data_3OF1 # _model_server_result.job_id 2SeBYenSdsQt3l94Oo8Zww _model_server_result.datetime_utc '2024-11-22 10:20:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3of1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 3OF1 # _exptl.entry_id 3OF1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.51 _cell.angle_gamma 90 _cell.entry_id 3OF1 _cell.length_a 146.425 _cell.length_b 45.042 _cell.length_c 39.103 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OF1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 3OF1 _atom_sites.fract_transf_matrix[1][1] 0.006829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000299 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025598 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CMP A 1 501 501 CMP CMP . C 2 CMP A 1 601 601 CMP CMP . D 3 HOH A 1 701 701 HOH HOH . D 3 HOH A 2 702 702 HOH HOH . D 3 HOH A 3 703 703 HOH HOH . D 3 HOH A 4 704 704 HOH HOH . D 3 HOH A 5 705 705 HOH HOH . D 3 HOH A 6 706 706 HOH HOH . D 3 HOH A 7 707 707 HOH HOH . D 3 HOH A 8 708 708 HOH HOH . D 3 HOH A 9 709 709 HOH HOH . D 3 HOH A 10 710 710 HOH HOH . D 3 HOH A 11 711 711 HOH HOH . D 3 HOH A 12 712 712 HOH HOH . D 3 HOH A 13 713 713 HOH HOH . D 3 HOH A 14 714 714 HOH HOH . D 3 HOH A 15 715 715 HOH HOH . D 3 HOH A 16 716 716 HOH HOH . D 3 HOH A 17 717 717 HOH HOH . D 3 HOH A 18 718 718 HOH HOH . D 3 HOH A 19 719 719 HOH HOH . D 3 HOH A 20 720 720 HOH HOH . D 3 HOH A 21 721 721 HOH HOH . D 3 HOH A 22 722 722 HOH HOH . D 3 HOH A 23 723 723 HOH HOH . D 3 HOH A 24 724 724 HOH HOH . D 3 HOH A 25 725 725 HOH HOH . D 3 HOH A 26 726 726 HOH HOH . D 3 HOH A 27 727 727 HOH HOH . D 3 HOH A 28 728 728 HOH HOH . D 3 HOH A 29 729 729 HOH HOH . D 3 HOH A 30 730 730 HOH HOH . D 3 HOH A 31 731 731 HOH HOH . D 3 HOH A 32 732 732 HOH HOH . D 3 HOH A 33 733 733 HOH HOH . D 3 HOH A 34 734 734 HOH HOH . D 3 HOH A 35 735 735 HOH HOH . D 3 HOH A 36 736 736 HOH HOH . D 3 HOH A 37 737 737 HOH HOH . D 3 HOH A 38 738 738 HOH HOH . D 3 HOH A 39 739 739 HOH HOH . D 3 HOH A 40 740 740 HOH HOH . D 3 HOH A 41 741 741 HOH HOH . D 3 HOH A 42 742 742 HOH HOH . D 3 HOH A 43 743 743 HOH HOH . D 3 HOH A 44 744 744 HOH HOH . D 3 HOH A 45 745 745 HOH HOH . D 3 HOH A 46 746 746 HOH HOH . D 3 HOH A 47 747 747 HOH HOH . D 3 HOH A 48 748 748 HOH HOH . D 3 HOH A 49 749 749 HOH HOH . D 3 HOH A 50 750 750 HOH HOH . D 3 HOH A 51 751 751 HOH HOH . D 3 HOH A 52 752 752 HOH HOH . D 3 HOH A 53 753 753 HOH HOH . D 3 HOH A 54 754 754 HOH HOH . D 3 HOH A 55 755 755 HOH HOH . D 3 HOH A 56 756 756 HOH HOH . D 3 HOH A 57 757 757 HOH HOH . D 3 HOH A 58 758 758 HOH HOH . D 3 HOH A 59 759 759 HOH HOH . D 3 HOH A 60 760 760 HOH HOH . D 3 HOH A 61 761 761 HOH HOH . D 3 HOH A 62 762 762 HOH HOH . D 3 HOH A 63 763 763 HOH HOH . D 3 HOH A 64 764 764 HOH HOH . D 3 HOH A 65 765 765 HOH HOH . D 3 HOH A 66 766 766 HOH HOH . D 3 HOH A 67 767 767 HOH HOH . D 3 HOH A 68 768 768 HOH HOH . D 3 HOH A 69 769 769 HOH HOH . D 3 HOH A 70 770 770 HOH HOH . D 3 HOH A 71 771 771 HOH HOH . D 3 HOH A 72 772 772 HOH HOH . D 3 HOH A 73 773 773 HOH HOH . D 3 HOH A 74 774 774 HOH HOH . D 3 HOH A 75 775 775 HOH HOH . D 3 HOH A 76 776 776 HOH HOH . D 3 HOH A 77 777 777 HOH HOH . D 3 HOH A 78 778 778 HOH HOH . D 3 HOH A 79 779 779 HOH HOH . D 3 HOH A 80 780 780 HOH HOH . D 3 HOH A 81 781 781 HOH HOH . D 3 HOH A 82 782 782 HOH HOH . D 3 HOH A 83 783 783 HOH HOH . D 3 HOH A 84 784 784 HOH HOH . D 3 HOH A 85 785 785 HOH HOH . D 3 HOH A 86 786 786 HOH HOH . D 3 HOH A 87 787 787 HOH HOH . D 3 HOH A 88 788 788 HOH HOH . D 3 HOH A 89 789 789 HOH HOH . D 3 HOH A 90 790 790 HOH HOH . D 3 HOH A 91 791 791 HOH HOH . D 3 HOH A 92 792 792 HOH HOH . D 3 HOH A 93 793 793 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . C 2 -27.632 19.862 -7.167 1 19.62 ? P CMP 601 A 1 HETATM 2 O O1P CMP . . . C 2 -27.96 18.84 -8.244 1 20.09 ? O1P CMP 601 A 1 HETATM 3 O O2P CMP . . . C 2 -26.263 20.463 -7.233 1 17.75 ? O2P CMP 601 A 1 HETATM 4 O O5' CMP . . . C 2 -27.848 19.211 -5.765 1 21.83 ? O5' CMP 601 A 1 HETATM 5 C C5' CMP . . . C 2 -28.028 20.014 -4.59 1 22.88 ? C5' CMP 601 A 1 HETATM 6 C C4' CMP . . . C 2 -28.974 21.149 -4.931 1 21.98 ? C4' CMP 601 A 1 HETATM 7 O O4' CMP . . . C 2 -29.162 22.107 -3.872 1 20.64 ? O4' CMP 601 A 1 HETATM 8 C C3' CMP . . . C 2 -28.552 21.997 -6.184 1 19.63 ? C3' CMP 601 A 1 HETATM 9 O O3' CMP . . . C 2 -28.659 21.092 -7.304 1 16.87 ? O3' CMP 601 A 1 HETATM 10 C C2' CMP . . . C 2 -29.629 23.082 -6.07 1 18.73 ? C2' CMP 601 A 1 HETATM 11 O O2' CMP . . . C 2 -30.823 22.643 -6.727 1 17.27 ? O2' CMP 601 A 1 HETATM 12 C C1' CMP . . . C 2 -29.874 23.188 -4.542 1 21.9 ? C1' CMP 601 A 1 HETATM 13 N N9 CMP . . . C 2 -29.328 24.475 -4.093 1 20.82 ? N9 CMP 601 A 1 HETATM 14 C C8 CMP . . . C 2 -30.064 25.555 -3.65 1 17.64 ? C8 CMP 601 A 1 HETATM 15 N N7 CMP . . . C 2 -29.207 26.559 -3.379 1 21.33 ? N7 CMP 601 A 1 HETATM 16 C C5 CMP . . . C 2 -27.958 26.173 -3.659 1 17.51 ? C5 CMP 601 A 1 HETATM 17 C C6 CMP . . . C 2 -26.638 26.821 -3.645 1 24.77 ? C6 CMP 601 A 1 HETATM 18 N N6 CMP . . . C 2 -26.558 28.132 -3.131 1 23.61 ? N6 CMP 601 A 1 HETATM 19 N N1 CMP . . . C 2 -25.561 26.053 -4.07 1 20.86 ? N1 CMP 601 A 1 HETATM 20 C C2 CMP . . . C 2 -25.682 24.798 -4.452 1 17.3 ? C2 CMP 601 A 1 HETATM 21 N N3 CMP . . . C 2 -26.918 24.197 -4.533 1 23.23 ? N3 CMP 601 A 1 HETATM 22 C C4 CMP . . . C 2 -28.047 24.794 -4.162 1 16.96 ? C4 CMP 601 A 1 # _model_server_stats.io_time_ms 127 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #