 2 -19.914 -6.358 28.742 1 83.04 ? S2 ITD 1500 B 1 HETATM 7 C C3 ITD . . . D 2 -18.197 -5.792 24.034 1 91.71 ? C3 ITD 1500 B 1 HETATM 8 N N3 ITD . . . D 2 -21.844 -5.437 30.024 1 81.54 ? N3 ITD 1500 B 1 HETATM 9 C C4 ITD . . . D 2 -19.729 -3.496 25.333 1 92.46 ? C4 ITD 1500 B 1 HETATM 10 N N4 ITD . . . D 2 -22.437 -7.064 28.424 1 80.64 ? N4 ITD 1500 B 1 HETATM 11 C C5 ITD . . . D 2 -21.157 -3.576 27.289 1 93.82 ? C5 ITD 1500 B 1 HETATM 12 C C6 ITD . . . D 2 -17.718 -4.405 26.032 1 91.22 ? C6 ITD 1500 B 1 HETATM 13 C C7 ITD . . . D 2 -19.841 -4.098 27.454 1 91.26 ? C7 ITD 1500 B 1 HETATM 14 C C8 ITD . . . D 2 -19.294 -4.692 28.726 1 87.68 ? C8 ITD 1500 B 1 HETATM 15 C C9 ITD . . . D 2 -21.533 -6.318 29.067 1 81.78 ? C9 ITD 1500 B 1 HETATM 16 C C10 ITD . . . D 2 -23.116 -5.043 30.618 1 79.91 ? C10 ITD 1500 B 1 HETATM 17 C C11 ITD . . . D 2 -23.747 -5.986 31.617 1 78.76 ? C11 ITD 1500 B 1 HETATM 18 C C12 ITD . . . D 2 -24.605 -5.103 32.516 1 77.71 ? C12 ITD 1500 B 1 HETATM 19 C C13 ITD . . . D 2 -25.655 -4.327 31.705 1 78.66 ? C13 ITD 1500 B 1 HETATM 20 C C14 ITD . . . D 2 -25.076 -3.561 30.508 1 77.91 ? C14 ITD 1500 B 1 HETATM 21 C C15 ITD . . . D 2 -24.169 -4.444 29.67 1 79.1 ? C15 ITD 1500 B 1 HETATM 22 C C16 ITD . . . D 2 -22.393 -7.693 27.105 1 77.82 ? C16 ITD 1500 B 1 HETATM 23 C C17 ITD . . . D 2 -21.681 -6.964 25.965 1 75.95 ? C17 ITD 1500 B 1 HETATM 24 C C18 ITD . . . D 2 -21.296 -7.816 24.738 1 76.07 ? C18 ITD 1500 B 1 HETATM 25 C C19 ITD . . . D 2 -21.31 -9.349 24.854 1 77.16 ? C19 ITD 1500 B 1 HETATM 26 C C20 ITD . . . D 2 -22.373 -9.848 25.824 1 75.62 ? C20 ITD 1500 B 1 HETATM 27 C C21 ITD . . . D 2 -22.138 -9.2 27.177 1 75.27 ? C21 ITD 1500 B 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #