data_3OF2 # _model_server_result.job_id QMJ279fH-HNqweLwI2aXUQ _model_server_result.datetime_utc '2024-11-08 21:17:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3of2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":270}' # _entry.id 3OF2 # _exptl.entry_id 3OF2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3OF2 _cell.length_a 98.366 _cell.length_b 98.366 _cell.length_c 139.887 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3OF2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 49.183 -85.187455 0 3 'crystal symmetry operation' 9_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 46.629 4 'crystal symmetry operation' 12_545 x,x-y-1,-z+1/3 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 49.183 -85.187455 46.629 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 3OF2 _atom_sites.fract_transf_matrix[1][1] 0.010166 _atom_sites.fract_transf_matrix[1][2] 0.005869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007149 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 4345 4345 NAD NAD . C 3 MPD A 1 270 1 MPD MPD . D 4 HOH A 1 271 1 HOH HOH . D 4 HOH A 2 272 2 HOH HOH . D 4 HOH A 3 273 3 HOH HOH . D 4 HOH A 4 274 4 HOH HOH . D 4 HOH A 5 275 5 HOH HOH . D 4 HOH A 6 276 7 HOH HOH . D 4 HOH A 7 277 9 HOH HOH . D 4 HOH A 8 278 10 HOH HOH . D 4 HOH A 9 279 11 HOH HOH . D 4 HOH A 10 280 12 HOH HOH . D 4 HOH A 11 281 13 HOH HOH . D 4 HOH A 12 282 14 HOH HOH . D 4 HOH A 13 283 15 HOH HOH . D 4 HOH A 14 284 16 HOH HOH . D 4 HOH A 15 285 17 HOH HOH . D 4 HOH A 16 286 18 HOH HOH . D 4 HOH A 17 287 19 HOH HOH . D 4 HOH A 18 288 20 HOH HOH . D 4 HOH A 19 289 21 HOH HOH . D 4 HOH A 20 290 23 HOH HOH . D 4 HOH A 21 291 24 HOH HOH . D 4 HOH A 22 292 25 HOH HOH . D 4 HOH A 23 293 26 HOH HOH . D 4 HOH A 24 294 27 HOH HOH . D 4 HOH A 25 295 28 HOH HOH . D 4 HOH A 26 296 29 HOH HOH . D 4 HOH A 27 297 30 HOH HOH . D 4 HOH A 28 298 31 HOH HOH . D 4 HOH A 29 299 32 HOH HOH . D 4 HOH A 30 300 33 HOH HOH . D 4 HOH A 31 301 34 HOH HOH . D 4 HOH A 32 302 35 HOH HOH . D 4 HOH A 33 303 36 HOH HOH . D 4 HOH A 34 304 37 HOH HOH . D 4 HOH A 35 305 38 HOH HOH . D 4 HOH A 36 306 40 HOH HOH . D 4 HOH A 37 307 41 HOH HOH . D 4 HOH A 38 308 42 HOH HOH . D 4 HOH A 39 309 43 HOH HOH . D 4 HOH A 40 310 44 HOH HOH . D 4 HOH A 41 311 45 HOH HOH . D 4 HOH A 42 312 46 HOH HOH . D 4 HOH A 43 313 47 HOH HOH . D 4 HOH A 44 314 48 HOH HOH . D 4 HOH A 45 315 49 HOH HOH . D 4 HOH A 46 316 50 HOH HOH . D 4 HOH A 47 317 51 HOH HOH . D 4 HOH A 48 318 52 HOH HOH . D 4 HOH A 49 319 53 HOH HOH . D 4 HOH A 50 320 54 HOH HOH . D 4 HOH A 51 321 55 HOH HOH . D 4 HOH A 52 322 56 HOH HOH . D 4 HOH A 53 323 57 HOH HOH . D 4 HOH A 54 324 58 HOH HOH . D 4 HOH A 55 325 59 HOH HOH . D 4 HOH A 56 326 60 HOH HOH . D 4 HOH A 57 327 61 HOH HOH . D 4 HOH A 58 328 63 HOH HOH . D 4 HOH A 59 329 65 HOH HOH . D 4 HOH A 60 330 67 HOH HOH . D 4 HOH A 61 331 68 HOH HOH . D 4 HOH A 62 332 69 HOH HOH . D 4 HOH A 63 333 70 HOH HOH . D 4 HOH A 64 334 71 HOH HOH . D 4 HOH A 65 335 72 HOH HOH . D 4 HOH A 66 336 73 HOH HOH . D 4 HOH A 67 337 74 HOH HOH . D 4 HOH A 68 338 75 HOH HOH . D 4 HOH A 69 339 76 HOH HOH . D 4 HOH A 70 340 77 HOH HOH . D 4 HOH A 71 341 78 HOH HOH . D 4 HOH A 72 342 79 HOH HOH . D 4 HOH A 73 343 80 HOH HOH . D 4 HOH A 74 344 81 HOH HOH . D 4 HOH A 75 345 82 HOH HOH . D 4 HOH A 76 346 83 HOH HOH . D 4 HOH A 77 347 84 HOH HOH . D 4 HOH A 78 348 85 HOH HOH . D 4 HOH A 79 349 86 HOH HOH . D 4 HOH A 80 350 87 HOH HOH . D 4 HOH A 81 351 88 HOH HOH . D 4 HOH A 82 352 89 HOH HOH . D 4 HOH A 83 353 90 HOH HOH . D 4 HOH A 84 354 91 HOH HOH . D 4 HOH A 85 355 92 HOH HOH . D 4 HOH A 86 356 93 HOH HOH . D 4 HOH A 87 357 94 HOH HOH . D 4 HOH A 88 358 95 HOH HOH . D 4 HOH A 89 359 96 HOH HOH . D 4 HOH A 90 360 97 HOH HOH . D 4 HOH A 91 361 98 HOH HOH . D 4 HOH A 92 362 99 HOH HOH . D 4 HOH A 93 363 100 HOH HOH . D 4 HOH A 94 364 101 HOH HOH . D 4 HOH A 95 365 102 HOH HOH . D 4 HOH A 96 366 103 HOH HOH . D 4 HOH A 97 367 104 HOH HOH . D 4 HOH A 98 368 105 HOH HOH . D 4 HOH A 99 369 106 HOH HOH . D 4 HOH A 100 370 107 HOH HOH . D 4 HOH A 101 371 109 HOH HOH . D 4 HOH A 102 372 110 HOH HOH . D 4 HOH A 103 373 111 HOH HOH . D 4 HOH A 104 374 112 HOH HOH . D 4 HOH A 105 375 113 HOH HOH . D 4 HOH A 106 376 114 HOH HOH . D 4 HOH A 107 377 115 HOH HOH . D 4 HOH A 108 378 116 HOH HOH . D 4 HOH A 109 379 117 HOH HOH . D 4 HOH A 110 380 118 HOH HOH . D 4 HOH A 111 381 119 HOH HOH . D 4 HOH A 112 382 120 HOH HOH . D 4 HOH A 113 383 121 HOH HOH . D 4 HOH A 114 384 122 HOH HOH . D 4 HOH A 115 385 123 HOH HOH . D 4 HOH A 116 386 124 HOH HOH . D 4 HOH A 117 387 125 HOH HOH . D 4 HOH A 118 388 126 HOH HOH . D 4 HOH A 119 389 127 HOH HOH . D 4 HOH A 120 390 128 HOH HOH . D 4 HOH A 121 391 129 HOH HOH . D 4 HOH A 122 392 130 HOH HOH . D 4 HOH A 123 393 131 HOH HOH . D 4 HOH A 124 394 132 HOH HOH . D 4 HOH A 125 395 133 HOH HOH . D 4 HOH A 126 396 134 HOH HOH . D 4 HOH A 127 397 135 HOH HOH . D 4 HOH A 128 398 136 HOH HOH . D 4 HOH A 129 399 137 HOH HOH . D 4 HOH A 130 400 138 HOH HOH . D 4 HOH A 131 401 139 HOH HOH . D 4 HOH A 132 402 140 HOH HOH . D 4 HOH A 133 403 141 HOH HOH . D 4 HOH A 134 404 142 HOH HOH . D 4 HOH A 135 405 143 HOH HOH . D 4 HOH A 136 406 144 HOH HOH . D 4 HOH A 137 407 145 HOH HOH . D 4 HOH A 138 408 146 HOH HOH . D 4 HOH A 139 409 147 HOH HOH . D 4 HOH A 140 410 148 HOH HOH . D 4 HOH A 141 411 149 HOH HOH . D 4 HOH A 142 412 150 HOH HOH . D 4 HOH A 143 413 151 HOH HOH . D 4 HOH A 144 414 152 HOH HOH . D 4 HOH A 145 415 153 HOH HOH . D 4 HOH A 146 416 154 HOH HOH . D 4 HOH A 147 417 155 HOH HOH . D 4 HOH A 148 418 156 HOH HOH . D 4 HOH A 149 419 157 HOH HOH . D 4 HOH A 150 420 158 HOH HOH . D 4 HOH A 151 421 159 HOH HOH . D 4 HOH A 152 422 160 HOH HOH . D 4 HOH A 153 423 161 HOH HOH . D 4 HOH A 154 424 162 HOH HOH . D 4 HOH A 155 425 163 HOH HOH . D 4 HOH A 156 426 164 HOH HOH . D 4 HOH A 157 427 165 HOH HOH . D 4 HOH A 158 428 166 HOH HOH . D 4 HOH A 159 429 167 HOH HOH . D 4 HOH A 160 430 168 HOH HOH . D 4 HOH A 161 431 169 HOH HOH . D 4 HOH A 162 432 170 HOH HOH . D 4 HOH A 163 433 171 HOH HOH . D 4 HOH A 164 434 172 HOH HOH . D 4 HOH A 165 435 173 HOH HOH . D 4 HOH A 166 436 174 HOH HOH . D 4 HOH A 167 437 175 HOH HOH . D 4 HOH A 168 438 176 HOH HOH . D 4 HOH A 169 439 177 HOH HOH . D 4 HOH A 170 440 178 HOH HOH . D 4 HOH A 171 441 179 HOH HOH . D 4 HOH A 172 442 180 HOH HOH . D 4 HOH A 173 443 181 HOH HOH . D 4 HOH A 174 444 182 HOH HOH . D 4 HOH A 175 445 183 HOH HOH . D 4 HOH A 176 446 184 HOH HOH . D 4 HOH A 177 447 185 HOH HOH . D 4 HOH A 178 448 186 HOH HOH . D 4 HOH A 179 449 187 HOH HOH . D 4 HOH A 180 450 188 HOH HOH . D 4 HOH A 181 451 189 HOH HOH . D 4 HOH A 182 452 190 HOH HOH . D 4 HOH A 183 453 191 HOH HOH . D 4 HOH A 184 454 192 HOH HOH . D 4 HOH A 185 455 194 HOH HOH . D 4 HOH A 186 456 195 HOH HOH . D 4 HOH A 187 457 196 HOH HOH . D 4 HOH A 188 458 197 HOH HOH . D 4 HOH A 189 459 198 HOH HOH . D 4 HOH A 190 460 199 HOH HOH . D 4 HOH A 191 461 200 HOH HOH . D 4 HOH A 192 462 201 HOH HOH . D 4 HOH A 193 463 202 HOH HOH . D 4 HOH A 194 464 203 HOH HOH . D 4 HOH A 195 465 204 HOH HOH . D 4 HOH A 196 466 205 HOH HOH . D 4 HOH A 197 467 207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . C 3 8.878 -32.011 8.919 1 43.24 ? C1 MPD 270 A 1 HETATM 2 C C2 MPD . . . C 3 7.972 -33.144 9.267 1 38.95 ? C2 MPD 270 A 1 HETATM 3 O O2 MPD . . . C 3 6.835 -32.646 9.867 1 42.42 ? O2 MPD 270 A 1 HETATM 4 C CM MPD . . . C 3 7.597 -33.872 8.023 1 43.69 ? CM MPD 270 A 1 HETATM 5 C C3 MPD . . . C 3 8.673 -34.078 10.194 1 36.77 ? C3 MPD 270 A 1 HETATM 6 C C4 MPD . . . C 3 9.18 -33.499 11.471 1 38.49 ? C4 MPD 270 A 1 HETATM 7 O O4 MPD . . . C 3 8.117 -32.991 12.193 1 35.78 ? O4 MPD 270 A 1 HETATM 8 C C5 MPD . . . C 3 9.906 -34.543 12.261 1 33.5 ? C5 MPD 270 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #