data_3OEM # _model_server_result.job_id F7oquNzNHuA2XpI_IHuQ-Q _model_server_result.datetime_utc '2025-01-26 14:02:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oem # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":287}' # _entry.id 3OEM # _exptl.entry_id 3OEM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'N-methyl-D-aspartic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3OEM _cell.length_a 59.819 _cell.length_b 113.885 _cell.length_c 94.666 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OEM _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 A SG CYS 37 A CYS 37 1_555 A SG CYS 59 A CYS 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf3 A SG CYS 229 A CYS 229 1_555 A SG CYS 284 A CYS 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? # _chem_comp.formula 'C5 H9 N O4' _chem_comp.formula_weight 147.129 _chem_comp.id OEM _chem_comp.mon_nstd_flag . _chem_comp.name 'N-methyl-D-aspartic acid' _chem_comp.type 'd-peptide linking' _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3OEM _atom_sites.fract_transf_matrix[1][1] 0.016717 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008781 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OEM A 1 287 1 OEM OEM . C 3 HOH A 1 288 1 HOH HOH . C 3 HOH A 2 289 2 HOH HOH . C 3 HOH A 3 290 3 HOH HOH . C 3 HOH A 4 291 4 HOH HOH . C 3 HOH A 5 292 5 HOH HOH . C 3 HOH A 6 293 6 HOH HOH . C 3 HOH A 7 294 7 HOH HOH . C 3 HOH A 8 295 8 HOH HOH . C 3 HOH A 9 296 9 HOH HOH . C 3 HOH A 10 297 10 HOH HOH . C 3 HOH A 11 298 11 HOH HOH . C 3 HOH A 12 299 12 HOH HOH . C 3 HOH A 13 300 13 HOH HOH . C 3 HOH A 14 301 14 HOH HOH . C 3 HOH A 15 302 15 HOH HOH . C 3 HOH A 16 303 16 HOH HOH . C 3 HOH A 17 304 17 HOH HOH . C 3 HOH A 18 305 18 HOH HOH . C 3 HOH A 19 306 19 HOH HOH . C 3 HOH A 20 307 20 HOH HOH . C 3 HOH A 21 308 21 HOH HOH . C 3 HOH A 22 309 22 HOH HOH . C 3 HOH A 23 310 23 HOH HOH . C 3 HOH A 24 311 24 HOH HOH . C 3 HOH A 25 312 25 HOH HOH . C 3 HOH A 26 313 26 HOH HOH . C 3 HOH A 27 314 27 HOH HOH . C 3 HOH A 28 315 28 HOH HOH . C 3 HOH A 29 316 29 HOH HOH . C 3 HOH A 30 317 30 HOH HOH . C 3 HOH A 31 318 31 HOH HOH . C 3 HOH A 32 319 32 HOH HOH . C 3 HOH A 33 320 33 HOH HOH . C 3 HOH A 34 321 34 HOH HOH . C 3 HOH A 35 322 35 HOH HOH . C 3 HOH A 36 323 36 HOH HOH . C 3 HOH A 37 324 37 HOH HOH . C 3 HOH A 38 325 38 HOH HOH . C 3 HOH A 39 326 39 HOH HOH . C 3 HOH A 40 327 40 HOH HOH . C 3 HOH A 41 328 41 HOH HOH . C 3 HOH A 42 329 42 HOH HOH . C 3 HOH A 43 330 43 HOH HOH . C 3 HOH A 44 331 44 HOH HOH . C 3 HOH A 45 332 45 HOH HOH . C 3 HOH A 46 333 46 HOH HOH . C 3 HOH A 47 334 47 HOH HOH . C 3 HOH A 48 335 48 HOH HOH . C 3 HOH A 49 336 49 HOH HOH . C 3 HOH A 50 337 50 HOH HOH . C 3 HOH A 51 338 51 HOH HOH . C 3 HOH A 52 339 52 HOH HOH . C 3 HOH A 53 340 53 HOH HOH . C 3 HOH A 54 341 54 HOH HOH . C 3 HOH A 55 342 55 HOH HOH . C 3 HOH A 56 343 56 HOH HOH . C 3 HOH A 57 344 57 HOH HOH . C 3 HOH A 58 345 58 HOH HOH . C 3 HOH A 59 346 59 HOH HOH . C 3 HOH A 60 347 60 HOH HOH . C 3 HOH A 61 348 61 HOH HOH . C 3 HOH A 62 349 62 HOH HOH . C 3 HOH A 63 350 63 HOH HOH . C 3 HOH A 64 351 64 HOH HOH . C 3 HOH A 65 352 65 HOH HOH . C 3 HOH A 66 353 66 HOH HOH . C 3 HOH A 67 354 67 HOH HOH . C 3 HOH A 68 355 68 HOH HOH . C 3 HOH A 69 356 69 HOH HOH . C 3 HOH A 70 357 70 HOH HOH . C 3 HOH A 71 358 71 HOH HOH . C 3 HOH A 72 359 72 HOH HOH . C 3 HOH A 73 360 73 HOH HOH . C 3 HOH A 74 361 74 HOH HOH . C 3 HOH A 75 362 75 HOH HOH . C 3 HOH A 76 363 76 HOH HOH . C 3 HOH A 77 364 77 HOH HOH . C 3 HOH A 78 365 78 HOH HOH . C 3 HOH A 79 366 79 HOH HOH . C 3 HOH A 80 367 80 HOH HOH . C 3 HOH A 81 368 81 HOH HOH . C 3 HOH A 82 369 82 HOH HOH . C 3 HOH A 83 370 83 HOH HOH . C 3 HOH A 84 371 84 HOH HOH . C 3 HOH A 85 372 85 HOH HOH . C 3 HOH A 86 373 86 HOH HOH . C 3 HOH A 87 374 87 HOH HOH . C 3 HOH A 88 375 88 HOH HOH . C 3 HOH A 89 376 89 HOH HOH . C 3 HOH A 90 377 90 HOH HOH . C 3 HOH A 91 378 91 HOH HOH . C 3 HOH A 92 379 92 HOH HOH . C 3 HOH A 93 380 93 HOH HOH . C 3 HOH A 94 381 94 HOH HOH . C 3 HOH A 95 382 95 HOH HOH . C 3 HOH A 96 383 96 HOH HOH . C 3 HOH A 97 384 97 HOH HOH . C 3 HOH A 98 385 98 HOH HOH . C 3 HOH A 99 386 99 HOH HOH . C 3 HOH A 100 387 100 HOH HOH . C 3 HOH A 101 388 101 HOH HOH . C 3 HOH A 102 389 102 HOH HOH . C 3 HOH A 103 390 103 HOH HOH . C 3 HOH A 104 391 104 HOH HOH . C 3 HOH A 105 392 105 HOH HOH . C 3 HOH A 106 393 106 HOH HOH . C 3 HOH A 107 394 107 HOH HOH . C 3 HOH A 108 395 108 HOH HOH . C 3 HOH A 109 396 109 HOH HOH . C 3 HOH A 110 397 110 HOH HOH . C 3 HOH A 111 398 111 HOH HOH . C 3 HOH A 112 399 112 HOH HOH . C 3 HOH A 113 400 113 HOH HOH . C 3 HOH A 114 401 114 HOH HOH . C 3 HOH A 115 402 115 HOH HOH . C 3 HOH A 116 403 116 HOH HOH . C 3 HOH A 117 404 117 HOH HOH . C 3 HOH A 118 405 118 HOH HOH . C 3 HOH A 119 406 119 HOH HOH . C 3 HOH A 120 407 120 HOH HOH . C 3 HOH A 121 408 121 HOH HOH . C 3 HOH A 122 409 122 HOH HOH . C 3 HOH A 123 410 123 HOH HOH . C 3 HOH A 124 411 124 HOH HOH . C 3 HOH A 125 412 125 HOH HOH . C 3 HOH A 126 413 126 HOH HOH . C 3 HOH A 127 414 127 HOH HOH . C 3 HOH A 128 415 128 HOH HOH . C 3 HOH A 129 416 129 HOH HOH . C 3 HOH A 130 417 130 HOH HOH . C 3 HOH A 131 418 131 HOH HOH . C 3 HOH A 132 419 132 HOH HOH . C 3 HOH A 133 420 133 HOH HOH . C 3 HOH A 134 421 134 HOH HOH . C 3 HOH A 135 422 135 HOH HOH . C 3 HOH A 136 423 136 HOH HOH . C 3 HOH A 137 424 137 HOH HOH . C 3 HOH A 138 425 138 HOH HOH . C 3 HOH A 139 426 139 HOH HOH . C 3 HOH A 140 427 140 HOH HOH . C 3 HOH A 141 428 141 HOH HOH . C 3 HOH A 142 429 142 HOH HOH . C 3 HOH A 143 430 143 HOH HOH . C 3 HOH A 144 431 144 HOH HOH . C 3 HOH A 145 432 145 HOH HOH . C 3 HOH A 146 433 146 HOH HOH . C 3 HOH A 147 434 147 HOH HOH . C 3 HOH A 148 435 148 HOH HOH . C 3 HOH A 149 436 149 HOH HOH . C 3 HOH A 150 437 150 HOH HOH . C 3 HOH A 151 438 151 HOH HOH . C 3 HOH A 152 439 152 HOH HOH . C 3 HOH A 153 440 153 HOH HOH . C 3 HOH A 154 441 154 HOH HOH . C 3 HOH A 155 442 155 HOH HOH . C 3 HOH A 156 443 156 HOH HOH . C 3 HOH A 157 444 157 HOH HOH . C 3 HOH A 158 445 158 HOH HOH . C 3 HOH A 159 446 159 HOH HOH . C 3 HOH A 160 447 160 HOH HOH . C 3 HOH A 161 448 161 HOH HOH . C 3 HOH A 162 449 162 HOH HOH . C 3 HOH A 163 450 163 HOH HOH . C 3 HOH A 164 451 164 HOH HOH . C 3 HOH A 165 452 165 HOH HOH . C 3 HOH A 166 453 166 HOH HOH . C 3 HOH A 167 454 167 HOH HOH . C 3 HOH A 168 455 168 HOH HOH . C 3 HOH A 169 456 169 HOH HOH . C 3 HOH A 170 457 170 HOH HOH . C 3 HOH A 171 458 171 HOH HOH . C 3 HOH A 172 459 172 HOH HOH . C 3 HOH A 173 460 173 HOH HOH . C 3 HOH A 174 461 174 HOH HOH . C 3 HOH A 175 462 175 HOH HOH . C 3 HOH A 176 463 176 HOH HOH . C 3 HOH A 177 464 177 HOH HOH . C 3 HOH A 178 465 178 HOH HOH . C 3 HOH A 179 466 179 HOH HOH . C 3 HOH A 180 467 180 HOH HOH . C 3 HOH A 181 468 181 HOH HOH . C 3 HOH A 182 469 182 HOH HOH . C 3 HOH A 183 470 183 HOH HOH . C 3 HOH A 184 471 184 HOH HOH . C 3 HOH A 185 472 185 HOH HOH . C 3 HOH A 186 473 186 HOH HOH . C 3 HOH A 187 474 187 HOH HOH . C 3 HOH A 188 475 188 HOH HOH . C 3 HOH A 189 476 189 HOH HOH . C 3 HOH A 190 477 190 HOH HOH . C 3 HOH A 191 478 191 HOH HOH . C 3 HOH A 192 479 192 HOH HOH . C 3 HOH A 193 480 193 HOH HOH . C 3 HOH A 194 481 194 HOH HOH . C 3 HOH A 195 482 195 HOH HOH . C 3 HOH A 196 483 196 HOH HOH . C 3 HOH A 197 484 197 HOH HOH . C 3 HOH A 198 485 198 HOH HOH . C 3 HOH A 199 486 199 HOH HOH . C 3 HOH A 200 487 200 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C OEM . . . B 2 7.779 36.719 9.936 1 13.74 ? C OEM 287 A 1 HETATM 2 N N OEM . . . B 2 9.392 38.495 9.628 1 18.02 ? N OEM 287 A 1 HETATM 3 O O OEM . . . B 2 8.269 36.126 8.946 1 14.86 ? O OEM 287 A 1 HETATM 4 C CA OEM . . . B 2 8.034 38.198 10.053 1 17.62 ? CA OEM 287 A 1 HETATM 5 C CB OEM . . . B 2 7.681 38.774 11.436 1 17.96 ? CB OEM 287 A 1 HETATM 6 C CG OEM . . . B 2 8.598 38.25 12.521 1 21.73 ? CG OEM 287 A 1 HETATM 7 C CAA OEM . . . B 2 9.839 39.857 9.387 1 17.56 ? CAA OEM 287 A 1 HETATM 8 O OD1 OEM . . . B 2 9.753 37.914 12.2 1 27.69 ? OD1 OEM 287 A 1 HETATM 9 O OD2 OEM . . . B 2 8.171 38.17 13.694 1 21.45 ? OD2 OEM 287 A 1 HETATM 10 O OXT OEM . . . B 2 7.08 36.142 10.786 1 12.66 ? OXT OEM 287 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #