data_3OEV # _model_server_result.job_id MPiciC-aXbDacuuquNO6ig _model_server_result.datetime_utc '2025-03-06 10:32:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oev # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JA","auth_seq_id":213}' # _entry.id 3OEV # _exptl.entry_id 3OEV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 599.74 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4-(benzyloxy)-N-[(2S,3R)-3-hydroxy-1-{[(2S)-1-{[(3-methylthiophen-2-yl)methyl]amino}-1-oxo-4-phenylbutan-2-yl]amino}-1-oxobutan-2-yl]benzamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 113.17 _cell.angle_gamma 90 _cell.entry_id 3OEV _cell.length_a 136.067 _cell.length_b 299.946 _cell.length_c 145.621 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OEV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details 28-meric _pdbx_struct_assembly.oligomeric_count 28 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 16 JA N N ? 16 OA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D OE2 GLU 105 D GLU 105 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc2 F OG SER 7 F SER 13 1_555 DA MG MG . F MG 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.442 ? metalc ? metalc3 F O ALA 158 F ALA 164 1_555 CA MG MG . F MG 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc4 EA MG MG . G MG 1 1_555 G OG1 THR 8 G THR 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc5 EA MG MG . G MG 1 1_555 G O TYR 119 G TYR 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 EA MG MG . G MG 1 1_555 G O ARG 122 G ARG 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc7 EA MG MG . G MG 1 1_555 G O MET 125 G MET 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc8 H O ILE 163 H ILE 163 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc9 H O ASP 166 H ASP 166 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.428 ? metalc ? metalc10 H O SER 169 H SER 169 1_555 FA MG MG . H MG 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc11 FA MG MG . H MG 224 1_555 Z OXT ASP 222 Z ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc12 I O GLY 139 I GLY 128 1_555 GA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? metalc ? metalc13 I OG SER 142 I SER 131 1_555 GA MG MG . I MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc14 I O ALA 174 I ALA 163 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc15 I O ASP 177 I ASP 166 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc16 I O SER 180 I SER 169 1_555 HA MG MG . I MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? metalc ? metalc17 K O ALA 165 K ALA 163 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc18 K O ASP 168 K ASP 166 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc19 K O SER 171 K SER 169 1_555 IA MG MG . K MG 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc20 IA MG MG . K MG 212 1_555 W O ASP 204 W ASP 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc21 L OG SER 85 L SER 75 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? metalc ? metalc22 L OG SER 88 L SER 78 1_555 LA MG MG . L MG 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? metalc ? metalc23 L O THR 192 L THR 163 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc24 L O HIS 195 L HIS 166 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? metalc ? metalc25 L O VAL 198 L VAL 169 1_555 MA MG MG . L MG 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc26 N O ILE 163 N ILE 163 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? metalc ? metalc27 N O ASP 166 N ASP 166 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? metalc ? metalc28 N O SER 169 N SER 169 1_555 NA MG MG . N MG 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? # _chem_comp.formula 'C34 H37 N3 O5 S' _chem_comp.formula_weight 599.74 _chem_comp.id 3OE _chem_comp.mon_nstd_flag . _chem_comp.name 4-(benzyloxy)-N-[(2S,3R)-3-hydroxy-1-{[(2S)-1-{[(3-methylthiophen-2-yl)methyl]amino}-1-oxo-4-phenylbutan-2-yl]amino}-1-oxobutan-2-yl]benzamide _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 C4 3OE doub 1 n y C4 S3 3OE sing 2 n y C4 H4 3OE sing 3 n n C6 C5 3OE sing 4 n y C5 H5 3OE sing 5 n n C7 C6 3OE sing 6 n n C6 C1 3OE doub 7 n y C7 H7 3OE sing 8 n n C7 H7A 3OE sing 9 n n C7 H7B 3OE sing 10 n n C27 C8 3OE sing 11 n n C8 C34 3OE doub 12 n y C8 C30 3OE sing 13 n y N13 C15 3OE sing 14 n n O16 C15 3OE doub 15 n n C15 C17 3OE sing 16 n n C19 C17 3OE sing 17 n n C17 N18 3OE sing 18 n n C17 H17 3OE sing 19 n n C22 C21 3OE doub 20 n y C14 C21 3OE sing 21 n n C21 C23 3OE sing 22 n y C22 C24 3OE sing 23 n y C22 H22 3OE sing 24 n n C24 C25 3OE doub 25 n y C24 H24 3OE sing 26 n n C25 C26 3OE sing 27 n y C23 C26 3OE doub 28 n y C26 H26 3OE sing 29 n n C1 S3 3OE sing 30 n y C2 C1 3OE sing 31 n n C2 N29 3OE sing 32 n n C2 H2 3OE sing 33 n n C2 H2A 3OE sing 34 n n N29 C9 3OE sing 35 n n N29 HN29 3OE sing 36 n n O10 C9 3OE doub 37 n n C9 C11 3OE sing 38 n n C12 C11 3OE sing 39 n n C11 N13 3OE sing 40 n n C11 H11 3OE sing 41 n n C12 C14 3OE sing 42 n n C12 H12 3OE sing 43 n n C12 H12A 3OE sing 44 n n C14 H14 3OE sing 45 n n C14 H14A 3OE sing 46 n n C25 H25 3OE sing 47 n n C23 H23 3OE sing 48 n n N13 HN13 3OE sing 49 n n C43 C19 3OE sing 50 n n C19 O20 3OE sing 51 n n C19 H19 3OE sing 52 n n C43 H43 3OE sing 53 n n C43 H43A 3OE sing 54 n n C43 H43B 3OE sing 55 n n O20 HO20 3OE sing 56 n n N18 C27 3OE sing 57 n n N18 HN18 3OE sing 58 n n O28 C27 3OE doub 59 n n C34 C33 3OE sing 60 n y C34 H34 3OE sing 61 n n C33 C32 3OE doub 62 n y C33 H33 3OE sing 63 n n C30 C31 3OE doub 64 n y C30 H30 3OE sing 65 n n C31 C32 3OE sing 66 n y C31 H31 3OE sing 67 n n C32 O35 3OE sing 68 n n O35 C36 3OE sing 69 n n C36 C37 3OE sing 70 n n C36 H36 3OE sing 71 n n C36 H36A 3OE sing 72 n n C37 C42 3OE doub 73 n y C37 C38 3OE sing 74 n y C38 C39 3OE doub 75 n y C38 H38 3OE sing 76 n n C39 C40 3OE sing 77 n y C39 H39 3OE sing 78 n n C41 C40 3OE doub 79 n y C40 H40 3OE sing 80 n n C42 C41 3OE sing 81 n y C41 H41 3OE sing 82 n n C42 H42 3OE sing 83 n n # _atom_sites.entry_id 3OEV _atom_sites.fract_transf_matrix[1][1] 0.007349 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003146 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003334 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00747 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code CA 15 MG F 1 242 9 MG MG . DA 15 MG F 1 243 10 MG MG . EA 15 MG G 1 1 1 MG MG . FA 15 MG H 1 224 7 MG MG . GA 15 MG I 1 195 3 MG MG . HA 15 MG I 1 196 5 MG MG . IA 15 MG K 1 212 8 MG MG . JA 16 3OE K 1 213 1 3OE 3OE . KA 17 MES K 1 214 1 MES MES . LA 15 MG L 1 195 2 MG MG . MA 15 MG L 1 196 4 MG MG . NA 15 MG N 1 188 6 MG MG . OA 16 3OE Y 1 212 1 3OE 3OE . PA 17 MES Y 1 213 1 MES MES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 3OE . . . JA 16 11.87 -137.36 22.803 1 65.21 ? C8 3OE 213 K 1 HETATM 2 C C27 3OE . . . JA 16 11.263 -137.801 21.462 1 64.27 ? C27 3OE 213 K 1 HETATM 3 O O28 3OE . . . JA 16 11.544 -138.912 21.004 1 64.57 ? O28 3OE 213 K 1 HETATM 4 C C34 3OE . . . JA 16 11.95 -136.004 23.127 1 65.47 ? C34 3OE 213 K 1 HETATM 5 C C33 3OE . . . JA 16 12.512 -135.62 24.343 1 65.99 ? C33 3OE 213 K 1 HETATM 6 C C30 3OE . . . JA 16 12.359 -138.325 23.699 1 65.67 ? C30 3OE 213 K 1 HETATM 7 C C31 3OE . . . JA 16 12.924 -137.935 24.916 1 65.93 ? C31 3OE 213 K 1 HETATM 8 C C32 3OE . . . JA 16 12.994 -136.577 25.242 1 66.26 ? C32 3OE 213 K 1 HETATM 9 O O35 3OE . . . JA 16 13.544 -136.13 26.409 1 66.85 ? O35 3OE 213 K 1 HETATM 10 C C36 3OE . . . JA 16 13.375 -136.93 27.589 1 67.65 ? C36 3OE 213 K 1 HETATM 11 C C37 3OE . . . JA 16 14.35 -136.807 28.571 1 68.3 ? C37 3OE 213 K 1 HETATM 12 C C38 3OE . . . JA 16 14.302 -135.734 29.461 1 68.48 ? C38 3OE 213 K 1 HETATM 13 C C39 3OE . . . JA 16 15.283 -135.602 30.443 1 68.68 ? C39 3OE 213 K 1 HETATM 14 C C40 3OE . . . JA 16 16.317 -136.536 30.527 1 68.92 ? C40 3OE 213 K 1 HETATM 15 C C41 3OE . . . JA 16 16.372 -137.608 29.635 1 68.92 ? C41 3OE 213 K 1 HETATM 16 C C42 3OE . . . JA 16 15.387 -137.741 28.653 1 68.69 ? C42 3OE 213 K 1 HETATM 17 N N18 3OE . . . JA 16 10.48 -136.9 20.852 1 62.79 ? N18 3OE 213 K 1 HETATM 18 C C17 3OE . . . JA 16 9.805 -137.148 19.558 1 61.42 ? C17 3OE 213 K 1 HETATM 19 C C15 3OE . . . JA 16 10.773 -136.924 18.376 1 60.55 ? C15 3OE 213 K 1 HETATM 20 O O16 3OE . . . JA 16 11.47 -135.911 18.299 1 60.15 ? O16 3OE 213 K 1 HETATM 21 C C19 3OE . . . JA 16 8.546 -136.262 19.474 1 61.38 ? C19 3OE 213 K 1 HETATM 22 O O20 3OE . . . JA 16 7.647 -136.654 20.511 1 61.45 ? O20 3OE 213 K 1 HETATM 23 C C43 3OE . . . JA 16 7.83 -136.34 18.122 1 61.19 ? C43 3OE 213 K 1 HETATM 24 N N13 3OE . . . JA 16 10.794 -137.921 17.485 1 59.77 ? N13 3OE 213 K 1 HETATM 25 C C11 3OE . . . JA 16 11.62 -137.904 16.261 1 59.07 ? C11 3OE 213 K 1 HETATM 26 C C9 3OE . . . JA 16 10.691 -137.675 15.059 1 58.56 ? C9 3OE 213 K 1 HETATM 27 O O10 3OE . . . JA 16 9.681 -138.363 14.915 1 58.78 ? O10 3OE 213 K 1 HETATM 28 C C12 3OE . . . JA 16 12.361 -139.235 16.074 1 58.96 ? C12 3OE 213 K 1 HETATM 29 C C14 3OE . . . JA 16 13.253 -139.608 17.261 1 59 ? C14 3OE 213 K 1 HETATM 30 C C21 3OE . . . JA 16 14.413 -138.628 17.453 1 59.07 ? C21 3OE 213 K 1 HETATM 31 C C22 3OE . . . JA 16 15.392 -138.486 16.464 1 59.17 ? C22 3OE 213 K 1 HETATM 32 C C23 3OE . . . JA 16 14.489 -137.879 18.631 1 59.02 ? C23 3OE 213 K 1 HETATM 33 C C24 3OE . . . JA 16 16.449 -137.588 16.648 1 59.25 ? C24 3OE 213 K 1 HETATM 34 C C26 3OE . . . JA 16 15.543 -136.982 18.813 1 59.14 ? C26 3OE 213 K 1 HETATM 35 C C25 3OE . . . JA 16 16.521 -136.837 17.823 1 59.27 ? C25 3OE 213 K 1 HETATM 36 C C4 3OE . . . JA 16 8.211 -132.911 13.64 1 55.78 ? C4 3OE 213 K 1 HETATM 37 C C5 3OE . . . JA 16 9.404 -132.612 13.109 1 55.72 ? C5 3OE 213 K 1 HETATM 38 C C6 3OE . . . JA 16 10.195 -133.677 12.861 1 56.12 ? C6 3OE 213 K 1 HETATM 39 C C7 3OE . . . JA 16 11.59 -133.53 12.274 1 55.92 ? C7 3OE 213 K 1 HETATM 40 S S3 3OE . . . JA 16 8.13 -134.603 13.809 1 56.46 ? S3 3OE 213 K 1 HETATM 41 C C1 3OE . . . JA 16 9.659 -134.926 13.189 1 56.57 ? C1 3OE 213 K 1 HETATM 42 C C2 3OE . . . JA 16 10.254 -136.341 13.045 1 56.92 ? C2 3OE 213 K 1 HETATM 43 N N29 3OE . . . JA 16 11.046 -136.693 14.232 1 57.7 ? N29 3OE 213 K 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 63 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #