data_3OEW # _model_server_result.job_id FSK8ml891UBnUC5GrjEWzQ _model_server_result.datetime_utc '2024-11-08 21:18:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3oew # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":4345}' # _entry.id 3OEW # _exptl.entry_id 3OEW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OEW _cell.length_a 98.551 _cell.length_b 98.551 _cell.length_c 139.714 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OEW _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 49.2755 -85.34767 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.571333 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 49.2755 -85.34767 46.571333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 258 n n PA O2A NAD sing 259 n n PA O5B NAD sing 260 n n PA O3 NAD sing 261 n n O2A HOA2 NAD sing 262 n n O5B C5B NAD sing 263 n n C5B C4B NAD sing 264 n n C5B H51A NAD sing 265 n n C5B H52A NAD sing 266 n n C4B O4B NAD sing 267 n n C4B C3B NAD sing 268 n n C4B H4B NAD sing 269 n n O4B C1B NAD sing 270 n n C3B O3B NAD sing 271 n n C3B C2B NAD sing 272 n n C3B H3B NAD sing 273 n n O3B HO3A NAD sing 274 n n C2B O2B NAD sing 275 n n C2B C1B NAD sing 276 n n C2B H2B NAD sing 277 n n O2B HO2A NAD sing 278 n n C1B N9A NAD sing 279 n n C1B H1B NAD sing 280 n n N9A C8A NAD sing 281 n y N9A C4A NAD sing 282 n y C8A N7A NAD doub 283 n y C8A H8A NAD sing 284 n n N7A C5A NAD sing 285 n y C5A C6A NAD sing 286 n y C5A C4A NAD doub 287 n y C6A N6A NAD sing 288 n n C6A N1A NAD doub 289 n y N6A H61A NAD sing 290 n n N6A H62A NAD sing 291 n n N1A C2A NAD sing 292 n y C2A N3A NAD doub 293 n y C2A H2A NAD sing 294 n n N3A C4A NAD sing 295 n y O3 PN NAD sing 296 n n PN O1N NAD doub 297 n n PN O2N NAD sing 298 n n PN O5D NAD sing 299 n n O5D C5D NAD sing 300 n n C5D C4D NAD sing 301 n n C5D H51N NAD sing 302 n n C5D H52N NAD sing 303 n n C4D O4D NAD sing 304 n n C4D C3D NAD sing 305 n n C4D H4D NAD sing 306 n n O4D C1D NAD sing 307 n n C3D O3D NAD sing 308 n n C3D C2D NAD sing 309 n n C3D H3D NAD sing 310 n n O3D HO3N NAD sing 311 n n C2D O2D NAD sing 312 n n C2D C1D NAD sing 313 n n C2D H2D NAD sing 314 n n O2D HO2N NAD sing 315 n n C1D N1N NAD sing 316 n n C1D H1D NAD sing 317 n n N1N C2N NAD sing 318 n y N1N C6N NAD doub 319 n y C2N C3N NAD doub 320 n y C2N H2N NAD sing 321 n n C3N C7N NAD sing 322 n n C3N C4N NAD sing 323 n y C7N O7N NAD doub 324 n n C7N N7N NAD sing 325 n n N7N H71N NAD sing 326 n n N7N H72N NAD sing 327 n n C4N C5N NAD doub 328 n y C4N H4N NAD sing 329 n n C5N C6N NAD sing 330 n y C5N H5N NAD sing 331 n n C6N H6N NAD sing 332 n n # _atom_sites.entry_id 3OEW _atom_sites.fract_transf_matrix[1][1] 0.010147 _atom_sites.fract_transf_matrix[1][2] 0.005858 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 4345 4345 NAD NAD . C 3 MPD A 1 270 1 MPD MPD . D 4 HOH A 1 271 1 HOH HOH . D 4 HOH A 2 272 2 HOH HOH . D 4 HOH A 3 273 3 HOH HOH . D 4 HOH A 4 274 4 HOH HOH . D 4 HOH A 5 275 5 HOH HOH . D 4 HOH A 6 276 6 HOH HOH . D 4 HOH A 7 277 7 HOH HOH . D 4 HOH A 8 278 8 HOH HOH . D 4 HOH A 9 279 10 HOH HOH . D 4 HOH A 10 280 11 HOH HOH . D 4 HOH A 11 281 12 HOH HOH . D 4 HOH A 12 282 13 HOH HOH . D 4 HOH A 13 283 14 HOH HOH . D 4 HOH A 14 284 15 HOH HOH . D 4 HOH A 15 285 16 HOH HOH . D 4 HOH A 16 286 17 HOH HOH . D 4 HOH A 17 287 18 HOH HOH . D 4 HOH A 18 288 19 HOH HOH . D 4 HOH A 19 289 20 HOH HOH . D 4 HOH A 20 290 21 HOH HOH . D 4 HOH A 21 291 22 HOH HOH . D 4 HOH A 22 292 23 HOH HOH . D 4 HOH A 23 293 24 HOH HOH . D 4 HOH A 24 294 25 HOH HOH . D 4 HOH A 25 295 26 HOH HOH . D 4 HOH A 26 296 27 HOH HOH . D 4 HOH A 27 297 28 HOH HOH . D 4 HOH A 28 298 29 HOH HOH . D 4 HOH A 29 299 30 HOH HOH . D 4 HOH A 30 300 31 HOH HOH . D 4 HOH A 31 301 32 HOH HOH . D 4 HOH A 32 302 33 HOH HOH . D 4 HOH A 33 303 34 HOH HOH . D 4 HOH A 34 304 35 HOH HOH . D 4 HOH A 35 305 36 HOH HOH . D 4 HOH A 36 306 37 HOH HOH . D 4 HOH A 37 307 38 HOH HOH . D 4 HOH A 38 308 39 HOH HOH . D 4 HOH A 39 309 40 HOH HOH . D 4 HOH A 40 310 41 HOH HOH . D 4 HOH A 41 311 42 HOH HOH . D 4 HOH A 42 312 44 HOH HOH . D 4 HOH A 43 313 45 HOH HOH . D 4 HOH A 44 314 46 HOH HOH . D 4 HOH A 45 315 47 HOH HOH . D 4 HOH A 46 316 48 HOH HOH . D 4 HOH A 47 317 49 HOH HOH . D 4 HOH A 48 318 50 HOH HOH . D 4 HOH A 49 319 51 HOH HOH . D 4 HOH A 50 320 52 HOH HOH . D 4 HOH A 51 321 53 HOH HOH . D 4 HOH A 52 322 54 HOH HOH . D 4 HOH A 53 323 55 HOH HOH . D 4 HOH A 54 324 56 HOH HOH . D 4 HOH A 55 325 57 HOH HOH . D 4 HOH A 56 326 58 HOH HOH . D 4 HOH A 57 327 59 HOH HOH . D 4 HOH A 58 328 60 HOH HOH . D 4 HOH A 59 329 61 HOH HOH . D 4 HOH A 60 330 62 HOH HOH . D 4 HOH A 61 331 64 HOH HOH . D 4 HOH A 62 332 65 HOH HOH . D 4 HOH A 63 333 66 HOH HOH . D 4 HOH A 64 334 67 HOH HOH . D 4 HOH A 65 335 68 HOH HOH . D 4 HOH A 66 336 69 HOH HOH . D 4 HOH A 67 337 70 HOH HOH . D 4 HOH A 68 338 71 HOH HOH . D 4 HOH A 69 339 72 HOH HOH . D 4 HOH A 70 340 73 HOH HOH . D 4 HOH A 71 341 74 HOH HOH . D 4 HOH A 72 342 75 HOH HOH . D 4 HOH A 73 343 76 HOH HOH . D 4 HOH A 74 344 77 HOH HOH . D 4 HOH A 75 345 78 HOH HOH . D 4 HOH A 76 346 79 HOH HOH . D 4 HOH A 77 347 80 HOH HOH . D 4 HOH A 78 348 81 HOH HOH . D 4 HOH A 79 349 83 HOH HOH . D 4 HOH A 80 350 84 HOH HOH . D 4 HOH A 81 351 85 HOH HOH . D 4 HOH A 82 352 86 HOH HOH . D 4 HOH A 83 353 87 HOH HOH . D 4 HOH A 84 354 89 HOH HOH . D 4 HOH A 85 355 90 HOH HOH . D 4 HOH A 86 356 91 HOH HOH . D 4 HOH A 87 357 92 HOH HOH . D 4 HOH A 88 358 93 HOH HOH . D 4 HOH A 89 359 95 HOH HOH . D 4 HOH A 90 360 96 HOH HOH . D 4 HOH A 91 361 97 HOH HOH . D 4 HOH A 92 362 98 HOH HOH . D 4 HOH A 93 363 100 HOH HOH . D 4 HOH A 94 364 101 HOH HOH . D 4 HOH A 95 365 102 HOH HOH . D 4 HOH A 96 366 103 HOH HOH . D 4 HOH A 97 367 104 HOH HOH . D 4 HOH A 98 368 105 HOH HOH . D 4 HOH A 99 369 106 HOH HOH . D 4 HOH A 100 370 107 HOH HOH . D 4 HOH A 101 371 108 HOH HOH . D 4 HOH A 102 372 109 HOH HOH . D 4 HOH A 103 373 110 HOH HOH . D 4 HOH A 104 374 111 HOH HOH . D 4 HOH A 105 375 112 HOH HOH . D 4 HOH A 106 376 113 HOH HOH . D 4 HOH A 107 377 114 HOH HOH . D 4 HOH A 108 378 115 HOH HOH . D 4 HOH A 109 379 117 HOH HOH . D 4 HOH A 110 380 118 HOH HOH . D 4 HOH A 111 381 119 HOH HOH . D 4 HOH A 112 382 120 HOH HOH . D 4 HOH A 113 383 121 HOH HOH . D 4 HOH A 114 384 122 HOH HOH . D 4 HOH A 115 385 123 HOH HOH . D 4 HOH A 116 386 125 HOH HOH . D 4 HOH A 117 387 127 HOH HOH . D 4 HOH A 118 388 128 HOH HOH . D 4 HOH A 119 389 131 HOH HOH . D 4 HOH A 120 390 133 HOH HOH . D 4 HOH A 121 391 134 HOH HOH . D 4 HOH A 122 392 136 HOH HOH . D 4 HOH A 123 393 137 HOH HOH . D 4 HOH A 124 394 138 HOH HOH . D 4 HOH A 125 395 139 HOH HOH . D 4 HOH A 126 396 140 HOH HOH . D 4 HOH A 127 397 141 HOH HOH . D 4 HOH A 128 398 142 HOH HOH . D 4 HOH A 129 399 143 HOH HOH . D 4 HOH A 130 400 144 HOH HOH . D 4 HOH A 131 401 145 HOH HOH . D 4 HOH A 132 402 147 HOH HOH . D 4 HOH A 133 403 148 HOH HOH . D 4 HOH A 134 404 149 HOH HOH . D 4 HOH A 135 405 150 HOH HOH . D 4 HOH A 136 406 151 HOH HOH . D 4 HOH A 137 407 152 HOH HOH . D 4 HOH A 138 408 153 HOH HOH . D 4 HOH A 139 409 154 HOH HOH . D 4 HOH A 140 410 155 HOH HOH . D 4 HOH A 141 411 156 HOH HOH . D 4 HOH A 142 412 157 HOH HOH . D 4 HOH A 143 413 158 HOH HOH . D 4 HOH A 144 414 159 HOH HOH . D 4 HOH A 145 415 160 HOH HOH . D 4 HOH A 146 416 161 HOH HOH . D 4 HOH A 147 417 162 HOH HOH . D 4 HOH A 148 418 163 HOH HOH . D 4 HOH A 149 419 164 HOH HOH . D 4 HOH A 150 420 165 HOH HOH . D 4 HOH A 151 421 166 HOH HOH . D 4 HOH A 152 422 167 HOH HOH . D 4 HOH A 153 423 168 HOH HOH . D 4 HOH A 154 424 169 HOH HOH . D 4 HOH A 155 425 170 HOH HOH . D 4 HOH A 156 426 171 HOH HOH . D 4 HOH A 157 427 172 HOH HOH . D 4 HOH A 158 428 173 HOH HOH . D 4 HOH A 159 429 174 HOH HOH . D 4 HOH A 160 430 175 HOH HOH . D 4 HOH A 161 431 176 HOH HOH . D 4 HOH A 162 432 177 HOH HOH . D 4 HOH A 163 433 178 HOH HOH . D 4 HOH A 164 434 179 HOH HOH . D 4 HOH A 165 435 180 HOH HOH . D 4 HOH A 166 436 181 HOH HOH . D 4 HOH A 167 437 182 HOH HOH . D 4 HOH A 168 438 183 HOH HOH . D 4 HOH A 169 439 184 HOH HOH . D 4 HOH A 170 440 185 HOH HOH . D 4 HOH A 171 441 186 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 0.716 -33.741 11.09 1 42.6 ? PA NAD 4345 A 1 HETATM 2 O O1A NAD . . . B 2 0.825 -32.444 10.389 1 39.89 ? O1A NAD 4345 A 1 HETATM 3 O O2A NAD . . . B 2 -0.254 -34.677 10.483 1 41.08 ? O2A NAD 4345 A 1 HETATM 4 O O5B NAD . . . B 2 0.308 -33.507 12.624 1 41.99 ? O5B NAD 4345 A 1 HETATM 5 C C5B NAD . . . B 2 0.913 -32.532 13.438 1 42.89 ? C5B NAD 4345 A 1 HETATM 6 C C4B NAD . . . B 2 -0.178 -32.062 14.396 1 41.27 ? C4B NAD 4345 A 1 HETATM 7 O O4B NAD . . . B 2 0.278 -31.049 15.279 1 38.32 ? O4B NAD 4345 A 1 HETATM 8 C C3B NAD . . . B 2 -1.352 -31.475 13.614 1 38.44 ? C3B NAD 4345 A 1 HETATM 9 O O3B NAD . . . B 2 -2.532 -32.14 13.982 1 38.18 ? O3B NAD 4345 A 1 HETATM 10 C C2B NAD . . . B 2 -1.474 -30.061 14.115 1 40.76 ? C2B NAD 4345 A 1 HETATM 11 O O2B NAD . . . B 2 -2.831 -29.717 14.246 1 47.32 ? O2B NAD 4345 A 1 HETATM 12 C C1B NAD . . . B 2 -0.806 -30.171 15.478 1 37.76 ? C1B NAD 4345 A 1 HETATM 13 N N9A NAD . . . B 2 -0.481 -28.839 16.032 1 30.5 ? N9A NAD 4345 A 1 HETATM 14 C C8A NAD . . . B 2 0.294 -27.841 15.493 1 32.98 ? C8A NAD 4345 A 1 HETATM 15 N N7A NAD . . . B 2 0.274 -26.79 16.343 1 32.9 ? N7A NAD 4345 A 1 HETATM 16 C C5A NAD . . . B 2 -0.526 -27.099 17.398 1 29.59 ? C5A NAD 4345 A 1 HETATM 17 C C6A NAD . . . B 2 -0.908 -26.41 18.535 1 30.74 ? C6A NAD 4345 A 1 HETATM 18 N N6A NAD . . . B 2 -0.645 -25.114 18.676 1 32.87 ? N6A NAD 4345 A 1 HETATM 19 N N1A NAD . . . B 2 -1.742 -27.016 19.436 1 39.13 ? N1A NAD 4345 A 1 HETATM 20 C C2A NAD . . . B 2 -2.214 -28.286 19.216 1 35.57 ? C2A NAD 4345 A 1 HETATM 21 N N3A NAD . . . B 2 -1.833 -28.962 18.095 1 34.27 ? N3A NAD 4345 A 1 HETATM 22 C C4A NAD . . . B 2 -1.002 -28.377 17.208 1 32.08 ? C4A NAD 4345 A 1 HETATM 23 O O3 NAD . . . B 2 2.199 -34.369 11.135 1 45.84 ? O3 NAD 4345 A 1 HETATM 24 P PN NAD . . . B 2 2.648 -35.823 11.697 1 36.53 ? PN NAD 4345 A 1 HETATM 25 O O1N NAD . . . B 2 3.745 -36.287 10.817 1 40.59 ? O1N NAD 4345 A 1 HETATM 26 O O2N NAD . . . B 2 1.561 -36.766 12.036 1 34.2 ? O2N NAD 4345 A 1 HETATM 27 O O5D NAD . . . B 2 3.286 -35.34 13.091 1 35.79 ? O5D NAD 4345 A 1 HETATM 28 C C5D NAD . . . B 2 2.902 -35.889 14.337 1 38.94 ? C5D NAD 4345 A 1 HETATM 29 C C4D NAD . . . B 2 4.142 -35.964 15.245 1 40.52 ? C4D NAD 4345 A 1 HETATM 30 O O4D NAD . . . B 2 5.023 -36.974 14.768 1 37.61 ? O4D NAD 4345 A 1 HETATM 31 C C3D NAD . . . B 2 4.943 -34.673 15.218 1 37.36 ? C3D NAD 4345 A 1 HETATM 32 O O3D NAD . . . B 2 5.446 -34.413 16.502 1 40.56 ? O3D NAD 4345 A 1 HETATM 33 C C2D NAD . . . B 2 6.115 -35.001 14.309 1 36.09 ? C2D NAD 4345 A 1 HETATM 34 O O2D NAD . . . B 2 7.226 -34.207 14.624 1 31.64 ? O2D NAD 4345 A 1 HETATM 35 C C1D NAD . . . B 2 6.336 -36.457 14.642 1 34.69 ? C1D NAD 4345 A 1 HETATM 36 N N1N NAD . . . B 2 7.116 -37.197 13.627 1 41.59 ? N1N NAD 4345 A 1 HETATM 37 C C2N NAD . . . B 2 6.854 -37.051 12.284 1 33.05 ? C2N NAD 4345 A 1 HETATM 38 C C3N NAD . . . B 2 7.595 -37.757 11.343 1 39.06 ? C3N NAD 4345 A 1 HETATM 39 C C7N NAD . . . B 2 7.235 -37.739 9.881 1 37.61 ? C7N NAD 4345 A 1 HETATM 40 O O7N NAD . . . B 2 8.167 -38.224 8.947 1 36.43 ? O7N NAD 4345 A 1 HETATM 41 N N7N NAD . . . B 2 6.043 -37.301 9.48 1 34.02 ? N7N NAD 4345 A 1 HETATM 42 C C4N NAD . . . B 2 8.592 -38.625 11.777 1 36.8 ? C4N NAD 4345 A 1 HETATM 43 C C5N NAD . . . B 2 8.84 -38.768 13.137 1 34.93 ? C5N NAD 4345 A 1 HETATM 44 C C6N NAD . . . B 2 8.095 -38.044 14.064 1 31.63 ? C6N NAD 4345 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #