data_3OEL
#
_model_server_result.job_id            LBAaM6k1VxTQcTXJXxotRw 
_model_server_result.datetime_utc      '2024-11-15 10:33:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3oel 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":287}' 
#
_entry.id    3OEL 
#
_exptl.entry_id    3OEL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              147.129 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'D-GLUTAMIC ACID' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3OEL 
_cell.length_a            59.731 
_cell.length_b            114.195 
_cell.length_c            95.314 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3OEL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? 
disulf ? disulf3 A SG CYS 229 A CYS 229 1_555 A SG CYS 284 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C5 H9 N O4' 
_chem_comp.formula_weight    147.129 
_chem_comp.id                DGL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'D-GLUTAMIC ACID' 
_chem_comp.type              'd-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA DGL sing 83 n n 
N H DGL sing 84 n n 
N H2 DGL sing 85 n n 
CA C DGL sing 86 n n 
CA CB DGL sing 87 n n 
CA HA DGL sing 88 n n 
C O DGL doub 89 n n 
C OXT DGL sing 90 n n 
CB CG DGL sing 91 n n 
CB HB2 DGL sing 92 n n 
CB HB3 DGL sing 93 n n 
CG CD DGL sing 94 n n 
CG HG2 DGL sing 95 n n 
CG HG3 DGL sing 96 n n 
CD OE1 DGL doub 97 n n 
CD OE2 DGL sing 98 n n 
OE2 HE2 DGL sing 99 n n 
OXT HXT DGL sing 100 n n 
#
_atom_sites.entry_id                     3OEL 
_atom_sites.fract_transf_matrix[1][1]    0.016742 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008757 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010492 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 DGL A 1 287 1 DGL DGL . 
C 3 HOH A 1 288 1 HOH HOH . 
C 3 HOH A 2 289 2 HOH HOH . 
C 3 HOH A 3 290 3 HOH HOH . 
C 3 HOH A 4 291 4 HOH HOH . 
C 3 HOH A 5 292 5 HOH HOH . 
C 3 HOH A 6 293 6 HOH HOH . 
C 3 HOH A 7 294 7 HOH HOH . 
C 3 HOH A 8 295 8 HOH HOH . 
C 3 HOH A 9 296 9 HOH HOH . 
C 3 HOH A 10 297 10 HOH HOH . 
C 3 HOH A 11 298 11 HOH HOH . 
C 3 HOH A 12 299 12 HOH HOH . 
C 3 HOH A 13 300 13 HOH HOH . 
C 3 HOH A 14 301 14 HOH HOH . 
C 3 HOH A 15 302 15 HOH HOH . 
C 3 HOH A 16 303 16 HOH HOH . 
C 3 HOH A 17 304 17 HOH HOH . 
C 3 HOH A 18 305 18 HOH HOH . 
C 3 HOH A 19 306 19 HOH HOH . 
C 3 HOH A 20 307 20 HOH HOH . 
C 3 HOH A 21 308 21 HOH HOH . 
C 3 HOH A 22 309 22 HOH HOH . 
C 3 HOH A 23 310 23 HOH HOH . 
C 3 HOH A 24 311 24 HOH HOH . 
C 3 HOH A 25 312 25 HOH HOH . 
C 3 HOH A 26 313 26 HOH HOH . 
C 3 HOH A 27 314 27 HOH HOH . 
C 3 HOH A 28 315 28 HOH HOH . 
C 3 HOH A 29 316 29 HOH HOH . 
C 3 HOH A 30 317 30 HOH HOH . 
C 3 HOH A 31 318 31 HOH HOH . 
C 3 HOH A 32 319 32 HOH HOH . 
C 3 HOH A 33 320 33 HOH HOH . 
C 3 HOH A 34 321 34 HOH HOH . 
C 3 HOH A 35 322 35 HOH HOH . 
C 3 HOH A 36 323 36 HOH HOH . 
C 3 HOH A 37 324 37 HOH HOH . 
C 3 HOH A 38 325 38 HOH HOH . 
C 3 HOH A 39 326 39 HOH HOH . 
C 3 HOH A 40 327 40 HOH HOH . 
C 3 HOH A 41 328 41 HOH HOH . 
C 3 HOH A 42 329 42 HOH HOH . 
C 3 HOH A 43 330 43 HOH HOH . 
C 3 HOH A 44 331 44 HOH HOH . 
C 3 HOH A 45 332 45 HOH HOH . 
C 3 HOH A 46 333 46 HOH HOH . 
C 3 HOH A 47 334 47 HOH HOH . 
C 3 HOH A 48 335 48 HOH HOH . 
C 3 HOH A 49 336 49 HOH HOH . 
C 3 HOH A 50 337 50 HOH HOH . 
C 3 HOH A 51 338 51 HOH HOH . 
C 3 HOH A 52 339 52 HOH HOH . 
C 3 HOH A 53 340 53 HOH HOH . 
C 3 HOH A 54 341 54 HOH HOH . 
C 3 HOH A 55 342 55 HOH HOH . 
C 3 HOH A 56 343 56 HOH HOH . 
C 3 HOH A 57 344 57 HOH HOH . 
C 3 HOH A 58 345 58 HOH HOH . 
C 3 HOH A 59 346 59 HOH HOH . 
C 3 HOH A 60 347 60 HOH HOH . 
C 3 HOH A 61 348 61 HOH HOH . 
C 3 HOH A 62 349 62 HOH HOH . 
C 3 HOH A 63 350 63 HOH HOH . 
C 3 HOH A 64 351 64 HOH HOH . 
C 3 HOH A 65 352 65 HOH HOH . 
C 3 HOH A 66 353 66 HOH HOH . 
C 3 HOH A 67 354 67 HOH HOH . 
C 3 HOH A 68 355 68 HOH HOH . 
C 3 HOH A 69 356 69 HOH HOH . 
C 3 HOH A 70 357 70 HOH HOH . 
C 3 HOH A 71 358 71 HOH HOH . 
C 3 HOH A 72 359 72 HOH HOH . 
C 3 HOH A 73 360 73 HOH HOH . 
C 3 HOH A 74 361 74 HOH HOH . 
C 3 HOH A 75 362 75 HOH HOH . 
C 3 HOH A 76 363 76 HOH HOH . 
C 3 HOH A 77 364 77 HOH HOH . 
C 3 HOH A 78 365 78 HOH HOH . 
C 3 HOH A 79 366 79 HOH HOH . 
C 3 HOH A 80 367 80 HOH HOH . 
C 3 HOH A 81 368 81 HOH HOH . 
C 3 HOH A 82 369 82 HOH HOH . 
C 3 HOH A 83 370 83 HOH HOH . 
C 3 HOH A 84 371 84 HOH HOH . 
C 3 HOH A 85 372 85 HOH HOH . 
C 3 HOH A 86 373 86 HOH HOH . 
C 3 HOH A 87 374 87 HOH HOH . 
C 3 HOH A 88 375 88 HOH HOH . 
C 3 HOH A 89 376 89 HOH HOH . 
C 3 HOH A 90 377 90 HOH HOH . 
C 3 HOH A 91 378 91 HOH HOH . 
C 3 HOH A 92 379 92 HOH HOH . 
C 3 HOH A 93 380 93 HOH HOH . 
C 3 HOH A 94 381 94 HOH HOH . 
C 3 HOH A 95 382 95 HOH HOH . 
C 3 HOH A 96 383 96 HOH HOH . 
C 3 HOH A 97 384 97 HOH HOH . 
C 3 HOH A 98 385 98 HOH HOH . 
C 3 HOH A 99 386 99 HOH HOH . 
C 3 HOH A 100 387 100 HOH HOH . 
C 3 HOH A 101 388 101 HOH HOH . 
C 3 HOH A 102 389 102 HOH HOH . 
C 3 HOH A 103 390 103 HOH HOH . 
C 3 HOH A 104 391 104 HOH HOH . 
C 3 HOH A 105 392 105 HOH HOH . 
C 3 HOH A 106 393 106 HOH HOH . 
C 3 HOH A 107 394 107 HOH HOH . 
C 3 HOH A 108 395 108 HOH HOH . 
C 3 HOH A 109 396 109 HOH HOH . 
C 3 HOH A 110 397 110 HOH HOH . 
C 3 HOH A 111 398 111 HOH HOH . 
C 3 HOH A 112 399 112 HOH HOH . 
C 3 HOH A 113 400 113 HOH HOH . 
C 3 HOH A 114 401 114 HOH HOH . 
C 3 HOH A 115 402 115 HOH HOH . 
C 3 HOH A 116 403 116 HOH HOH . 
C 3 HOH A 117 404 117 HOH HOH . 
C 3 HOH A 118 405 118 HOH HOH . 
C 3 HOH A 119 406 119 HOH HOH . 
C 3 HOH A 120 407 120 HOH HOH . 
C 3 HOH A 121 408 121 HOH HOH . 
C 3 HOH A 122 409 122 HOH HOH . 
C 3 HOH A 123 410 123 HOH HOH . 
C 3 HOH A 124 411 124 HOH HOH . 
C 3 HOH A 125 412 125 HOH HOH . 
C 3 HOH A 126 413 126 HOH HOH . 
C 3 HOH A 127 414 127 HOH HOH . 
C 3 HOH A 128 415 128 HOH HOH . 
C 3 HOH A 129 416 129 HOH HOH . 
C 3 HOH A 130 417 130 HOH HOH . 
C 3 HOH A 131 418 131 HOH HOH . 
C 3 HOH A 132 419 132 HOH HOH . 
C 3 HOH A 133 420 133 HOH HOH . 
C 3 HOH A 134 421 134 HOH HOH . 
C 3 HOH A 135 422 135 HOH HOH . 
C 3 HOH A 136 423 136 HOH HOH . 
C 3 HOH A 137 424 137 HOH HOH . 
C 3 HOH A 138 425 138 HOH HOH . 
C 3 HOH A 139 426 139 HOH HOH . 
C 3 HOH A 140 427 140 HOH HOH . 
C 3 HOH A 141 428 141 HOH HOH . 
C 3 HOH A 142 429 142 HOH HOH . 
C 3 HOH A 143 430 143 HOH HOH . 
C 3 HOH A 144 431 144 HOH HOH . 
C 3 HOH A 145 432 145 HOH HOH . 
C 3 HOH A 146 433 146 HOH HOH . 
C 3 HOH A 147 434 147 HOH HOH . 
C 3 HOH A 148 435 148 HOH HOH . 
C 3 HOH A 149 436 149 HOH HOH . 
C 3 HOH A 150 437 150 HOH HOH . 
C 3 HOH A 151 438 151 HOH HOH . 
C 3 HOH A 152 439 152 HOH HOH . 
C 3 HOH A 153 440 153 HOH HOH . 
C 3 HOH A 154 441 154 HOH HOH . 
C 3 HOH A 155 442 155 HOH HOH . 
C 3 HOH A 156 443 156 HOH HOH . 
C 3 HOH A 157 444 157 HOH HOH . 
C 3 HOH A 158 445 158 HOH HOH . 
C 3 HOH A 159 446 159 HOH HOH . 
C 3 HOH A 160 447 160 HOH HOH . 
C 3 HOH A 161 448 161 HOH HOH . 
C 3 HOH A 162 449 162 HOH HOH . 
C 3 HOH A 163 450 163 HOH HOH . 
C 3 HOH A 164 451 164 HOH HOH . 
C 3 HOH A 165 452 165 HOH HOH . 
C 3 HOH A 166 453 166 HOH HOH . 
C 3 HOH A 167 454 167 HOH HOH . 
C 3 HOH A 168 455 168 HOH HOH . 
C 3 HOH A 169 456 236 HOH HOH . 
C 3 HOH A 170 457 237 HOH HOH . 
C 3 HOH A 171 458 238 HOH HOH . 
C 3 HOH A 172 459 169 HOH HOH . 
C 3 HOH A 173 460 170 HOH HOH . 
C 3 HOH A 174 461 171 HOH HOH . 
C 3 HOH A 175 462 172 HOH HOH . 
C 3 HOH A 176 463 173 HOH HOH . 
C 3 HOH A 177 464 174 HOH HOH . 
C 3 HOH A 178 465 175 HOH HOH . 
C 3 HOH A 179 466 176 HOH HOH . 
C 3 HOH A 180 467 177 HOH HOH . 
C 3 HOH A 181 468 178 HOH HOH . 
C 3 HOH A 182 469 179 HOH HOH . 
C 3 HOH A 183 470 180 HOH HOH . 
C 3 HOH A 184 471 181 HOH HOH . 
C 3 HOH A 185 472 182 HOH HOH . 
C 3 HOH A 186 473 183 HOH HOH . 
C 3 HOH A 187 474 184 HOH HOH . 
C 3 HOH A 188 475 185 HOH HOH . 
C 3 HOH A 189 476 186 HOH HOH . 
C 3 HOH A 190 477 187 HOH HOH . 
C 3 HOH A 191 478 188 HOH HOH . 
C 3 HOH A 192 479 189 HOH HOH . 
C 3 HOH A 193 480 190 HOH HOH . 
C 3 HOH A 194 481 191 HOH HOH . 
C 3 HOH A 195 482 192 HOH HOH . 
C 3 HOH A 196 483 193 HOH HOH . 
C 3 HOH A 197 484 194 HOH HOH . 
C 3 HOH A 198 485 195 HOH HOH . 
C 3 HOH A 199 486 196 HOH HOH . 
C 3 HOH A 200 487 197 HOH HOH . 
C 3 HOH A 201 488 198 HOH HOH . 
C 3 HOH A 202 489 199 HOH HOH . 
C 3 HOH A 203 490 200 HOH HOH . 
C 3 HOH A 204 491 201 HOH HOH . 
C 3 HOH A 205 492 202 HOH HOH . 
C 3 HOH A 206 493 203 HOH HOH . 
C 3 HOH A 207 494 204 HOH HOH . 
C 3 HOH A 208 495 205 HOH HOH . 
C 3 HOH A 209 496 206 HOH HOH . 
C 3 HOH A 210 497 207 HOH HOH . 
C 3 HOH A 211 498 208 HOH HOH . 
C 3 HOH A 212 499 209 HOH HOH . 
C 3 HOH A 213 500 210 HOH HOH . 
C 3 HOH A 214 501 211 HOH HOH . 
C 3 HOH A 215 502 212 HOH HOH . 
C 3 HOH A 216 503 239 HOH HOH . 
C 3 HOH A 217 504 213 HOH HOH . 
C 3 HOH A 218 505 214 HOH HOH . 
C 3 HOH A 219 506 215 HOH HOH . 
C 3 HOH A 220 507 216 HOH HOH . 
C 3 HOH A 221 508 217 HOH HOH . 
C 3 HOH A 222 509 218 HOH HOH . 
C 3 HOH A 223 510 219 HOH HOH . 
C 3 HOH A 224 511 220 HOH HOH . 
C 3 HOH A 225 512 221 HOH HOH . 
C 3 HOH A 226 513 222 HOH HOH . 
C 3 HOH A 227 514 223 HOH HOH . 
C 3 HOH A 228 515 224 HOH HOH . 
C 3 HOH A 229 516 225 HOH HOH . 
C 3 HOH A 230 517 226 HOH HOH . 
C 3 HOH A 231 518 227 HOH HOH . 
C 3 HOH A 232 519 228 HOH HOH . 
C 3 HOH A 233 520 229 HOH HOH . 
C 3 HOH A 234 521 230 HOH HOH . 
C 3 HOH A 235 522 231 HOH HOH . 
C 3 HOH A 236 523 232 HOH HOH . 
C 3 HOH A 237 524 233 HOH HOH . 
C 3 HOH A 238 525 234 HOH HOH . 
C 3 HOH A 239 526 235 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N DGL . . . B 2 9.415 38.448 8.83 1 20.42 ? N DGL 287 A 1 
HETATM 2 C CA DGL . . . B 2 8.404 38.171 9.883 1 20.52 ? CA DGL 287 A 1 
HETATM 3 C C DGL . . . B 2 7.828 36.798 9.718 1 18.78 ? C DGL 287 A 1 
HETATM 4 O O DGL . . . B 2 7.191 36.299 10.666 1 18.68 ? O DGL 287 A 1 
HETATM 5 C CB DGL . . . B 2 9.042 38.287 11.268 1 22.05 ? CB DGL 287 A 1 
HETATM 6 C CG DGL . . . B 2 8.337 39.341 12.111 1 22.67 ? CG DGL 287 A 1 
HETATM 7 C CD DGL . . . B 2 8.738 39.166 13.56 1 23.4 ? CD DGL 287 A 1 
HETATM 8 O OE1 DGL . . . B 2 9.789 39.71 13.96 1 24.48 ? OE1 DGL 287 A 1 
HETATM 9 O OE2 DGL . . . B 2 7.997 38.485 14.299 1 23.04 ? OE2 DGL 287 A 1 
HETATM 10 O OXT DGL . . . B 2 7.998 36.202 8.631 1 20.05 ? OXT DGL 287 A 1 
#
_model_server_stats.io_time_ms              59 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           283 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           10 
#